Wall clock time and date at job start Tue Mar 31 2020 22:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30276 * 126.28250 * 2 1 4 4 N 1.28674 * 109.37873 * 179.97438 * 3 2 1 5 5 C 1.30272 * 109.38187 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.28028 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47433 * 89.97372 * 6 5 4 8 8 O 1.21290 * 119.99589 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00366 * 179.97438 * 7 6 5 10 10 C 1.46503 * 120.00073 * 359.97438 * 9 7 6 11 11 C 1.46504 * 119.99944 * 179.97438 * 9 7 6 12 12 H 1.08994 * 109.47104 * 0.02562 * 11 9 7 13 13 C 1.53000 * 109.46707 * 120.00367 * 11 9 7 14 14 C 1.52995 * 109.47017 * 239.99726 * 11 9 7 15 15 N 1.46902 * 109.47056 * 55.00314 * 14 11 9 16 16 C 1.46903 * 111.00035 * 179.97438 * 15 14 11 17 17 C 1.50699 * 109.46949 * 179.97438 * 16 15 14 18 18 O 1.21288 * 120.00399 * 0.02562 * 17 16 15 19 19 N 1.34779 * 119.99642 * 180.02562 * 17 16 15 20 20 C 1.37100 * 119.99611 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00198 * 0.02562 * 20 19 17 22 22 C 1.38952 * 119.99686 * 179.97438 * 20 19 17 23 23 N 1.31406 * 120.00102 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99694 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46819 * 60.00555 * 24 22 20 26 26 H 1.48503 * 109.46953 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47172 * 300.00461 * 24 22 20 28 28 O 1.34364 * 107.43764 * 359.97438 * 5 4 3 29 29 H 1.08997 * 109.47444 * 90.01974 * 1 2 3 30 30 H 1.09002 * 109.46698 * 210.02579 * 1 2 3 31 31 H 1.09002 * 109.47090 * 330.01523 * 1 2 3 32 32 H 1.09006 * 109.47243 * 209.97514 * 6 5 4 33 33 H 1.09004 * 109.47210 * 329.97528 * 6 5 4 34 34 H 1.09005 * 109.46990 * 89.99671 * 10 9 7 35 35 H 1.08997 * 109.47466 * 209.99907 * 10 9 7 36 36 H 1.09001 * 109.46581 * 330.00240 * 10 9 7 37 37 H 1.09000 * 109.47446 * 299.99824 * 13 11 9 38 38 H 1.08996 * 109.47795 * 59.99982 * 13 11 9 39 39 H 1.09000 * 109.46929 * 179.97438 * 13 11 9 40 40 H 1.09000 * 109.47359 * 175.00257 * 14 11 9 41 41 H 1.09003 * 109.47922 * 295.00436 * 14 11 9 42 42 H 1.00897 * 110.99757 * 303.94948 * 15 14 11 43 43 H 1.09000 * 109.47375 * 300.00294 * 16 15 14 44 44 H 1.09006 * 109.46953 * 60.00624 * 16 15 14 45 45 H 0.96995 * 120.00583 * 0.02562 * 19 17 16 46 46 H 0.97004 * 120.00154 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5091 0.6760 0.0005 5 6 3.5654 -0.6255 0.0004 6 6 4.8176 -1.4639 0.0014 7 6 5.2342 -1.7431 1.4225 8 8 4.5783 -1.3048 2.3438 9 7 6.3347 -2.4806 1.6696 10 6 7.1260 -3.0114 0.5568 11 6 6.7399 -2.7515 3.0512 12 1 6.0352 -2.2795 3.7357 13 6 6.7504 -4.2623 3.2926 14 6 8.1414 -2.1869 3.2917 15 7 8.1604 -0.7596 2.9450 16 6 9.4933 -0.1822 3.1644 17 6 9.4740 1.2795 2.7981 18 8 8.4506 1.7902 2.3945 19 7 10.5941 2.0192 2.9190 20 6 10.5765 3.3491 2.5863 21 1 9.6650 3.8040 2.2277 22 6 11.7311 4.1120 2.7115 23 7 12.8400 3.5586 3.1483 24 14 11.7069 5.9242 2.2588 25 1 10.7150 6.6329 3.1068 26 1 13.0545 6.5076 2.4797 27 1 11.3320 6.0724 0.8296 28 8 2.3021 -1.0832 0.0002 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3633 0.8901 0.5136 32 1 4.6248 -2.4057 -0.5124 33 1 5.6151 -0.9265 -0.5120 34 1 7.8943 -2.2893 0.2804 35 1 7.5979 -3.9461 0.8597 36 1 6.4743 -3.1936 -0.2978 37 1 5.7520 -4.6647 3.1212 38 1 7.4549 -4.7348 2.6081 39 1 7.0523 -4.4640 4.3204 40 1 8.4072 -2.3093 4.3417 41 1 8.8601 -2.7213 2.6704 42 1 7.8551 -0.6144 1.9943 43 1 9.7680 -0.2907 4.2136 44 1 10.2215 -0.7027 2.5423 45 1 11.4127 1.6108 3.2414 46 1 13.6462 4.0910 3.2353 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270957020.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:30 Heat of formation + Delta-G solvation = -58.849759 kcal Electronic energy + Delta-G solvation = -29522.574207 eV Core-core repulsion = 25255.405256 eV Total energy + Delta-G solvation = -4267.168952 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.32051 -41.26335 -40.14400 -38.12447 -37.28491 -36.17802 -35.56953 -34.72879 -33.32619 -33.03209 -31.38444 -28.98735 -28.33994 -27.81520 -26.68128 -24.77446 -24.29894 -23.60033 -22.38665 -21.12934 -20.15697 -19.89692 -18.96699 -18.29251 -18.07690 -17.93160 -17.22597 -17.02843 -16.63837 -16.43552 -16.03654 -15.90632 -15.62144 -15.37803 -15.12979 -14.73806 -14.38082 -14.18946 -14.10535 -13.98734 -13.61049 -13.53853 -13.51515 -13.44056 -13.27281 -13.13683 -13.02301 -12.97131 -12.93230 -12.77506 -12.49553 -12.43095 -12.13226 -12.00755 -11.85347 -11.53101 -11.17110 -10.54735 -10.39122 -10.03448 -9.74629 -9.28285 -8.48595 -5.97195 0.03840 1.11919 1.27080 1.37647 1.39348 1.46921 1.50444 1.97036 2.03518 2.27827 2.76084 2.90226 3.18327 3.35488 3.39231 3.50923 3.75426 3.93019 4.02003 4.18851 4.22878 4.28015 4.33157 4.34029 4.36592 4.46675 4.50051 4.54955 4.55215 4.68937 4.69440 4.70547 4.71267 4.83568 4.98010 5.02056 5.11518 5.30901 5.38824 5.55106 5.87993 6.10585 6.24526 6.38285 6.58985 7.03268 7.11261 7.20403 7.54216 8.11256 8.68521 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009817 B = 0.002825 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.378330 B = 9909.424101 C =12266.528068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.171 3.829 3 N -0.337 5.337 4 N -0.320 5.320 5 C 0.182 3.818 6 C -0.041 4.041 7 C 0.515 3.485 8 O -0.582 6.582 9 N -0.600 5.600 10 C 0.056 3.944 11 C 0.137 3.863 12 H 0.069 0.931 13 C -0.146 4.146 14 C 0.053 3.947 15 N -0.690 5.690 16 C 0.068 3.932 17 C 0.433 3.567 18 O -0.626 6.626 19 N -0.571 5.571 20 C -0.336 4.336 21 H 0.073 0.927 22 C -0.010 4.010 23 N -0.918 5.918 24 Si 0.990 3.010 25 H -0.276 1.276 26 H -0.266 1.266 27 H -0.272 1.272 28 O -0.225 6.225 29 H 0.127 0.873 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.179 0.821 33 H 0.156 0.844 34 H 0.056 0.944 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.061 0.939 42 H 0.340 0.660 43 H 0.103 0.897 44 H 0.073 0.927 45 H 0.397 0.603 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.725 -23.765 -7.962 29.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.040 4.040 3 N -0.183 5.183 4 N -0.165 5.165 5 C -0.031 4.031 6 C -0.081 4.081 7 C 0.303 3.697 8 O -0.461 6.461 9 N -0.332 5.332 10 C -0.085 4.085 11 C 0.033 3.967 12 H 0.087 0.913 13 C -0.204 4.204 14 C -0.077 4.077 15 N -0.323 5.323 16 C -0.064 4.064 17 C 0.221 3.779 18 O -0.512 6.512 19 N -0.209 5.209 20 C -0.465 4.465 21 H 0.091 0.909 22 C -0.210 4.210 23 N -0.559 5.559 24 Si 0.814 3.186 25 H -0.201 1.201 26 H -0.190 1.190 27 H -0.197 1.197 28 O -0.105 6.105 29 H 0.145 0.855 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.196 0.804 33 H 0.174 0.826 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.109 0.891 41 H 0.079 0.921 42 H 0.159 0.841 43 H 0.121 0.879 44 H 0.091 0.909 45 H 0.232 0.768 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.384 -21.682 -7.102 27.517 hybrid contribution 0.760 -0.189 -0.424 0.891 sum -14.624 -21.870 -7.527 27.365 Atomic orbital electron populations 1.20747 0.76008 1.07207 1.07310 1.29172 0.99578 0.78704 0.96559 1.74323 0.96298 1.27605 1.20102 1.74362 1.13258 1.11023 1.17897 1.27518 0.85885 0.91008 0.98729 1.20437 0.89029 1.02199 0.96407 1.20478 0.81064 0.77656 0.90533 1.90757 1.55289 1.52262 1.47816 1.47854 1.25667 1.51395 1.08329 1.22283 0.96694 1.00678 0.88852 1.21181 0.95534 0.97426 0.82553 0.91294 1.22016 1.03062 0.91586 1.03786 1.22451 0.96311 0.86300 1.02591 1.59949 1.24947 1.15637 1.31794 1.21526 0.91456 0.90314 1.03118 1.21014 0.83479 0.90236 0.83218 1.90538 1.33472 1.74718 1.52495 1.41898 1.11150 1.09312 1.58518 1.19586 0.97594 0.86284 1.43073 0.90869 1.25992 0.94106 1.04331 0.96567 1.69651 1.01239 1.38809 1.46154 0.85038 0.77790 0.76992 0.78806 1.20121 1.18997 1.19670 1.84736 1.17193 1.38483 1.70038 0.85464 0.86616 0.86784 0.80375 0.82636 0.92536 0.87868 0.87594 0.92203 0.89679 0.90117 0.89100 0.92142 0.84144 0.87851 0.90886 0.76843 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.60 10.51 71.24 0.75 0.15 16 2 C 0.17 4.26 8.48 88.34 0.75 5.00 16 3 N -0.34 -11.64 12.22 -165.50 -2.02 -13.66 16 4 N -0.32 -12.02 12.22 -165.50 -2.02 -14.05 16 5 C 0.18 5.25 6.97 88.34 0.62 5.87 16 6 C -0.04 -0.77 4.88 29.10 0.14 -0.63 16 7 C 0.52 13.60 7.67 87.66 0.67 14.28 16 8 O -0.58 -22.44 15.36 -3.06 -0.05 -22.48 16 9 N -0.60 -11.47 1.83 -822.59 -1.51 -12.98 16 10 C 0.06 0.51 9.38 127.77 1.20 1.71 16 11 C 0.14 2.82 2.95 44.99 0.13 2.96 16 12 H 0.07 2.04 6.90 -2.39 -0.02 2.02 16 13 C -0.15 -1.74 9.17 71.98 0.66 -1.08 16 14 C 0.05 1.14 5.03 86.30 0.43 1.58 16 15 N -0.69 -23.13 6.12 -517.92 -3.17 -26.30 16 16 C 0.07 2.40 6.17 85.56 0.53 2.92 16 17 C 0.43 21.75 7.82 87.66 0.69 22.44 16 18 O -0.63 -37.61 15.78 -3.05 -0.05 -37.66 16 19 N -0.57 -30.43 5.29 -306.98 -1.62 -32.06 16 20 C -0.34 -19.91 9.68 84.04 0.81 -19.10 16 21 H 0.07 4.69 7.16 -2.91 -0.02 4.67 16 22 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 23 N -0.92 -50.38 13.05 21.66 0.28 -50.10 16 24 Si 0.99 44.61 29.55 68.60 2.03 46.64 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 27 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 28 O -0.22 -5.78 10.87 -3.71 -0.04 -5.82 16 29 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.18 1.32 7.40 -2.38 -0.02 1.30 16 33 H 0.16 2.55 8.11 -2.38 -0.02 2.53 16 34 H 0.06 0.63 8.13 -2.38 -0.02 0.61 16 35 H 0.10 0.46 6.43 -2.39 -0.02 0.45 16 36 H 0.11 0.29 6.44 -2.39 -0.02 0.28 16 37 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.08 0.60 6.66 -2.39 -0.02 0.59 16 39 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.09 1.83 8.14 -2.39 -0.02 1.82 16 41 H 0.06 0.97 7.84 -2.39 -0.02 0.95 16 42 H 0.34 12.15 7.55 -89.70 -0.68 11.47 16 43 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 44 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 45 H 0.40 19.79 7.90 -92.71 -0.73 19.06 16 46 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -96.61 391.79 -0.70 -97.31 By element: Atomic # 1 Polarization: 35.52 SS G_CDS: -0.37 Total: 35.14 kcal Atomic # 6 Polarization: 28.16 SS G_CDS: 7.85 Total: 36.00 kcal Atomic # 7 Polarization: -139.07 SS G_CDS: -10.06 Total: -149.13 kcal Atomic # 8 Polarization: -65.82 SS G_CDS: -0.14 Total: -65.96 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -96.61 -0.70 -97.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270957020.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.458 kcal (2) G-P(sol) polarization free energy of solvation -96.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds