Wall clock time and date at job start Tue Mar 31 2020 22:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47571 * 2 1 4 4 N 1.46497 * 109.47719 * 179.97438 * 3 2 1 5 5 C 1.36939 * 120.00296 * 179.97438 * 4 3 2 6 6 H 1.08003 * 119.99760 * 0.02562 * 5 4 3 7 7 C 1.38813 * 120.00043 * 180.02562 * 5 4 3 8 8 N 1.31612 * 119.99969 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99871 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47076 * 89.99909 * 9 7 5 11 11 H 1.48502 * 109.47092 * 209.99697 * 9 7 5 12 12 H 1.48497 * 109.47383 * 330.00140 * 9 7 5 13 13 N 1.46504 * 109.47281 * 119.99891 * 2 1 3 14 14 C 1.34771 * 119.99951 * 304.32464 * 13 2 1 15 15 O 1.21568 * 120.00226 * 354.95998 * 14 13 2 16 16 C 1.47766 * 120.00419 * 174.95885 * 14 13 2 17 17 C 1.40601 * 120.25997 * 359.97438 * 16 14 13 18 18 N 1.30803 * 121.53148 * 180.23075 * 17 16 14 19 19 C 1.33824 * 121.71681 * 359.48181 * 18 17 16 20 20 C 1.40523 * 120.80716 * 180.23826 * 19 18 17 21 21 C 1.36140 * 119.81135 * 180.27175 * 20 19 18 22 22 C 1.39336 * 121.08601 * 0.02562 * 21 20 19 23 23 C 1.36140 * 120.83978 * 359.97438 * 22 21 20 24 24 C 1.40545 * 119.61670 * 359.97438 * 23 22 21 25 25 C 1.39004 * 120.26779 * 179.97438 * 16 14 13 26 26 C 1.52999 * 109.47225 * 239.99717 * 2 1 3 27 27 C 1.53002 * 117.49707 * 12.86758 * 26 2 1 28 28 C 1.53006 * 117.49970 * 304.20646 * 26 2 1 29 29 H 1.08997 * 109.47007 * 299.99988 * 1 2 3 30 30 H 1.08995 * 109.46761 * 60.00449 * 1 2 3 31 31 H 1.08999 * 109.47096 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46854 * 300.00172 * 3 2 1 33 33 H 1.09000 * 109.47435 * 59.99859 * 3 2 1 34 34 H 0.97001 * 120.00051 * 0.02562 * 4 3 2 35 35 H 0.97000 * 120.00207 * 179.97438 * 8 7 5 36 36 H 0.96999 * 120.00339 * 124.31899 * 13 2 1 37 37 H 1.07997 * 119.23666 * 359.95356 * 17 16 14 38 38 H 1.08000 * 120.09437 * 0.25797 * 20 19 18 39 39 H 1.08005 * 119.45146 * 180.02562 * 21 20 19 40 40 H 1.08002 * 119.58302 * 180.02562 * 22 21 20 41 41 H 1.07999 * 120.19539 * 179.97438 * 23 22 21 42 42 H 1.08001 * 121.02287 * 0.04036 * 25 16 14 43 43 H 1.08999 * 115.55466 * 158.53876 * 26 2 1 44 44 H 1.08995 * 117.49813 * 0.02562 * 27 26 2 45 45 H 1.08997 * 117.49816 * 145.02281 * 27 26 2 46 46 H 1.09001 * 117.49987 * 214.97373 * 28 26 2 47 47 H 1.08998 * 117.49370 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1898 2.6283 0.0002 6 1 3.6498 3.5637 -0.0002 7 6 5.5779 2.6283 0.0002 8 7 6.2360 3.7681 0.0004 9 14 6.5119 1.0105 0.0002 10 1 6.7594 0.5819 -1.3999 11 1 7.8094 1.1880 0.7002 12 1 5.7093 -0.0245 0.7000 13 7 2.0184 -0.6906 1.1962 14 6 1.6225 -0.2832 2.4183 15 8 0.9345 0.7124 2.5339 16 6 2.0248 -1.0465 3.6179 17 6 2.8200 -2.1990 3.4907 18 7 3.1867 -2.8958 4.5352 19 6 2.8328 -2.5422 5.7764 20 6 3.2416 -3.3022 6.8854 21 6 2.8653 -2.9270 8.1388 22 6 2.0769 -1.7968 8.3453 23 6 1.6610 -1.0350 7.2964 24 6 2.0315 -1.3920 5.9886 25 6 1.6200 -0.6309 4.8811 26 6 2.0400 -0.7213 -1.2492 27 6 1.0281 -1.0131 -2.3590 28 6 1.5562 -2.1536 -1.4850 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 3.9901 0.6024 0.0006 35 1 7.2060 3.7681 0.0008 36 1 2.6266 -1.4411 1.1086 37 1 3.1317 -2.5189 2.5074 38 1 3.8524 -4.1815 6.7438 39 1 3.1831 -3.5151 8.9871 40 1 1.7928 -1.5211 9.3501 41 1 1.0498 -0.1613 7.4684 42 1 1.0084 0.2502 5.0078 43 1 3.0596 -0.4788 -1.5488 44 1 -0.0008 -0.6909 -2.1994 45 1 1.3820 -0.9630 -3.3887 46 1 2.2573 -2.8531 -1.9402 47 1 0.8742 -2.5817 -0.7504 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269638158.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:35 Heat of formation + Delta-G solvation = 46.747351 kcal Electronic energy + Delta-G solvation = -29374.311374 eV Core-core repulsion = 25522.570720 eV Total energy + Delta-G solvation = -3851.740654 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.12856 -41.21156 -39.15358 -37.90507 -36.53073 -35.15077 -34.53131 -33.49105 -32.22751 -31.13180 -30.76854 -27.82429 -26.12346 -25.14919 -24.74344 -23.87541 -23.14342 -23.12862 -21.93697 -20.42414 -19.75063 -19.38972 -18.92222 -18.10942 -17.15186 -16.88428 -16.61305 -16.51391 -16.14562 -15.62894 -15.59933 -15.37975 -15.24549 -15.05794 -14.77123 -14.51054 -14.42395 -14.18913 -13.88650 -13.88204 -13.42340 -13.21672 -12.87787 -12.79783 -12.74291 -12.45545 -12.36433 -12.30717 -12.08745 -12.01573 -11.85902 -11.61085 -11.31267 -11.12862 -11.02845 -10.92316 -10.48945 -10.12219 -9.84544 -9.32783 -9.28021 -8.05057 -5.37290 -0.84243 -0.45598 0.81554 1.29865 1.36004 1.42726 1.50626 1.96991 2.24018 2.44479 2.97765 3.03527 3.11885 3.25970 3.50899 3.51868 3.56404 3.67229 3.71934 3.76888 3.85112 3.96003 4.13126 4.17678 4.19363 4.29464 4.36849 4.39580 4.56236 4.67951 4.76864 4.80777 4.85236 4.85637 4.92120 4.96762 5.02515 5.04359 5.09339 5.25554 5.32105 5.33874 5.38844 5.41741 5.43475 5.57460 5.72932 5.82127 6.18105 6.51380 6.70364 7.05494 7.17443 7.80409 8.03471 9.17213 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009917 B = 0.003771 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.788799 B = 7423.990202 C = 8737.125715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.209 3.791 3 C 0.149 3.851 4 N -0.744 5.744 5 C -0.232 4.232 6 H 0.047 0.953 7 C -0.064 4.064 8 N -0.986 5.986 9 Si 0.953 3.047 10 H -0.270 1.270 11 H -0.298 1.298 12 H -0.251 1.251 13 N -0.701 5.701 14 C 0.567 3.433 15 O -0.560 6.560 16 C -0.206 4.206 17 C 0.157 3.843 18 N -0.491 5.491 19 C 0.117 3.883 20 C -0.118 4.118 21 C -0.078 4.078 22 C -0.114 4.114 23 C -0.096 4.096 24 C -0.127 4.127 25 C 0.007 3.993 26 C -0.184 4.184 27 C -0.161 4.161 28 C -0.154 4.154 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.028 0.972 33 H 0.023 0.977 34 H 0.366 0.634 35 H 0.257 0.743 36 H 0.407 0.593 37 H 0.180 0.820 38 H 0.147 0.853 39 H 0.167 0.833 40 H 0.164 0.836 41 H 0.151 0.849 42 H 0.153 0.847 43 H 0.093 0.907 44 H 0.112 0.888 45 H 0.101 0.899 46 H 0.109 0.891 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.834 -21.261 11.682 27.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.124 3.876 3 C 0.022 3.978 4 N -0.390 5.390 5 C -0.363 4.363 6 H 0.066 0.934 7 C -0.255 4.255 8 N -0.636 5.636 9 Si 0.780 3.220 10 H -0.196 1.196 11 H -0.225 1.225 12 H -0.175 1.175 13 N -0.352 5.352 14 C 0.354 3.646 15 O -0.440 6.440 16 C -0.211 4.211 17 C -0.016 4.016 18 N -0.199 5.199 19 C -0.004 4.004 20 C -0.136 4.136 21 C -0.098 4.098 22 C -0.131 4.131 23 C -0.115 4.115 24 C -0.129 4.129 25 C -0.020 4.020 26 C -0.203 4.203 27 C -0.199 4.199 28 C -0.191 4.191 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.046 0.954 33 H 0.041 0.959 34 H 0.200 0.800 35 H 0.066 0.934 36 H 0.244 0.756 37 H 0.197 0.803 38 H 0.164 0.836 39 H 0.184 0.816 40 H 0.182 0.818 41 H 0.169 0.831 42 H 0.171 0.829 43 H 0.112 0.888 44 H 0.130 0.870 45 H 0.120 0.880 46 H 0.127 0.873 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.814 -21.129 11.738 27.357 hybrid contribution 0.942 0.617 -0.273 1.159 sum -11.872 -20.512 11.464 26.327 Atomic orbital electron populations 1.22206 0.92457 1.03305 1.03404 1.19930 0.94707 0.90011 0.82993 1.21101 0.82981 0.95507 0.98253 1.42461 1.02166 1.03609 1.90768 1.19014 0.89839 0.86346 1.41111 0.93446 1.25494 0.97015 1.00300 1.02690 1.69893 1.07089 1.26744 1.59920 0.85433 0.77847 0.80258 0.78464 1.19584 1.22465 1.17547 1.45854 1.49123 1.35484 1.04748 1.18122 0.79504 0.83527 0.83403 1.90714 1.40317 1.26303 1.86631 1.20967 1.05527 1.00003 0.94615 1.23277 0.90608 0.89034 0.98722 1.67972 1.21968 1.31217 0.98736 1.19469 0.95074 0.93457 0.92368 1.21082 1.01225 1.00439 0.90893 1.21454 0.94839 0.96209 0.97253 1.21411 0.96812 0.94409 1.00485 1.21399 0.99213 1.00608 0.90231 1.19045 1.01223 0.97047 0.95607 1.22133 0.92639 0.96773 0.90449 1.22321 1.00228 1.00590 0.97135 1.23202 0.99039 1.02113 0.95506 1.23086 1.03449 0.89764 1.02821 0.92216 0.90129 0.90193 0.95412 0.95945 0.80009 0.93375 0.75610 0.80340 0.83570 0.81557 0.81806 0.83095 0.82892 0.88841 0.87002 0.88037 0.87301 0.87436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 6.98 71.98 0.50 -3.52 16 2 C 0.21 6.29 0.54 3.60 0.00 6.30 16 3 C 0.15 6.26 5.03 86.38 0.43 6.69 16 4 N -0.74 -36.33 4.84 -343.45 -1.66 -37.99 16 5 C -0.23 -14.01 10.47 84.03 0.88 -13.13 16 6 H 0.05 3.19 8.06 -2.91 -0.02 3.17 16 7 C -0.06 -3.91 5.50 84.86 0.47 -3.44 16 8 N -0.99 -65.47 13.97 21.65 0.30 -65.17 16 9 Si 0.95 46.45 27.74 68.60 1.90 48.35 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 12 H -0.25 -10.91 6.52 99.48 0.65 -10.26 16 13 N -0.70 -20.14 4.68 -425.84 -1.99 -22.14 16 14 C 0.57 18.54 7.18 86.76 0.62 19.16 16 15 O -0.56 -21.94 12.62 -3.93 -0.05 -21.99 16 16 C -0.21 -5.92 5.89 -20.00 -0.12 -6.04 16 17 C 0.16 4.05 10.68 85.42 0.91 4.96 16 18 N -0.49 -13.19 10.30 -187.68 -1.93 -15.13 16 19 C 0.12 2.90 6.61 40.27 0.27 3.17 16 20 C -0.12 -2.17 9.97 22.34 0.22 -1.95 16 21 C -0.08 -0.98 9.94 22.05 0.22 -0.76 16 22 C -0.11 -1.40 9.96 22.05 0.22 -1.18 16 23 C -0.10 -1.65 9.77 22.34 0.22 -1.43 16 24 C -0.13 -3.04 5.74 -21.28 -0.12 -3.17 16 25 C 0.01 0.18 9.46 23.01 0.22 0.40 16 26 C -0.18 -4.70 4.84 -10.79 -0.05 -4.75 16 27 C -0.16 -3.16 9.64 30.62 0.30 -2.86 16 28 C -0.15 -2.68 9.83 30.62 0.30 -2.38 16 29 H 0.06 1.85 6.03 -2.39 -0.01 1.83 16 30 H 0.08 1.88 6.77 -2.39 -0.02 1.86 16 31 H 0.08 1.65 6.98 -2.39 -0.02 1.63 16 32 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.02 1.09 6.32 -2.39 -0.02 1.07 16 34 H 0.37 16.59 4.48 -92.71 -0.42 16.17 16 35 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 36 H 0.41 9.61 6.52 -92.71 -0.60 9.01 16 37 H 0.18 3.56 6.39 -2.91 -0.02 3.54 16 38 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 39 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 40 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 41 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 42 H 0.15 3.97 7.70 -2.91 -0.02 3.94 16 43 H 0.09 2.87 7.09 -2.39 -0.02 2.85 16 44 H 0.11 1.97 5.88 -2.39 -0.01 1.96 16 45 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.11 1.63 7.34 -2.39 -0.02 1.61 16 Total: -1.00 -81.46 377.43 2.00 -79.46 By element: Atomic # 1 Polarization: 38.57 SS G_CDS: -0.06 Total: 38.51 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 5.49 Total: -3.92 kcal Atomic # 7 Polarization: -135.13 SS G_CDS: -5.29 Total: -140.42 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.05 Total: -21.99 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 1.90 Total: 48.35 kcal Total: -81.46 2.00 -79.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269638158.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.204 kcal (2) G-P(sol) polarization free energy of solvation -81.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds