Wall clock time and date at job start Tue Mar 31 2020 22:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 C 1.52999 * 109.47114 * 184.99769 * 3 2 1 6 6 N 1.46500 * 109.47226 * 184.99495 * 5 3 2 7 7 C 1.34776 * 119.99923 * 180.02562 * 6 5 3 8 8 O 1.21511 * 120.00427 * 0.02562 * 7 6 5 9 9 C 1.48182 * 119.99554 * 180.02562 * 7 6 5 10 10 C 1.39102 * 119.66382 * 179.72608 * 9 7 6 11 11 C 1.39729 * 118.91419 * 179.77723 * 10 9 7 12 12 C 1.48372 * 120.87023 * 180.25845 * 11 10 9 13 13 C 1.39349 * 120.12389 * 359.96360 * 12 11 10 14 14 C 1.38017 * 119.87502 * 179.72158 * 13 12 11 15 15 C 1.38325 * 120.11990 * 0.57232 * 14 13 12 16 16 C 1.38323 * 120.24747 * 359.67661 * 15 14 13 17 17 C 1.38009 * 120.12339 * 0.04671 * 16 15 14 18 18 C 1.39729 * 118.25446 * 0.49006 * 11 10 9 19 19 C 1.38317 * 119.21548 * 359.75163 * 18 11 10 20 20 N 1.31577 * 121.02836 * 0.02562 * 19 18 11 21 21 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 22 22 C 1.36943 * 119.99752 * 274.72222 * 21 3 2 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 3 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 3 25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47294 * 90.00155 * 26 24 22 28 28 H 1.48499 * 109.47218 * 210.00015 * 26 24 22 29 29 H 1.48496 * 109.47166 * 329.99846 * 26 24 22 30 30 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 31 31 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 32 32 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 34 34 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 35 35 H 1.08995 * 109.47415 * 304.99804 * 5 3 2 36 36 H 1.09008 * 109.47087 * 65.00143 * 5 3 2 37 37 H 0.96998 * 120.00120 * 0.02562 * 6 5 3 38 38 H 1.08004 * 120.54465 * 359.97438 * 10 9 7 39 39 H 1.07999 * 120.06037 * 359.97036 * 13 12 11 40 40 H 1.07996 * 119.93938 * 180.29944 * 14 13 12 41 41 H 1.07997 * 119.87432 * 179.70303 * 15 14 13 42 42 H 1.08007 * 119.93555 * 180.02562 * 16 15 14 43 43 H 1.07997 * 120.06215 * 179.97438 * 17 16 15 44 44 H 1.07999 * 120.39215 * 179.73250 * 18 11 10 45 45 H 1.07999 * 119.48657 * 180.02562 * 19 18 11 46 46 H 0.97001 * 120.00384 * 95.00578 * 21 3 2 47 47 H 0.96999 * 119.99739 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4442 -0.1257 6 7 4.0632 2.8167 -0.0060 7 6 5.3858 3.0629 -0.0869 8 8 6.1650 2.1466 -0.2595 9 6 5.8897 4.4511 0.0347 10 6 7.2566 4.6966 -0.0441 11 6 7.7143 6.0121 0.0679 12 6 9.1625 6.3240 -0.0155 13 6 10.0884 5.3004 -0.2072 14 6 11.4338 5.5971 -0.2898 15 6 11.8646 6.9061 -0.1709 16 6 10.9502 7.9255 0.0246 17 6 9.6021 7.6411 0.1031 18 6 6.7728 7.0254 0.2655 19 6 5.4313 6.6959 0.3376 20 7 5.0326 5.4472 0.2238 21 7 1.6525 2.0974 1.2518 22 6 0.4178 2.6784 1.3668 23 1 -0.2719 2.6498 0.5362 24 6 0.0527 3.3040 2.5509 25 7 0.8936 3.3393 3.5630 26 14 -1.6317 4.0959 2.7081 27 1 -2.6015 3.0979 3.2266 28 1 -1.5534 5.2440 3.6467 29 1 -2.0795 4.5755 1.3759 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.9955 0.8311 0.6660 36 1 3.8500 1.0376 -1.0960 37 1 3.4412 3.5482 0.1314 38 1 7.9526 3.8842 -0.1926 39 1 9.7535 4.2774 -0.2949 40 1 12.1519 4.8051 -0.4432 41 1 12.9187 7.1332 -0.2314 42 1 11.2921 8.9459 0.1163 43 1 8.8891 8.4377 0.2561 44 1 7.0887 8.0537 0.3610 45 1 4.6998 7.4757 0.4898 46 1 2.2720 2.1232 1.9978 47 1 0.6383 3.7761 4.3906 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269486472.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:15 Heat of formation + Delta-G solvation = 11.324067 kcal Electronic energy + Delta-G solvation = -27904.222557 eV Core-core repulsion = 24050.945834 eV Total energy + Delta-G solvation = -3853.276723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.78824 -40.43951 -39.54335 -38.25845 -35.40305 -34.71415 -34.08379 -32.79617 -31.75823 -31.47465 -30.61789 -29.49722 -26.31603 -25.38202 -25.09523 -24.01075 -22.92497 -22.66851 -21.64373 -21.11759 -19.45730 -18.93792 -18.10249 -17.64827 -17.01979 -16.78266 -16.58115 -16.40567 -16.27835 -15.78510 -15.47045 -15.41313 -15.13423 -14.88358 -14.81117 -14.56516 -14.26243 -14.14063 -14.10494 -13.85190 -13.66272 -13.11918 -12.97638 -12.79016 -12.77757 -12.35842 -12.20779 -12.09390 -11.89475 -11.83662 -11.63687 -11.46254 -11.42101 -11.31067 -10.88650 -10.58047 -10.37711 -10.01335 -9.89800 -9.38440 -8.95949 -7.85199 -5.12543 -0.57588 -0.27625 0.46191 0.81628 1.50720 1.51097 1.58904 1.68798 2.10175 2.61209 2.70959 3.03225 3.12308 3.35951 3.48696 3.62339 3.86413 3.88855 3.92629 3.94771 4.02871 4.06922 4.25977 4.37292 4.40600 4.47977 4.53558 4.55405 4.56500 4.64777 4.68307 4.73854 4.87178 4.98559 5.04097 5.09029 5.12134 5.13537 5.21265 5.42104 5.47795 5.55174 5.56562 5.57817 5.60903 5.62167 5.73755 6.02772 6.34269 6.41645 6.79321 7.10147 7.41856 8.13256 8.38349 9.37920 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015330 B = 0.002416 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.040363 B =11584.587025 C =13019.465516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.164 3.836 4 H 0.057 0.943 5 C 0.118 3.882 6 N -0.691 5.691 7 C 0.561 3.439 8 O -0.573 6.573 9 C 0.064 3.936 10 C -0.116 4.116 11 C -0.009 4.009 12 C -0.074 4.074 13 C -0.120 4.120 14 C -0.127 4.127 15 C -0.113 4.113 16 C -0.123 4.123 17 C -0.105 4.105 18 C -0.131 4.131 19 C 0.098 3.902 20 N -0.482 5.482 21 N -0.727 5.727 22 C -0.214 4.214 23 H 0.080 0.920 24 C -0.075 4.075 25 N -0.968 5.968 26 Si 0.961 3.039 27 H -0.293 1.293 28 H -0.302 1.302 29 H -0.269 1.269 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.046 0.954 35 H 0.056 0.944 36 H 0.085 0.915 37 H 0.416 0.584 38 H 0.146 0.854 39 H 0.122 0.878 40 H 0.142 0.858 41 H 0.149 0.851 42 H 0.153 0.847 43 H 0.149 0.851 44 H 0.182 0.818 45 H 0.192 0.808 46 H 0.371 0.629 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.045 9.756 -10.429 24.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C 0.055 3.945 4 H 0.075 0.925 5 C -0.006 4.006 6 N -0.340 5.340 7 C 0.347 3.653 8 O -0.454 6.454 9 C -0.073 4.073 10 C -0.137 4.137 11 C -0.017 4.017 12 C -0.074 4.074 13 C -0.138 4.138 14 C -0.145 4.145 15 C -0.131 4.131 16 C -0.141 4.141 17 C -0.123 4.123 18 C -0.151 4.151 19 C -0.061 4.061 20 N -0.194 5.194 21 N -0.368 5.368 22 C -0.346 4.346 23 H 0.098 0.902 24 C -0.267 4.267 25 N -0.620 5.620 26 Si 0.792 3.208 27 H -0.221 1.221 28 H -0.229 1.229 29 H -0.194 1.194 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.254 0.746 38 H 0.163 0.837 39 H 0.140 0.860 40 H 0.160 0.840 41 H 0.167 0.833 42 H 0.171 0.829 43 H 0.166 0.834 44 H 0.199 0.801 45 H 0.208 0.792 46 H 0.203 0.797 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 19.462 8.909 -10.576 23.874 hybrid contribution -0.396 0.517 0.898 1.109 sum 19.066 9.426 -9.678 23.367 Atomic orbital electron populations 1.21695 0.95865 1.00651 1.01798 1.21977 0.96729 0.96982 1.01176 1.20724 0.90629 0.93580 0.89522 0.92495 1.21723 0.94782 0.82239 1.01867 1.45891 1.06999 1.11178 1.69957 1.18236 0.82749 0.87587 0.76773 1.90698 1.56804 1.45642 1.52255 1.20917 0.91266 0.92905 1.02205 1.22185 0.95047 0.98171 0.98267 1.19325 0.93916 0.92265 0.96192 1.18725 0.89980 0.95077 1.03650 1.21485 0.93980 0.99092 0.99290 1.21399 0.95120 0.98107 0.99873 1.21675 1.01286 0.92497 0.97604 1.21490 0.92458 1.00916 0.99216 1.21536 0.97287 0.95066 0.98432 1.22799 0.92882 1.01769 0.97619 1.23325 0.95875 0.92520 0.94376 1.67543 1.39659 1.01598 1.10576 1.42561 1.15982 1.65996 1.12222 1.19491 0.92422 1.25137 0.97571 0.90211 1.25402 1.01096 1.03472 0.96711 1.69827 1.36832 1.50926 1.04396 0.85310 0.80705 0.77448 0.77346 1.22119 1.22912 1.19410 0.93316 0.93184 0.92705 0.90462 0.93483 0.92610 0.89650 0.74616 0.83671 0.86007 0.84005 0.83313 0.82921 0.83371 0.80112 0.79162 0.79731 0.94530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.92 9.18 71.98 0.66 -4.25 16 2 C -0.13 -4.30 5.61 30.60 0.17 -4.13 16 3 C 0.16 6.18 2.59 44.99 0.12 6.30 16 4 H 0.06 2.14 8.08 -2.39 -0.02 2.12 16 5 C 0.12 4.19 5.23 86.38 0.45 4.65 16 6 N -0.69 -26.16 5.38 -465.65 -2.50 -28.67 16 7 C 0.56 21.35 7.81 86.89 0.68 22.03 16 8 O -0.57 -23.57 16.32 -3.75 -0.06 -23.64 16 9 C 0.06 2.15 6.75 41.85 0.28 2.43 16 10 C -0.12 -3.30 9.02 22.84 0.21 -3.10 16 11 C -0.01 -0.21 5.91 -19.86 -0.12 -0.32 16 12 C -0.07 -1.42 5.88 -20.04 -0.12 -1.54 16 13 C -0.12 -2.27 9.45 22.48 0.21 -2.05 16 14 C -0.13 -1.84 10.03 22.24 0.22 -1.62 16 15 C -0.11 -1.29 10.04 22.31 0.22 -1.07 16 16 C -0.12 -1.37 10.03 22.24 0.22 -1.15 16 17 C -0.11 -1.46 9.45 22.48 0.21 -1.25 16 18 C -0.13 -2.47 9.51 22.65 0.22 -2.26 16 19 C 0.10 2.32 11.17 84.75 0.95 3.26 16 20 N -0.48 -15.58 9.53 -185.18 -1.76 -17.34 16 21 N -0.73 -34.58 4.50 -322.94 -1.45 -36.04 16 22 C -0.21 -11.15 7.76 84.03 0.65 -10.50 16 23 H 0.08 3.98 7.33 -2.91 -0.02 3.96 16 24 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 25 N -0.97 -58.51 13.06 21.65 0.28 -58.23 16 26 Si 0.96 45.53 29.55 68.60 2.03 47.56 16 27 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 28 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 29 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 30 H 0.05 2.04 6.01 -2.39 -0.01 2.02 16 31 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.09 2.70 8.14 -2.38 -0.02 2.68 16 37 H 0.42 16.80 7.46 -92.71 -0.69 16.11 16 38 H 0.15 4.06 5.92 -2.91 -0.02 4.04 16 39 H 0.12 2.36 6.30 -2.91 -0.02 2.34 16 40 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 41 H 0.15 0.90 8.06 -2.91 -0.02 0.88 16 42 H 0.15 0.84 8.06 -2.91 -0.02 0.81 16 43 H 0.15 1.30 6.29 -2.91 -0.02 1.28 16 44 H 0.18 1.82 6.33 -2.91 -0.02 1.80 16 45 H 0.19 3.30 8.06 -2.91 -0.02 3.28 16 46 H 0.37 19.77 7.80 -92.71 -0.72 19.05 16 47 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -70.12 391.50 1.83 -68.29 By element: Atomic # 1 Polarization: 46.74 SS G_CDS: -0.40 Total: 46.34 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 5.71 Total: 1.73 kcal Atomic # 7 Polarization: -134.84 SS G_CDS: -5.44 Total: -140.28 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.06 Total: -23.64 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -70.12 1.83 -68.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269486472.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.611 kcal (2) G-P(sol) polarization free energy of solvation -70.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds