Wall clock time and date at job start Tue Mar 31 2020 22:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30276 * 126.28250 * 2 1 4 4 N 1.28674 * 109.37873 * 179.97438 * 3 2 1 5 5 C 1.30272 * 109.38187 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.28028 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.47385 * 90.02472 * 6 5 4 8 8 O 1.21288 * 119.99699 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00263 * 180.02562 * 7 6 5 10 10 C 1.46495 * 119.99814 * 359.97438 * 9 7 6 11 11 C 1.46502 * 119.99726 * 179.97438 * 9 7 6 12 12 H 1.08995 * 109.47848 * 359.97438 * 11 9 7 13 13 C 1.53000 * 109.47114 * 239.99419 * 11 9 7 14 14 C 1.53008 * 109.46701 * 120.00017 * 11 9 7 15 15 N 1.46894 * 109.47331 * 304.99780 * 14 11 9 16 16 C 1.46897 * 111.00255 * 179.97438 * 15 14 11 17 17 C 1.50695 * 109.47426 * 179.97438 * 16 15 14 18 18 O 1.21296 * 119.99991 * 0.02562 * 17 16 15 19 19 N 1.34772 * 120.00418 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00536 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99637 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00221 * 180.02562 * 20 19 17 23 23 N 1.31409 * 119.99685 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00053 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46989 * 90.00073 * 24 22 20 26 26 H 1.48493 * 109.47201 * 210.00168 * 24 22 20 27 27 H 1.48498 * 109.47239 * 330.00346 * 24 22 20 28 28 O 1.34364 * 107.43764 * 359.97438 * 5 4 3 29 29 H 1.08997 * 109.47444 * 90.01974 * 1 2 3 30 30 H 1.09002 * 109.46698 * 210.02579 * 1 2 3 31 31 H 1.09002 * 109.47090 * 330.01523 * 1 2 3 32 32 H 1.08995 * 109.47102 * 210.02300 * 6 5 4 33 33 H 1.09003 * 109.47108 * 330.02056 * 6 5 4 34 34 H 1.08995 * 109.47587 * 90.00126 * 10 9 7 35 35 H 1.09000 * 109.46834 * 210.00098 * 10 9 7 36 36 H 1.09005 * 109.47270 * 329.99652 * 10 9 7 37 37 H 1.08998 * 109.47249 * 180.02562 * 13 11 9 38 38 H 1.09003 * 109.47456 * 300.00705 * 13 11 9 39 39 H 1.09006 * 109.46818 * 60.00579 * 13 11 9 40 40 H 1.09008 * 109.46610 * 65.00131 * 14 11 9 41 41 H 1.08998 * 109.46623 * 184.99562 * 14 11 9 42 42 H 1.00907 * 110.99748 * 56.04269 * 15 14 11 43 43 H 1.09002 * 109.47349 * 300.00351 * 16 15 14 44 44 H 1.09007 * 109.46950 * 59.99850 * 16 15 14 45 45 H 0.97000 * 119.99868 * 0.02562 * 19 17 16 46 46 H 0.97002 * 119.99480 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5091 0.6760 0.0005 5 6 3.5654 -0.6255 0.0004 6 6 4.8176 -1.4639 0.0014 7 6 5.2334 -1.7441 1.4225 8 8 4.5777 -1.3057 2.3438 9 7 6.3345 -2.4810 1.6696 10 6 7.1268 -3.0100 0.5568 11 6 6.7389 -2.7529 3.0512 12 1 6.0339 -2.2814 3.7358 13 6 8.1399 -2.1874 3.2932 14 6 6.7505 -4.2640 3.2911 15 7 5.4381 -4.8251 2.9438 16 6 5.4121 -6.2776 3.1615 17 6 4.0530 -6.8162 2.7959 18 8 3.1909 -6.0640 2.3931 19 7 3.7954 -8.1335 2.9164 20 6 2.5591 -8.6236 2.5833 21 1 1.7915 -7.9538 2.2247 22 6 2.2934 -9.9817 2.7081 23 7 1.1082 -10.4513 2.3893 24 14 3.6208 -11.1400 3.3292 25 1 3.5373 -11.2409 4.8084 26 1 3.4251 -12.4842 2.7294 27 1 4.9555 -10.6155 2.9435 28 8 2.3021 -1.0832 0.0002 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3633 0.8901 0.5136 32 1 4.6250 -2.4052 -0.5131 33 1 5.6153 -0.9262 -0.5113 34 1 7.8948 -2.2871 0.2816 35 1 7.5993 -3.9446 0.8592 36 1 6.4760 -3.1920 -0.2985 37 1 8.4410 -2.3901 4.3210 38 1 8.8452 -2.6586 2.6087 39 1 8.1316 -1.1109 3.1223 40 1 7.5186 -4.7246 2.6698 41 1 6.9646 -4.4635 4.3411 42 1 5.1878 -4.5976 1.9931 43 1 6.1709 -6.7519 2.5390 44 1 5.6172 -6.4915 4.2105 45 1 4.4847 -8.7350 3.2389 46 1 0.9226 -11.3993 2.4768 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270957019.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:27 Heat of formation + Delta-G solvation = -16.803643 kcal Electronic energy + Delta-G solvation = -29649.799170 eV Core-core repulsion = 25384.453475 eV Total energy + Delta-G solvation = -4265.345695 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.27312 -40.36301 -38.50817 -37.11507 -36.19578 -34.80995 -33.96102 -33.72533 -32.24632 -31.66925 -30.63154 -27.80645 -27.45625 -27.17510 -25.06459 -23.51420 -23.06498 -22.63261 -21.49807 -19.50725 -19.24550 -18.36836 -18.02095 -17.27522 -17.06035 -16.47793 -16.27697 -15.84055 -15.56377 -14.96638 -14.87358 -14.74208 -14.35837 -14.11606 -13.82638 -13.63181 -13.37269 -13.33023 -13.16911 -12.99525 -12.81553 -12.72063 -12.56932 -12.45483 -12.39631 -12.27992 -11.94608 -11.91044 -11.81901 -11.58902 -11.21768 -11.07699 -11.05399 -10.62478 -10.15104 -10.00146 -9.59840 -9.51687 -9.00315 -8.58234 -8.21776 -8.15538 -6.33451 -3.84927 1.03803 2.07881 2.26740 2.39627 2.75742 2.99115 3.04478 3.12435 3.61964 3.71143 3.96958 4.07725 4.17629 4.22218 4.56759 4.69850 4.72628 4.78442 4.79407 4.96673 5.01740 5.07542 5.08315 5.15020 5.18947 5.23799 5.26288 5.32372 5.40848 5.41454 5.46410 5.53098 5.58312 5.70052 5.74974 5.80706 5.88807 5.95546 6.28896 7.03366 7.05596 7.51670 7.56061 7.91658 8.12076 8.21878 8.57494 8.92695 9.39912 9.80447 10.79723 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009956 B = 0.002973 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.785571 B = 9415.159009 C =11737.474015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.169 3.831 3 N -0.293 5.293 4 N -0.277 5.277 5 C 0.183 3.817 6 C -0.046 4.046 7 C 0.525 3.475 8 O -0.515 6.515 9 N -0.608 5.608 10 C 0.067 3.933 11 C 0.138 3.862 12 H 0.112 0.888 13 C -0.158 4.158 14 C 0.049 3.951 15 N -0.664 5.664 16 C 0.048 3.952 17 C 0.449 3.551 18 O -0.563 6.563 19 N -0.591 5.591 20 C -0.305 4.305 21 H 0.119 0.881 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.270 1.270 28 O -0.213 6.213 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.130 0.870 33 H 0.139 0.861 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.030 0.970 41 H 0.084 0.916 42 H 0.348 0.652 43 H 0.043 0.957 44 H 0.088 0.912 45 H 0.370 0.630 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.243 15.277 -5.215 21.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.042 4.042 3 N -0.141 5.141 4 N -0.124 5.124 5 C -0.029 4.029 6 C -0.087 4.087 7 C 0.310 3.690 8 O -0.389 6.389 9 N -0.343 5.343 10 C -0.076 4.076 11 C 0.035 3.965 12 H 0.129 0.871 13 C -0.217 4.217 14 C -0.081 4.081 15 N -0.297 5.297 16 C -0.085 4.085 17 C 0.234 3.766 18 O -0.444 6.444 19 N -0.230 5.230 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 O -0.091 6.091 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.148 0.852 33 H 0.157 0.843 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.048 0.952 41 H 0.103 0.897 42 H 0.168 0.832 43 H 0.061 0.939 44 H 0.106 0.894 45 H 0.203 0.797 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.217 17.212 -4.404 22.143 hybrid contribution 1.250 -2.861 -0.290 3.136 sum 14.467 14.350 -4.694 20.911 Atomic orbital electron populations 1.20391 0.80136 1.06055 1.05201 1.28013 0.97910 0.79479 0.98777 1.74355 0.95932 1.25598 1.18180 1.74306 1.12518 1.08869 1.16714 1.26772 0.84877 0.91163 1.00083 1.20138 0.90136 1.00667 0.97748 1.19943 0.80504 0.78454 0.90061 1.90790 1.52157 1.50147 1.45812 1.47744 1.26548 1.52698 1.07340 1.21907 0.96369 0.99924 0.89379 1.21210 0.97229 0.95215 0.82822 0.87051 1.22094 0.95613 1.01523 1.02437 1.22355 0.90415 0.93725 1.01628 1.59972 1.27044 1.10522 1.32126 1.21718 0.96306 0.88581 1.01862 1.19710 0.89418 0.82702 0.84736 1.90581 1.47504 1.56785 1.49548 1.42202 1.13835 1.06761 1.60224 1.19430 0.89109 0.93441 1.41402 0.86325 1.25039 0.96631 0.96799 0.97692 1.69623 1.20440 1.14712 1.47341 0.86662 0.81382 0.81451 0.79809 1.19586 1.20193 1.19578 1.84819 1.17222 1.38118 1.68957 0.88272 0.88436 0.87541 0.85189 0.84326 0.91916 0.90571 0.90659 0.91077 0.92288 0.91936 0.95179 0.89739 0.83207 0.93926 0.89405 0.79722 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.48 10.51 36.00 0.38 -0.10 16 2 C 0.17 2.25 8.48 -12.94 -0.11 2.14 16 3 N -0.29 -4.51 12.22 32.55 0.40 -4.11 16 4 N -0.28 -4.34 12.22 32.55 0.40 -3.94 16 5 C 0.18 2.58 6.97 -12.94 -0.09 2.49 16 6 C -0.05 -0.45 4.88 -29.04 -0.14 -0.59 16 7 C 0.52 6.75 7.67 -10.99 -0.08 6.67 16 8 O -0.51 -9.24 15.36 5.55 0.09 -9.15 16 9 N -0.61 -6.00 1.83 -173.93 -0.32 -6.32 16 10 C 0.07 0.39 9.28 59.84 0.56 0.95 16 11 C 0.14 1.43 2.95 -67.92 -0.20 1.23 16 12 H 0.11 1.52 6.90 -51.93 -0.36 1.16 16 13 C -0.16 -1.15 9.19 37.16 0.34 -0.80 16 14 C 0.05 0.53 4.98 -3.82 -0.02 0.51 16 15 N -0.66 -10.28 6.12 -115.06 -0.70 -10.98 16 16 C 0.05 0.78 6.17 -4.98 -0.03 0.75 16 17 C 0.45 10.18 7.82 -10.99 -0.09 10.10 16 18 O -0.56 -15.29 15.78 5.54 0.09 -15.20 16 19 N -0.59 -13.99 5.09 -10.96 -0.06 -14.05 16 20 C -0.31 -8.62 10.16 -14.93 -0.15 -8.77 16 21 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.65 13.96 55.50 0.77 -24.87 16 24 Si 0.88 19.18 27.74 -169.99 -4.71 14.46 16 25 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 26 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 27 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 28 O -0.21 -3.20 10.87 5.37 0.06 -3.14 16 29 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.13 0.97 7.40 -51.93 -0.38 0.59 16 33 H 0.14 0.86 8.11 -51.93 -0.42 0.44 16 34 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.42 6.53 -51.93 -0.34 0.08 16 36 H 0.07 0.34 6.44 -51.93 -0.33 0.00 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.34 7.67 -51.93 -0.40 -0.05 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.03 0.27 6.88 -51.92 -0.36 -0.09 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.35 5.65 7.56 -39.29 -0.30 5.36 16 43 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.37 7.65 5.76 -40.82 -0.24 7.41 16 46 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 388.71 15.07 5.86 5.86 Total: -1.00 -40.04 388.71 -4.35 -44.39 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -6.49 Total: 11.48 kcal Atomic # 6 Polarization: 15.32 SS G_CDS: 0.27 Total: 15.59 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: 0.49 Total: -64.28 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: 0.23 Total: -27.49 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.71 Total: 14.46 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -40.04 -4.35 -44.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270957019.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.588 kcal (2) G-P(sol) polarization free energy of solvation -40.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds