Wall clock time and date at job start Tue Mar 31 2020 22:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 C 1.52999 * 109.47114 * 184.99769 * 3 2 1 6 6 N 1.46500 * 109.47226 * 184.99495 * 5 3 2 7 7 C 1.34776 * 119.99923 * 180.02562 * 6 5 3 8 8 O 1.21511 * 120.00427 * 0.02562 * 7 6 5 9 9 C 1.48182 * 119.99554 * 180.02562 * 7 6 5 10 10 C 1.39102 * 119.66382 * 179.72608 * 9 7 6 11 11 C 1.39729 * 118.91419 * 179.77723 * 10 9 7 12 12 C 1.48372 * 120.87023 * 180.25845 * 11 10 9 13 13 C 1.39349 * 120.12389 * 359.96360 * 12 11 10 14 14 C 1.38017 * 119.87502 * 179.72158 * 13 12 11 15 15 C 1.38325 * 120.11990 * 0.57232 * 14 13 12 16 16 C 1.38323 * 120.24747 * 359.67661 * 15 14 13 17 17 C 1.38009 * 120.12339 * 0.04671 * 16 15 14 18 18 C 1.39729 * 118.25446 * 0.49006 * 11 10 9 19 19 C 1.38317 * 119.21548 * 359.75163 * 18 11 10 20 20 N 1.31577 * 121.02836 * 0.02562 * 19 18 11 21 21 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 22 22 C 1.36943 * 119.99752 * 274.72222 * 21 3 2 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 3 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 3 25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47294 * 90.00155 * 26 24 22 28 28 H 1.48499 * 109.47218 * 210.00015 * 26 24 22 29 29 H 1.48496 * 109.47166 * 329.99846 * 26 24 22 30 30 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 31 31 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 32 32 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 34 34 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 35 35 H 1.08995 * 109.47415 * 304.99804 * 5 3 2 36 36 H 1.09008 * 109.47087 * 65.00143 * 5 3 2 37 37 H 0.96998 * 120.00120 * 0.02562 * 6 5 3 38 38 H 1.08004 * 120.54465 * 359.97438 * 10 9 7 39 39 H 1.07999 * 120.06037 * 359.97036 * 13 12 11 40 40 H 1.07996 * 119.93938 * 180.29944 * 14 13 12 41 41 H 1.07997 * 119.87432 * 179.70303 * 15 14 13 42 42 H 1.08007 * 119.93555 * 180.02562 * 16 15 14 43 43 H 1.07997 * 120.06215 * 179.97438 * 17 16 15 44 44 H 1.07999 * 120.39215 * 179.73250 * 18 11 10 45 45 H 1.07999 * 119.48657 * 180.02562 * 19 18 11 46 46 H 0.97001 * 120.00384 * 95.00578 * 21 3 2 47 47 H 0.96999 * 119.99739 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4442 -0.1257 6 7 4.0632 2.8167 -0.0060 7 6 5.3858 3.0629 -0.0869 8 8 6.1650 2.1466 -0.2595 9 6 5.8897 4.4511 0.0347 10 6 7.2566 4.6966 -0.0441 11 6 7.7143 6.0121 0.0679 12 6 9.1625 6.3240 -0.0155 13 6 10.0884 5.3004 -0.2072 14 6 11.4338 5.5971 -0.2898 15 6 11.8646 6.9061 -0.1709 16 6 10.9502 7.9255 0.0246 17 6 9.6021 7.6411 0.1031 18 6 6.7728 7.0254 0.2655 19 6 5.4313 6.6959 0.3376 20 7 5.0326 5.4472 0.2238 21 7 1.6525 2.0974 1.2518 22 6 0.4178 2.6784 1.3668 23 1 -0.2719 2.6498 0.5362 24 6 0.0527 3.3040 2.5509 25 7 0.8936 3.3393 3.5630 26 14 -1.6317 4.0959 2.7081 27 1 -2.6015 3.0979 3.2266 28 1 -1.5534 5.2440 3.6467 29 1 -2.0795 4.5755 1.3759 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.9955 0.8311 0.6660 36 1 3.8500 1.0376 -1.0960 37 1 3.4412 3.5482 0.1314 38 1 7.9526 3.8842 -0.1926 39 1 9.7535 4.2774 -0.2949 40 1 12.1519 4.8051 -0.4432 41 1 12.9187 7.1332 -0.2314 42 1 11.2921 8.9459 0.1163 43 1 8.8891 8.4377 0.2561 44 1 7.0887 8.0537 0.3610 45 1 4.6998 7.4757 0.4898 46 1 2.2720 2.1232 1.9978 47 1 0.6383 3.7761 4.3906 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269486472.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:16 Heat of formation + Delta-G solvation = 29.998071 kcal Electronic energy + Delta-G solvation = -27903.412791 eV Core-core repulsion = 24050.945834 eV Total energy + Delta-G solvation = -3852.466957 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.74933 -39.40529 -38.55417 -36.64623 -34.12590 -33.49699 -32.32957 -31.87426 -31.01690 -29.88496 -29.67288 -27.93288 -25.06279 -24.34944 -23.58045 -22.75788 -21.98362 -21.80865 -20.17479 -19.80323 -18.22698 -17.35924 -16.95891 -16.62637 -15.94141 -15.55805 -15.36136 -15.33337 -14.81107 -14.69031 -14.42969 -14.09603 -13.93569 -13.75075 -13.49543 -13.41006 -13.14791 -13.09230 -12.92296 -12.55512 -12.25786 -12.09083 -11.61497 -11.41706 -11.19835 -10.92971 -10.86555 -10.71739 -10.61043 -10.41024 -10.17301 -10.08936 -9.97994 -9.50263 -9.45507 -9.31243 -9.29088 -8.91068 -8.66085 -8.58533 -6.98422 -5.76177 -3.05214 0.28076 0.73002 1.05583 1.61543 2.90483 3.40006 3.43315 3.48760 3.49951 3.50810 3.98392 4.11461 4.28478 4.41754 4.58433 4.61219 4.68885 4.83576 4.84503 4.90777 5.06307 5.23051 5.35686 5.43445 5.44260 5.48736 5.58536 5.59933 5.72097 5.76032 5.80813 5.95886 5.98831 5.99374 6.10766 6.15670 6.17264 6.29755 6.45356 6.46520 6.57410 6.60431 6.60772 6.63049 6.90296 7.05172 7.26993 7.67986 7.70935 8.03887 8.40647 8.52821 9.52679 10.07690 10.43498 11.45734 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015330 B = 0.002416 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.040363 B =11584.587025 C =13019.465516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.163 3.837 4 H 0.054 0.946 5 C 0.112 3.888 6 N -0.687 5.687 7 C 0.564 3.436 8 O -0.550 6.550 9 C 0.092 3.908 10 C -0.109 4.109 11 C -0.012 4.012 12 C -0.050 4.050 13 C -0.102 4.102 14 C -0.118 4.118 15 C -0.115 4.115 16 C -0.121 4.121 17 C -0.103 4.103 18 C -0.150 4.150 19 C 0.107 3.893 20 N -0.448 5.448 21 N -0.720 5.720 22 C -0.235 4.235 23 H 0.073 0.927 24 C -0.011 4.011 25 N -0.928 5.928 26 Si 0.902 3.098 27 H -0.291 1.291 28 H -0.293 1.293 29 H -0.282 1.282 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.032 0.968 33 H 0.043 0.957 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.422 0.578 38 H 0.149 0.851 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.127 0.873 44 H 0.140 0.860 45 H 0.166 0.834 46 H 0.385 0.615 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.846 7.977 -9.027 22.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.053 3.947 4 H 0.072 0.928 5 C -0.013 4.013 6 N -0.338 5.338 7 C 0.348 3.652 8 O -0.428 6.428 9 C -0.046 4.046 10 C -0.130 4.130 11 C -0.019 4.019 12 C -0.050 4.050 13 C -0.120 4.120 14 C -0.136 4.136 15 C -0.133 4.133 16 C -0.138 4.138 17 C -0.122 4.122 18 C -0.170 4.170 19 C -0.052 4.052 20 N -0.159 5.159 21 N -0.362 5.362 22 C -0.366 4.366 23 H 0.091 0.909 24 C -0.207 4.207 25 N -0.576 5.576 26 Si 0.734 3.266 27 H -0.219 1.219 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.261 0.739 38 H 0.166 0.834 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.145 0.855 44 H 0.158 0.842 45 H 0.183 0.817 46 H 0.219 0.781 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 18.271 7.161 -9.114 21.637 hybrid contribution -0.185 1.037 0.553 1.190 sum 18.086 8.198 -8.561 21.624 Atomic orbital electron populations 1.21767 0.95722 0.99600 1.03269 1.22069 0.96981 0.98352 1.00015 1.20563 0.89749 0.92881 0.91556 0.92775 1.21772 0.95914 0.82340 1.01254 1.45869 1.06865 1.11293 1.69727 1.17841 0.83123 0.86562 0.77645 1.90737 1.56460 1.44576 1.51060 1.21194 0.90335 0.93787 0.99256 1.22145 0.96033 0.96855 0.97927 1.19076 0.92519 0.93002 0.97348 1.18669 0.90990 0.93854 1.01517 1.21364 0.92959 0.99255 0.98421 1.21139 0.95562 0.96860 1.00053 1.21281 0.99782 0.92992 0.99239 1.21105 0.92948 0.99494 1.00303 1.21247 0.96110 0.95558 0.99238 1.22400 0.94073 1.00179 1.00302 1.22785 0.94190 0.93227 0.94995 1.67632 1.38852 1.00317 1.09134 1.42438 1.16938 1.65678 1.11187 1.19186 0.91943 1.27448 0.98030 0.90940 1.24724 0.97987 1.01539 0.96478 1.69668 1.35081 1.48862 1.04034 0.86264 0.84263 0.78807 0.77285 1.21859 1.21914 1.20794 0.89658 0.94106 0.94897 0.93840 0.92502 0.91560 0.91611 0.73917 0.83378 0.85208 0.85560 0.85872 0.85669 0.85474 0.84189 0.81706 0.78079 0.93583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.18 37.16 0.34 -2.29 16 2 C -0.13 -2.33 5.61 -26.73 -0.15 -2.48 16 3 C 0.16 3.09 2.59 -67.93 -0.18 2.92 16 4 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 5 C 0.11 1.97 5.23 -4.04 -0.02 1.95 16 6 N -0.69 -12.57 5.38 -61.14 -0.33 -12.90 16 7 C 0.56 10.25 7.81 -12.18 -0.10 10.16 16 8 O -0.55 -10.82 16.32 5.36 0.09 -10.74 16 9 C 0.09 1.49 6.75 -83.06 -0.56 0.93 16 10 C -0.11 -1.49 9.02 -38.70 -0.35 -1.84 16 11 C -0.01 -0.13 5.91 -104.61 -0.62 -0.75 16 12 C -0.05 -0.51 5.88 -104.90 -0.62 -1.13 16 13 C -0.10 -0.97 9.45 -39.25 -0.37 -1.34 16 14 C -0.12 -0.94 10.03 -39.63 -0.40 -1.34 16 15 C -0.11 -0.82 10.04 -39.52 -0.40 -1.22 16 16 C -0.12 -0.88 10.03 -39.63 -0.40 -1.27 16 17 C -0.10 -0.87 9.45 -39.25 -0.37 -1.24 16 18 C -0.15 -1.55 9.51 -39.00 -0.37 -1.93 16 19 C 0.11 1.31 11.17 -17.63 -0.20 1.12 16 20 N -0.45 -7.08 9.53 -9.88 -0.09 -7.17 16 21 N -0.72 -16.83 4.50 -53.43 -0.24 -17.07 16 22 C -0.24 -6.07 7.76 -15.06 -0.12 -6.19 16 23 H 0.07 1.83 7.33 -52.49 -0.38 1.44 16 24 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 25 N -0.93 -27.21 13.06 55.49 0.72 -26.49 16 26 Si 0.90 21.82 29.55 -169.99 -5.02 16.80 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 29 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 30 H 0.08 1.81 6.01 -51.93 -0.31 1.50 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 37 H 0.42 8.19 7.46 -40.82 -0.30 7.89 16 38 H 0.15 1.92 5.92 -52.48 -0.31 1.60 16 39 H 0.13 1.17 6.30 -52.49 -0.33 0.84 16 40 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 43 H 0.13 0.82 6.29 -52.49 -0.33 0.49 16 44 H 0.14 0.99 6.33 -52.49 -0.33 0.65 16 45 H 0.17 1.58 8.06 -52.49 -0.42 1.15 16 46 H 0.39 9.91 7.80 -40.82 -0.32 9.59 16 47 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 391.50 15.07 5.90 5.90 Total: -1.00 -31.29 391.50 -10.34 -41.63 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -6.41 Total: 16.38 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -4.96 Total: -6.34 kcal Atomic # 7 Polarization: -63.69 SS G_CDS: 0.06 Total: -63.63 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.29 -10.34 -41.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269486472.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.626 kcal (2) G-P(sol) polarization free energy of solvation -31.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds