Wall clock time and date at job start Tue Mar 31 2020 22:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30276 * 126.28250 * 2 1 4 4 N 1.28674 * 109.37873 * 179.97438 * 3 2 1 5 5 C 1.30272 * 109.38187 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.28028 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47433 * 89.97372 * 6 5 4 8 8 O 1.21290 * 119.99589 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00366 * 179.97438 * 7 6 5 10 10 C 1.46503 * 120.00073 * 359.97438 * 9 7 6 11 11 C 1.46504 * 119.99944 * 179.97438 * 9 7 6 12 12 H 1.08994 * 109.47104 * 0.02562 * 11 9 7 13 13 C 1.53000 * 109.46707 * 120.00367 * 11 9 7 14 14 C 1.52995 * 109.47017 * 239.99726 * 11 9 7 15 15 N 1.46902 * 109.47056 * 55.00314 * 14 11 9 16 16 C 1.46903 * 111.00035 * 179.97438 * 15 14 11 17 17 C 1.50699 * 109.46949 * 179.97438 * 16 15 14 18 18 O 1.21288 * 120.00399 * 0.02562 * 17 16 15 19 19 N 1.34779 * 119.99642 * 180.02562 * 17 16 15 20 20 C 1.37100 * 119.99611 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00198 * 0.02562 * 20 19 17 22 22 C 1.38952 * 119.99686 * 179.97438 * 20 19 17 23 23 N 1.31406 * 120.00102 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99694 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46819 * 60.00555 * 24 22 20 26 26 H 1.48503 * 109.46953 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47172 * 300.00461 * 24 22 20 28 28 O 1.34364 * 107.43764 * 359.97438 * 5 4 3 29 29 H 1.08997 * 109.47444 * 90.01974 * 1 2 3 30 30 H 1.09002 * 109.46698 * 210.02579 * 1 2 3 31 31 H 1.09002 * 109.47090 * 330.01523 * 1 2 3 32 32 H 1.09006 * 109.47243 * 209.97514 * 6 5 4 33 33 H 1.09004 * 109.47210 * 329.97528 * 6 5 4 34 34 H 1.09005 * 109.46990 * 89.99671 * 10 9 7 35 35 H 1.08997 * 109.47466 * 209.99907 * 10 9 7 36 36 H 1.09001 * 109.46581 * 330.00240 * 10 9 7 37 37 H 1.09000 * 109.47446 * 299.99824 * 13 11 9 38 38 H 1.08996 * 109.47795 * 59.99982 * 13 11 9 39 39 H 1.09000 * 109.46929 * 179.97438 * 13 11 9 40 40 H 1.09000 * 109.47359 * 175.00257 * 14 11 9 41 41 H 1.09003 * 109.47922 * 295.00436 * 14 11 9 42 42 H 1.00897 * 110.99757 * 303.94948 * 15 14 11 43 43 H 1.09000 * 109.47375 * 300.00294 * 16 15 14 44 44 H 1.09006 * 109.46953 * 60.00624 * 16 15 14 45 45 H 0.96995 * 120.00583 * 0.02562 * 19 17 16 46 46 H 0.97004 * 120.00154 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5091 0.6760 0.0005 5 6 3.5654 -0.6255 0.0004 6 6 4.8176 -1.4639 0.0014 7 6 5.2342 -1.7431 1.4225 8 8 4.5783 -1.3048 2.3438 9 7 6.3347 -2.4806 1.6696 10 6 7.1260 -3.0114 0.5568 11 6 6.7399 -2.7515 3.0512 12 1 6.0352 -2.2795 3.7357 13 6 6.7504 -4.2623 3.2926 14 6 8.1414 -2.1869 3.2917 15 7 8.1604 -0.7596 2.9450 16 6 9.4933 -0.1822 3.1644 17 6 9.4740 1.2795 2.7981 18 8 8.4506 1.7902 2.3945 19 7 10.5941 2.0192 2.9190 20 6 10.5765 3.3491 2.5863 21 1 9.6650 3.8040 2.2277 22 6 11.7311 4.1120 2.7115 23 7 12.8400 3.5586 3.1483 24 14 11.7069 5.9242 2.2588 25 1 10.7150 6.6329 3.1068 26 1 13.0545 6.5076 2.4797 27 1 11.3320 6.0724 0.8296 28 8 2.3021 -1.0832 0.0002 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3633 0.8901 0.5136 32 1 4.6248 -2.4057 -0.5124 33 1 5.6151 -0.9265 -0.5120 34 1 7.8943 -2.2893 0.2804 35 1 7.5979 -3.9461 0.8597 36 1 6.4743 -3.1936 -0.2978 37 1 5.7520 -4.6647 3.1212 38 1 7.4549 -4.7348 2.6081 39 1 7.0523 -4.4640 4.3204 40 1 8.4072 -2.3093 4.3417 41 1 8.8601 -2.7213 2.6704 42 1 7.8551 -0.6144 1.9943 43 1 9.7680 -0.2907 4.2136 44 1 10.2215 -0.7027 2.5423 45 1 11.4127 1.6108 3.2414 46 1 13.6462 4.0910 3.2353 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270957020.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:30 Heat of formation + Delta-G solvation = -21.617631 kcal Electronic energy + Delta-G solvation = -29520.959701 eV Core-core repulsion = 25255.405256 eV Total energy + Delta-G solvation = -4265.554445 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.29595 -40.32899 -38.24930 -37.02789 -36.22690 -34.70461 -33.90224 -33.66287 -32.21479 -31.15239 -30.64335 -27.60668 -27.47005 -27.15517 -24.98199 -23.56120 -23.09673 -22.65706 -21.46098 -19.41800 -19.07033 -18.03154 -17.83590 -17.31107 -17.06110 -16.55983 -16.11590 -15.83468 -15.36636 -15.08695 -14.71458 -14.47537 -14.39255 -13.95180 -13.79916 -13.70415 -13.48735 -13.44956 -13.17756 -13.05856 -12.72875 -12.62849 -12.49359 -12.42046 -12.38809 -11.87109 -11.85839 -11.66065 -11.56657 -11.39184 -11.05964 -10.98664 -10.93289 -10.39062 -10.15679 -10.13865 -9.53550 -9.44284 -8.94120 -8.38358 -8.00679 -7.90152 -6.36495 -3.76862 1.00414 2.01543 2.30702 2.41376 2.78162 3.25386 3.29963 3.35709 3.60281 3.96347 4.05399 4.17782 4.19614 4.34750 4.49420 4.71760 4.77779 4.81924 4.94157 4.94960 5.03678 5.06337 5.15332 5.18347 5.23042 5.29633 5.32717 5.33607 5.38159 5.43640 5.50802 5.59181 5.60034 5.78902 5.81850 5.98210 6.01151 6.30140 6.33822 7.07699 7.23459 7.60849 7.67882 7.93982 8.12165 8.25433 8.67363 9.23862 9.59851 10.12134 10.81298 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009817 B = 0.002825 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.378330 B = 9909.424101 C =12266.528068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.158 3.842 3 N -0.284 5.284 4 N -0.261 5.261 5 C 0.180 3.820 6 C -0.044 4.044 7 C 0.524 3.476 8 O -0.516 6.516 9 N -0.608 5.608 10 C 0.067 3.933 11 C 0.138 3.862 12 H 0.111 0.889 13 C -0.159 4.159 14 C 0.050 3.950 15 N -0.664 5.664 16 C 0.051 3.949 17 C 0.439 3.561 18 O -0.577 6.577 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.904 5.904 24 Si 0.930 3.070 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.274 1.274 28 O -0.225 6.225 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.125 0.875 33 H 0.143 0.857 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.029 0.971 42 H 0.347 0.653 43 H 0.086 0.914 44 H 0.041 0.959 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.417 -21.058 -6.986 27.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.052 4.052 3 N -0.132 5.132 4 N -0.107 5.107 5 C -0.031 4.031 6 C -0.086 4.086 7 C 0.310 3.690 8 O -0.390 6.390 9 N -0.343 5.343 10 C -0.076 4.076 11 C 0.035 3.965 12 H 0.129 0.871 13 C -0.217 4.217 14 C -0.080 4.080 15 N -0.297 5.297 16 C -0.081 4.081 17 C 0.224 3.776 18 O -0.460 6.460 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.546 5.546 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 O -0.104 6.104 29 H 0.116 0.884 30 H 0.110 0.890 31 H 0.125 0.875 32 H 0.143 0.857 33 H 0.161 0.839 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.047 0.953 42 H 0.167 0.833 43 H 0.104 0.896 44 H 0.059 0.941 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.143 -18.930 -6.120 25.620 hybrid contribution 1.009 -0.959 -0.750 1.581 sum -15.134 -19.890 -6.870 25.920 Atomic orbital electron populations 1.20333 0.80225 1.05755 1.05039 1.27989 0.97772 0.79676 0.99780 1.74448 0.96041 1.25554 1.17152 1.74487 1.12007 1.08794 1.15398 1.26844 0.84513 0.91381 1.00402 1.20150 0.90399 1.00196 0.97805 1.19931 0.80853 0.78188 0.90028 1.90787 1.52939 1.49465 1.45807 1.47743 1.26465 1.52655 1.07390 1.21916 0.96449 1.00084 0.89149 1.21221 0.97257 0.95297 0.82729 0.87095 1.22105 1.02326 0.94768 1.02527 1.22332 0.95029 0.89096 1.01577 1.59973 1.25537 1.12112 1.32074 1.21679 0.89748 0.94992 1.01708 1.19826 0.84881 0.87705 0.85157 1.90567 1.31829 1.72934 1.50697 1.41849 1.10355 1.09834 1.58164 1.19671 0.97865 0.84500 1.40679 0.87970 1.25245 0.94837 1.00509 0.97358 1.69604 1.00928 1.37359 1.46676 0.85926 0.77119 0.82007 0.79238 1.19850 1.21023 1.19900 1.84712 1.17416 1.38417 1.69877 0.88405 0.88982 0.87480 0.85659 0.83887 0.91999 0.90323 0.90787 0.92079 0.92223 0.90979 0.89868 0.95289 0.83255 0.89596 0.94091 0.77539 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.34 10.51 36.00 0.38 0.03 16 2 C 0.16 1.95 8.48 -12.94 -0.11 1.84 16 3 N -0.28 -4.64 12.22 32.55 0.40 -4.24 16 4 N -0.26 -4.60 12.22 32.55 0.40 -4.20 16 5 C 0.18 2.54 6.97 -12.94 -0.09 2.45 16 6 C -0.04 -0.44 4.88 -29.04 -0.14 -0.59 16 7 C 0.52 6.88 7.67 -10.99 -0.08 6.79 16 8 O -0.52 -9.36 15.36 5.55 0.09 -9.28 16 9 N -0.61 -6.24 1.83 -173.93 -0.32 -6.55 16 10 C 0.07 0.42 9.38 59.85 0.56 0.98 16 11 C 0.14 1.50 2.95 -67.93 -0.20 1.30 16 12 H 0.11 1.56 6.90 -51.93 -0.36 1.20 16 13 C -0.16 -1.17 9.17 37.16 0.34 -0.83 16 14 C 0.05 0.60 5.03 -3.83 -0.02 0.58 16 15 N -0.66 -11.27 6.12 -115.05 -0.70 -11.97 16 16 C 0.05 0.93 6.17 -4.97 -0.03 0.90 16 17 C 0.44 10.81 7.82 -10.98 -0.09 10.72 16 18 O -0.58 -16.59 15.78 5.55 0.09 -16.51 16 19 N -0.56 -14.76 5.29 -10.96 -0.06 -14.82 16 20 C -0.30 -8.58 9.68 -14.93 -0.14 -8.72 16 21 H 0.10 3.11 7.16 -52.49 -0.38 2.74 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -25.07 13.05 55.50 0.72 -24.35 16 24 Si 0.93 21.75 29.55 -169.99 -5.02 16.72 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 28 O -0.22 -2.89 10.87 5.37 0.06 -2.83 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.13 0.67 7.40 -51.93 -0.38 0.29 16 33 H 0.14 1.23 8.11 -51.93 -0.42 0.81 16 34 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 35 H 0.08 0.37 6.43 -51.93 -0.33 0.04 16 36 H 0.07 0.27 6.44 -51.93 -0.33 -0.07 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.35 6.66 -51.93 -0.35 0.01 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.03 0.29 7.84 -51.93 -0.41 -0.11 16 42 H 0.35 6.18 7.55 -39.29 -0.30 5.88 16 43 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 46 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 391.79 15.07 5.90 5.90 Total: -1.00 -40.56 391.79 -4.69 -45.25 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -6.52 Total: 10.92 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: 0.28 Total: 15.96 kcal Atomic # 7 Polarization: -66.57 SS G_CDS: 0.44 Total: -66.14 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: 0.23 Total: -28.62 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -40.56 -4.69 -45.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270957020.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.632 kcal (2) G-P(sol) polarization free energy of solvation -40.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds