Wall clock time and date at job start Tue Mar 31 2020 22:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47571 * 2 1 4 4 N 1.46497 * 109.47719 * 179.97438 * 3 2 1 5 5 C 1.36939 * 120.00296 * 179.97438 * 4 3 2 6 6 H 1.08003 * 119.99760 * 0.02562 * 5 4 3 7 7 C 1.38813 * 120.00043 * 180.02562 * 5 4 3 8 8 N 1.31612 * 119.99969 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99871 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47076 * 89.99909 * 9 7 5 11 11 H 1.48502 * 109.47092 * 209.99697 * 9 7 5 12 12 H 1.48497 * 109.47383 * 330.00140 * 9 7 5 13 13 N 1.46504 * 109.47281 * 119.99891 * 2 1 3 14 14 C 1.34771 * 119.99951 * 304.32464 * 13 2 1 15 15 O 1.21568 * 120.00226 * 354.95998 * 14 13 2 16 16 C 1.47766 * 120.00419 * 174.95885 * 14 13 2 17 17 C 1.40601 * 120.25997 * 359.97438 * 16 14 13 18 18 N 1.30803 * 121.53148 * 180.23075 * 17 16 14 19 19 C 1.33824 * 121.71681 * 359.48181 * 18 17 16 20 20 C 1.40523 * 120.80716 * 180.23826 * 19 18 17 21 21 C 1.36140 * 119.81135 * 180.27175 * 20 19 18 22 22 C 1.39336 * 121.08601 * 0.02562 * 21 20 19 23 23 C 1.36140 * 120.83978 * 359.97438 * 22 21 20 24 24 C 1.40545 * 119.61670 * 359.97438 * 23 22 21 25 25 C 1.39004 * 120.26779 * 179.97438 * 16 14 13 26 26 C 1.52999 * 109.47225 * 239.99717 * 2 1 3 27 27 C 1.53002 * 117.49707 * 12.86758 * 26 2 1 28 28 C 1.53006 * 117.49970 * 304.20646 * 26 2 1 29 29 H 1.08997 * 109.47007 * 299.99988 * 1 2 3 30 30 H 1.08995 * 109.46761 * 60.00449 * 1 2 3 31 31 H 1.08999 * 109.47096 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46854 * 300.00172 * 3 2 1 33 33 H 1.09000 * 109.47435 * 59.99859 * 3 2 1 34 34 H 0.97001 * 120.00051 * 0.02562 * 4 3 2 35 35 H 0.97000 * 120.00207 * 179.97438 * 8 7 5 36 36 H 0.96999 * 120.00339 * 124.31899 * 13 2 1 37 37 H 1.07997 * 119.23666 * 359.95356 * 17 16 14 38 38 H 1.08000 * 120.09437 * 0.25797 * 20 19 18 39 39 H 1.08005 * 119.45146 * 180.02562 * 21 20 19 40 40 H 1.08002 * 119.58302 * 180.02562 * 22 21 20 41 41 H 1.07999 * 120.19539 * 179.97438 * 23 22 21 42 42 H 1.08001 * 121.02287 * 0.04036 * 25 16 14 43 43 H 1.08999 * 115.55466 * 158.53876 * 26 2 1 44 44 H 1.08995 * 117.49813 * 0.02562 * 27 26 2 45 45 H 1.08997 * 117.49816 * 145.02281 * 27 26 2 46 46 H 1.09001 * 117.49987 * 214.97373 * 28 26 2 47 47 H 1.08998 * 117.49370 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1898 2.6283 0.0002 6 1 3.6498 3.5637 -0.0002 7 6 5.5779 2.6283 0.0002 8 7 6.2360 3.7681 0.0004 9 14 6.5119 1.0105 0.0002 10 1 6.7594 0.5819 -1.3999 11 1 7.8094 1.1880 0.7002 12 1 5.7093 -0.0245 0.7000 13 7 2.0184 -0.6906 1.1962 14 6 1.6225 -0.2832 2.4183 15 8 0.9345 0.7124 2.5339 16 6 2.0248 -1.0465 3.6179 17 6 2.8200 -2.1990 3.4907 18 7 3.1867 -2.8958 4.5352 19 6 2.8328 -2.5422 5.7764 20 6 3.2416 -3.3022 6.8854 21 6 2.8653 -2.9270 8.1388 22 6 2.0769 -1.7968 8.3453 23 6 1.6610 -1.0350 7.2964 24 6 2.0315 -1.3920 5.9886 25 6 1.6200 -0.6309 4.8811 26 6 2.0400 -0.7213 -1.2492 27 6 1.0281 -1.0131 -2.3590 28 6 1.5562 -2.1536 -1.4850 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 3.9901 0.6024 0.0006 35 1 7.2060 3.7681 0.0008 36 1 2.6266 -1.4411 1.1086 37 1 3.1317 -2.5189 2.5074 38 1 3.8524 -4.1815 6.7438 39 1 3.1831 -3.5151 8.9871 40 1 1.7928 -1.5211 9.3501 41 1 1.0498 -0.1613 7.4684 42 1 1.0084 0.2502 5.0078 43 1 3.0596 -0.4788 -1.5488 44 1 -0.0008 -0.6909 -2.1994 45 1 1.3820 -0.9630 -3.3887 46 1 2.2573 -2.8531 -1.9402 47 1 0.8742 -2.5817 -0.7504 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269638158.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:36 Heat of formation + Delta-G solvation = 70.006789 kcal Electronic energy + Delta-G solvation = -29373.302769 eV Core-core repulsion = 25522.570720 eV Total energy + Delta-G solvation = -3850.732049 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.16446 -40.10067 -38.07234 -37.02960 -34.87896 -33.69254 -33.59291 -31.76680 -30.80005 -30.30514 -29.65099 -26.20749 -25.01544 -24.27059 -23.53433 -22.34659 -22.31670 -21.85925 -20.90233 -19.09349 -18.43867 -17.99868 -17.71425 -17.18738 -16.22518 -15.76077 -15.18399 -15.04636 -14.83010 -14.70954 -14.42315 -14.27359 -14.17390 -13.85259 -13.65801 -13.24308 -13.13740 -12.82635 -12.43867 -12.27747 -12.12509 -12.04203 -11.99595 -11.76543 -11.69986 -11.18808 -11.03675 -10.89201 -10.83401 -10.65351 -10.34747 -10.22843 -10.02624 -9.92748 -9.55514 -9.41608 -9.05846 -8.81673 -8.77414 -8.51725 -7.14473 -5.72003 -3.05742 0.04381 0.40822 1.66859 2.41765 3.08717 3.27574 3.35887 3.36983 3.45198 3.89958 3.94385 3.98341 4.33575 4.49590 4.56959 4.59935 4.61342 4.64499 4.78928 4.86965 4.93589 4.98716 5.03007 5.16602 5.20071 5.27096 5.50652 5.55257 5.59186 5.64003 5.65054 5.69596 5.79857 5.85134 5.90921 5.93049 6.03471 6.08191 6.12986 6.14198 6.23488 6.29929 6.41057 6.51357 6.52913 6.79542 6.97701 7.62455 7.67588 8.05675 8.35982 8.47081 9.26562 9.98646 10.19277 11.47001 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009917 B = 0.003771 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.788799 B = 7423.990202 C = 8737.125715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.199 3.801 3 C 0.150 3.850 4 N -0.750 5.750 5 C -0.235 4.235 6 H 0.090 0.910 7 C 0.003 3.997 8 N -0.936 5.936 9 Si 0.881 3.119 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.279 1.279 13 N -0.707 5.707 14 C 0.570 3.430 15 O -0.523 6.523 16 C -0.185 4.185 17 C 0.163 3.837 18 N -0.477 5.477 19 C 0.140 3.860 20 C -0.099 4.099 21 C -0.094 4.094 22 C -0.123 4.123 23 C -0.084 4.084 24 C -0.112 4.112 25 C 0.012 3.988 26 C -0.157 4.157 27 C -0.167 4.167 28 C -0.183 4.183 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.034 0.966 33 H 0.052 0.948 34 H 0.358 0.642 35 H 0.258 0.742 36 H 0.395 0.605 37 H 0.160 0.840 38 H 0.137 0.863 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.134 0.866 42 H 0.155 0.845 43 H 0.117 0.883 44 H 0.102 0.898 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.431 -17.403 10.398 23.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.114 3.886 3 C 0.022 3.978 4 N -0.396 5.396 5 C -0.365 4.365 6 H 0.107 0.893 7 C -0.193 4.193 8 N -0.585 5.585 9 Si 0.712 3.288 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.206 1.206 13 N -0.358 5.358 14 C 0.356 3.644 15 O -0.400 6.400 16 C -0.191 4.191 17 C -0.011 4.011 18 N -0.184 5.184 19 C 0.019 3.981 20 C -0.117 4.117 21 C -0.114 4.114 22 C -0.141 4.141 23 C -0.103 4.103 24 C -0.114 4.114 25 C -0.015 4.015 26 C -0.176 4.176 27 C -0.205 4.205 28 C -0.220 4.220 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.190 0.810 35 H 0.068 0.932 36 H 0.230 0.770 37 H 0.177 0.823 38 H 0.154 0.846 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.152 0.848 42 H 0.172 0.828 43 H 0.135 0.865 44 H 0.120 0.880 45 H 0.113 0.887 46 H 0.112 0.888 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.377 -17.217 10.462 23.645 hybrid contribution 0.889 -0.676 -0.037 1.118 sum -11.487 -17.893 10.425 23.681 Atomic orbital electron populations 1.22277 0.94146 1.01843 1.03951 1.20131 0.93621 0.93121 0.81720 1.21045 0.85095 0.91575 1.00103 1.42593 1.00760 1.05052 1.91163 1.19074 0.89454 0.85906 1.42067 0.89265 1.24634 0.96073 0.96053 1.02507 1.69692 1.06863 1.23761 1.58148 0.86595 0.79872 0.84725 0.77621 1.21138 1.21819 1.20576 1.45881 1.49184 1.35487 1.05258 1.17775 0.80147 0.83922 0.82571 1.90732 1.38597 1.24658 1.86056 1.21061 1.03770 0.99080 0.95164 1.23047 0.90741 0.89426 0.97855 1.67946 1.21464 1.30865 0.98169 1.19020 0.94526 0.92696 0.91880 1.20830 1.00266 0.99912 0.90701 1.20977 0.96774 0.96567 0.97055 1.20940 0.98417 0.95376 0.99366 1.21095 0.98719 0.99515 0.90932 1.18849 1.00770 0.97039 0.94759 1.21982 0.92807 0.96669 0.90021 1.22552 1.00658 0.97448 0.96904 1.23068 0.99308 1.02308 0.95775 1.22989 1.04070 0.91329 1.03618 0.89987 0.91216 0.92793 0.94833 0.92982 0.80964 0.93185 0.76962 0.82285 0.84551 0.85154 0.85285 0.84792 0.82775 0.86516 0.87998 0.88701 0.88846 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 6.98 37.16 0.26 -1.93 16 2 C 0.20 3.04 0.54 -131.82 -0.07 2.97 16 3 C 0.15 3.03 5.03 -4.05 -0.02 3.01 16 4 N -0.75 -17.93 4.84 -59.91 -0.29 -18.22 16 5 C -0.23 -6.81 10.47 -15.06 -0.16 -6.97 16 6 H 0.09 2.80 8.06 -52.48 -0.42 2.38 16 7 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 8 N -0.94 -30.02 13.97 55.49 0.78 -29.25 16 9 Si 0.88 22.37 27.74 -169.99 -4.71 17.66 16 10 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 12 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 13 N -0.71 -10.35 4.68 -48.57 -0.23 -10.58 16 14 C 0.57 9.12 7.18 -12.37 -0.09 9.03 16 15 O -0.52 -9.77 12.62 5.31 0.07 -9.70 16 16 C -0.19 -2.63 5.89 -104.83 -0.62 -3.24 16 17 C 0.16 2.14 10.68 -17.10 -0.18 1.95 16 18 N -0.48 -6.56 10.30 -10.67 -0.11 -6.67 16 19 C 0.14 1.80 6.61 -84.79 -0.56 1.24 16 20 C -0.10 -1.01 9.97 -39.47 -0.39 -1.40 16 21 C -0.09 -0.76 9.94 -39.93 -0.40 -1.15 16 22 C -0.12 -0.98 9.96 -39.93 -0.40 -1.38 16 23 C -0.08 -0.80 9.77 -39.47 -0.39 -1.18 16 24 C -0.11 -1.37 5.74 -106.81 -0.61 -1.98 16 25 C 0.01 0.16 9.46 -38.43 -0.36 -0.21 16 26 C -0.16 -2.14 4.84 -90.62 -0.44 -2.58 16 27 C -0.17 -1.87 9.64 -26.69 -0.26 -2.13 16 28 C -0.18 -1.92 9.83 -26.69 -0.26 -2.18 16 29 H 0.08 1.25 6.03 -51.93 -0.31 0.94 16 30 H 0.07 0.85 6.77 -51.93 -0.35 0.50 16 31 H 0.05 0.62 6.98 -51.93 -0.36 0.26 16 32 H 0.03 0.69 8.14 -51.92 -0.42 0.27 16 33 H 0.05 1.18 6.32 -51.93 -0.33 0.86 16 34 H 0.36 8.20 4.48 -40.82 -0.18 8.01 16 35 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 36 H 0.40 4.97 6.52 -40.82 -0.27 4.71 16 37 H 0.16 1.69 6.39 -52.49 -0.34 1.35 16 38 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 40 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 41 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.15 1.88 7.70 -52.49 -0.40 1.48 16 43 H 0.12 1.87 7.09 -51.93 -0.37 1.50 16 44 H 0.10 1.05 5.88 -51.93 -0.31 0.75 16 45 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.09 0.91 7.34 -51.93 -0.38 0.53 16 LS Contribution 377.43 15.07 5.69 5.69 Total: -1.00 -35.30 377.43 -10.01 -45.31 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -6.15 Total: 13.91 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -5.04 Total: -8.15 kcal Atomic # 7 Polarization: -64.86 SS G_CDS: 0.15 Total: -64.71 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.07 Total: -9.70 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.71 Total: 17.66 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.30 -10.01 -45.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269638158.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.317 kcal (2) G-P(sol) polarization free energy of solvation -35.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds