Wall clock time and date at job start Tue Mar 31 2020 22:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30276 * 126.28250 * 2 1 4 4 N 1.28674 * 109.37873 * 179.97438 * 3 2 1 5 5 C 1.30272 * 109.38187 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.28028 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.47385 * 90.02472 * 6 5 4 8 8 O 1.21288 * 119.99699 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00263 * 180.02562 * 7 6 5 10 10 C 1.46495 * 119.99814 * 359.97438 * 9 7 6 11 11 C 1.46502 * 119.99726 * 179.97438 * 9 7 6 12 12 H 1.08995 * 109.47848 * 359.97438 * 11 9 7 13 13 C 1.53000 * 109.47114 * 239.99419 * 11 9 7 14 14 C 1.53008 * 109.46701 * 120.00017 * 11 9 7 15 15 N 1.46894 * 109.47331 * 304.99780 * 14 11 9 16 16 C 1.46897 * 111.00255 * 179.97438 * 15 14 11 17 17 C 1.50695 * 109.47426 * 179.97438 * 16 15 14 18 18 O 1.21296 * 119.99991 * 0.02562 * 17 16 15 19 19 N 1.34772 * 120.00418 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00536 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99637 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00221 * 180.02562 * 20 19 17 23 23 N 1.31409 * 119.99685 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00053 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46989 * 90.00073 * 24 22 20 26 26 H 1.48493 * 109.47201 * 210.00168 * 24 22 20 27 27 H 1.48498 * 109.47239 * 330.00346 * 24 22 20 28 28 O 1.34364 * 107.43764 * 359.97438 * 5 4 3 29 29 H 1.08997 * 109.47444 * 90.01974 * 1 2 3 30 30 H 1.09002 * 109.46698 * 210.02579 * 1 2 3 31 31 H 1.09002 * 109.47090 * 330.01523 * 1 2 3 32 32 H 1.08995 * 109.47102 * 210.02300 * 6 5 4 33 33 H 1.09003 * 109.47108 * 330.02056 * 6 5 4 34 34 H 1.08995 * 109.47587 * 90.00126 * 10 9 7 35 35 H 1.09000 * 109.46834 * 210.00098 * 10 9 7 36 36 H 1.09005 * 109.47270 * 329.99652 * 10 9 7 37 37 H 1.08998 * 109.47249 * 180.02562 * 13 11 9 38 38 H 1.09003 * 109.47456 * 300.00705 * 13 11 9 39 39 H 1.09006 * 109.46818 * 60.00579 * 13 11 9 40 40 H 1.09008 * 109.46610 * 65.00131 * 14 11 9 41 41 H 1.08998 * 109.46623 * 184.99562 * 14 11 9 42 42 H 1.00907 * 110.99748 * 56.04269 * 15 14 11 43 43 H 1.09002 * 109.47349 * 300.00351 * 16 15 14 44 44 H 1.09007 * 109.46950 * 59.99850 * 16 15 14 45 45 H 0.97000 * 119.99868 * 0.02562 * 19 17 16 46 46 H 0.97002 * 119.99480 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5091 0.6760 0.0005 5 6 3.5654 -0.6255 0.0004 6 6 4.8176 -1.4639 0.0014 7 6 5.2334 -1.7441 1.4225 8 8 4.5777 -1.3057 2.3438 9 7 6.3345 -2.4810 1.6696 10 6 7.1268 -3.0100 0.5568 11 6 6.7389 -2.7529 3.0512 12 1 6.0339 -2.2814 3.7358 13 6 8.1399 -2.1874 3.2932 14 6 6.7505 -4.2640 3.2911 15 7 5.4381 -4.8251 2.9438 16 6 5.4121 -6.2776 3.1615 17 6 4.0530 -6.8162 2.7959 18 8 3.1909 -6.0640 2.3931 19 7 3.7954 -8.1335 2.9164 20 6 2.5591 -8.6236 2.5833 21 1 1.7915 -7.9538 2.2247 22 6 2.2934 -9.9817 2.7081 23 7 1.1082 -10.4513 2.3893 24 14 3.6208 -11.1400 3.3292 25 1 3.5373 -11.2409 4.8084 26 1 3.4251 -12.4842 2.7294 27 1 4.9555 -10.6155 2.9435 28 8 2.3021 -1.0832 0.0002 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3633 0.8901 0.5136 32 1 4.6250 -2.4052 -0.5131 33 1 5.6153 -0.9262 -0.5113 34 1 7.8948 -2.2871 0.2816 35 1 7.5993 -3.9446 0.8592 36 1 6.4760 -3.1920 -0.2985 37 1 8.4410 -2.3901 4.3210 38 1 8.8452 -2.6586 2.6087 39 1 8.1316 -1.1109 3.1223 40 1 7.5186 -4.7246 2.6698 41 1 6.9646 -4.4635 4.3411 42 1 5.1878 -4.5976 1.9931 43 1 6.1709 -6.7519 2.5390 44 1 5.6172 -6.4915 4.2105 45 1 4.4847 -8.7350 3.2389 46 1 0.9226 -11.3993 2.4768 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270957019.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:26 Heat of formation + Delta-G solvation = -54.315900 kcal Electronic energy + Delta-G solvation = -29651.425823 eV Core-core repulsion = 25384.453475 eV Total energy + Delta-G solvation = -4266.972349 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.33952 -41.26543 -40.27999 -38.14053 -37.30396 -36.19621 -35.59015 -34.73921 -33.76290 -33.08002 -31.40525 -29.11429 -28.34067 -27.78525 -26.61001 -24.69626 -24.25609 -23.64185 -22.38882 -21.31058 -20.39040 -20.02701 -18.96944 -18.30465 -18.09191 -17.86089 -17.26251 -17.05921 -16.70731 -16.60654 -15.89837 -15.75007 -15.58011 -15.46623 -14.99752 -14.75294 -14.46411 -14.27597 -14.10939 -14.05369 -14.01413 -13.64563 -13.54878 -13.47206 -13.24398 -13.20325 -13.08271 -13.01735 -12.97149 -12.78580 -12.44334 -12.41387 -12.10906 -11.97986 -11.88003 -11.52658 -11.16673 -10.52993 -10.47662 -10.26060 -9.74745 -9.26383 -8.42117 -6.03465 0.01332 1.13463 1.24304 1.29392 1.35957 1.44649 1.47207 1.94472 1.96689 2.22768 2.71017 2.73644 3.14194 3.28551 3.33810 3.46129 3.76305 3.94025 4.02167 4.12903 4.18711 4.23973 4.29076 4.31843 4.33912 4.41732 4.48615 4.50962 4.55262 4.65497 4.70125 4.71656 4.77649 4.83041 4.98720 4.99525 5.12942 5.29312 5.51468 5.56343 5.89571 6.05533 6.24180 6.37245 6.59028 6.87193 7.03567 7.13699 7.38604 7.95996 8.75682 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009956 B = 0.002973 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.785571 B = 9415.159009 C =11737.474015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.168 3.832 3 N -0.324 5.324 4 N -0.304 5.304 5 C 0.177 3.823 6 C -0.042 4.042 7 C 0.515 3.485 8 O -0.582 6.582 9 N -0.600 5.600 10 C 0.055 3.945 11 C 0.136 3.864 12 H 0.068 0.932 13 C -0.146 4.146 14 C 0.054 3.946 15 N -0.693 5.693 16 C 0.064 3.936 17 C 0.445 3.555 18 O -0.617 6.617 19 N -0.589 5.589 20 C -0.330 4.330 21 H 0.052 0.948 22 C -0.016 4.016 23 N -0.935 5.935 24 Si 0.967 3.033 25 H -0.259 1.259 26 H -0.275 1.275 27 H -0.227 1.227 28 O -0.235 6.235 29 H 0.127 0.873 30 H 0.101 0.899 31 H 0.122 0.878 32 H 0.156 0.844 33 H 0.178 0.822 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.053 0.947 40 H 0.065 0.935 41 H 0.094 0.906 42 H 0.340 0.660 43 H 0.084 0.916 44 H 0.113 0.887 45 H 0.390 0.610 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.690 13.655 -5.308 23.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.043 4.043 3 N -0.171 5.171 4 N -0.150 5.150 5 C -0.035 4.035 6 C -0.082 4.082 7 C 0.303 3.697 8 O -0.462 6.462 9 N -0.333 5.333 10 C -0.086 4.086 11 C 0.032 3.968 12 H 0.086 0.914 13 C -0.205 4.205 14 C -0.075 4.075 15 N -0.326 5.326 16 C -0.069 4.069 17 C 0.233 3.767 18 O -0.502 6.502 19 N -0.231 5.231 20 C -0.459 4.459 21 H 0.070 0.930 22 C -0.214 4.214 23 N -0.575 5.575 24 Si 0.787 3.213 25 H -0.184 1.184 26 H -0.200 1.200 27 H -0.150 1.150 28 O -0.114 6.114 29 H 0.145 0.855 30 H 0.120 0.880 31 H 0.140 0.860 32 H 0.173 0.827 33 H 0.196 0.804 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.113 0.887 42 H 0.159 0.841 43 H 0.102 0.898 44 H 0.131 0.869 45 H 0.226 0.774 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 17.746 15.602 -4.512 24.056 hybrid contribution -0.224 -2.277 -0.287 2.306 sum 17.522 13.325 -4.799 22.530 Atomic orbital electron populations 1.20724 0.76839 1.06953 1.07220 1.29031 0.99526 0.78707 0.96999 1.74268 0.96288 1.26642 1.19900 1.74205 1.12950 1.09872 1.17965 1.27588 0.85687 0.91284 0.98929 1.20451 0.89458 1.01818 0.96497 1.20463 0.80659 0.78156 0.90468 1.90759 1.54479 1.53142 1.47802 1.47858 1.25751 1.51263 1.08399 1.22288 0.96872 1.01044 0.88373 1.21186 0.98008 0.95114 0.82462 0.91405 1.22006 0.93730 1.00957 1.03783 1.22442 0.88852 0.93379 1.02863 1.59940 1.30493 1.10260 1.31921 1.21639 0.92155 0.89127 1.03933 1.21080 0.91508 0.81844 0.82239 1.90563 1.50149 1.58094 1.51354 1.42012 1.12666 1.07694 1.60727 1.18991 0.90161 0.93435 1.43358 0.93000 1.26150 0.99841 0.98425 0.96997 1.69812 1.23553 1.15647 1.48526 0.85336 0.78945 0.77719 0.79314 1.18387 1.19987 1.15044 1.84838 1.18036 1.39069 1.69493 0.85508 0.88036 0.85973 0.82691 0.80426 0.89192 0.89408 0.89199 0.90060 0.89738 0.92777 0.91712 0.88737 0.84084 0.89836 0.86889 0.77384 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.96 10.51 71.24 0.75 -0.21 16 2 C 0.17 4.68 8.48 88.34 0.75 5.43 16 3 N -0.32 -10.44 12.22 -165.50 -2.02 -12.47 16 4 N -0.30 -9.93 12.22 -165.50 -2.02 -11.95 16 5 C 0.18 5.17 6.97 88.34 0.62 5.79 16 6 C -0.04 -0.80 4.88 29.10 0.14 -0.66 16 7 C 0.52 13.37 7.67 87.66 0.67 14.04 16 8 O -0.58 -22.29 15.36 -3.05 -0.05 -22.33 16 9 N -0.60 -10.86 1.83 -822.59 -1.51 -12.37 16 10 C 0.06 0.43 9.28 127.77 1.19 1.62 16 11 C 0.14 2.61 2.95 44.99 0.13 2.75 16 12 H 0.07 1.93 6.90 -2.39 -0.02 1.91 16 13 C -0.15 -1.70 9.19 71.98 0.66 -1.04 16 14 C 0.05 0.98 4.98 86.31 0.43 1.41 16 15 N -0.69 -20.18 6.12 -517.93 -3.17 -23.35 16 16 C 0.06 1.85 6.17 85.56 0.53 2.38 16 17 C 0.45 20.03 7.82 87.66 0.69 20.72 16 18 O -0.62 -34.90 15.78 -3.08 -0.05 -34.95 16 19 N -0.59 -27.47 5.09 -306.99 -1.56 -29.03 16 20 C -0.33 -19.35 10.16 84.04 0.85 -18.49 16 21 H 0.05 3.65 7.39 -2.91 -0.02 3.63 16 22 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 23 N -0.93 -56.23 13.96 21.66 0.30 -55.93 16 24 Si 0.97 38.04 27.74 68.60 1.90 39.94 16 25 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 26 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 27 H -0.23 -7.32 6.52 99.48 0.65 -6.67 16 28 O -0.23 -7.41 10.87 -3.71 -0.04 -7.45 16 29 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.16 2.10 7.40 -2.39 -0.02 2.08 16 33 H 0.18 1.82 8.11 -2.39 -0.02 1.80 16 34 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.09 0.53 6.53 -2.39 -0.02 0.52 16 36 H 0.09 0.47 6.44 -2.38 -0.02 0.46 16 37 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.08 0.58 7.67 -2.39 -0.02 0.56 16 39 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 40 H 0.06 0.78 6.88 -2.38 -0.02 0.76 16 41 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.34 10.68 7.56 -89.69 -0.68 10.00 16 43 H 0.08 1.81 8.14 -2.39 -0.02 1.80 16 44 H 0.11 2.79 8.14 -2.38 -0.02 2.77 16 45 H 0.39 14.80 5.76 -92.71 -0.53 14.27 16 46 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -98.94 388.71 -0.58 -99.52 By element: Atomic # 1 Polarization: 37.27 SS G_CDS: -0.24 Total: 37.04 kcal Atomic # 6 Polarization: 25.46 SS G_CDS: 7.87 Total: 33.33 kcal Atomic # 7 Polarization: -135.11 SS G_CDS: -9.98 Total: -145.10 kcal Atomic # 8 Polarization: -64.60 SS G_CDS: -0.14 Total: -64.73 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 1.90 Total: 39.94 kcal Total: -98.94 -0.58 -99.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270957019.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.201 kcal (2) G-P(sol) polarization free energy of solvation -98.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds