Wall clock time and date at job start Tue Mar 31 2020 22:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29397 * 125.58751 * 2 1 4 4 N 1.40173 * 108.14236 * 180.02562 * 3 2 1 5 5 C 1.46502 * 126.34958 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47089 * 270.02624 * 5 4 3 7 7 O 1.21283 * 120.00081 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00230 * 180.02562 * 6 5 4 9 9 C 1.46504 * 120.00440 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47009 * 179.97438 * 9 8 6 11 11 H 1.08998 * 109.67998 * 59.77027 * 10 9 8 12 12 C 1.53302 * 109.67846 * 180.32453 * 10 9 8 13 13 O 1.42958 * 109.22128 * 172.02709 * 12 10 9 14 14 C 1.42960 * 114.16328 * 297.41711 * 13 12 10 15 15 C 1.53289 * 109.22606 * 62.58363 * 14 13 12 16 16 N 1.47148 * 109.68367 * 299.24985 * 10 9 8 17 17 C 1.36939 * 120.97897 * 9.71878 * 16 10 9 18 18 H 1.08000 * 120.00339 * 329.43330 * 17 16 10 19 19 C 1.38820 * 119.99760 * 149.43100 * 17 16 10 20 20 N 1.31614 * 120.00288 * 163.37233 * 19 17 16 21 21 Si 1.86805 * 119.99957 * 343.37573 * 19 17 16 22 22 H 1.48503 * 109.47194 * 88.93211 * 21 19 17 23 23 H 1.48494 * 109.46905 * 208.93376 * 21 19 17 24 24 H 1.48505 * 109.46905 * 328.93561 * 21 19 17 25 25 C 1.34936 * 107.29689 * 0.26690 * 4 3 2 26 26 O 1.21820 * 126.29781 * 179.71896 * 25 4 3 27 27 N 1.34809 * 107.39892 * 359.57882 * 25 4 3 28 28 C 1.46500 * 125.83829 * 180.17947 * 27 25 4 29 29 H 1.09003 * 109.46776 * 359.96892 * 1 2 3 30 30 H 1.08995 * 109.47409 * 119.97165 * 1 2 3 31 31 H 1.09002 * 109.47038 * 239.97329 * 1 2 3 32 32 H 1.09000 * 109.46808 * 150.02668 * 5 4 3 33 33 H 1.09003 * 109.46992 * 30.02718 * 5 4 3 34 34 H 0.97008 * 119.99863 * 359.97438 * 8 6 5 35 35 H 1.09004 * 109.46280 * 299.99862 * 9 8 6 36 36 H 1.08995 * 109.46684 * 59.99738 * 9 8 6 37 37 H 1.08999 * 109.51125 * 291.94657 * 12 10 9 38 38 H 1.08999 * 109.51303 * 52.10091 * 12 10 9 39 39 H 1.08999 * 109.51776 * 302.65480 * 14 13 12 40 40 H 1.09008 * 109.55227 * 182.53282 * 14 13 12 41 41 H 1.09000 * 109.68492 * 187.97035 * 15 14 13 42 42 H 1.09007 * 109.68242 * 67.41856 * 15 14 13 43 43 H 0.96994 * 120.00754 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.47293 * 270.29290 * 28 27 25 45 45 H 1.09010 * 109.46917 * 30.28662 * 28 27 25 46 46 H 1.08994 * 109.47336 * 150.28228 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2600 1.0523 0.0000 4 7 3.5972 0.6321 -0.0006 5 6 4.7794 1.4974 -0.0003 6 6 5.1840 1.7956 -1.4210 7 8 4.5473 1.3315 -2.3430 8 7 6.2534 2.5782 -1.6670 9 6 6.6464 2.8686 -3.0481 10 6 7.8811 3.7722 -3.0477 11 1 8.7014 3.2727 -2.5323 12 6 8.2918 4.0858 -4.4910 13 8 9.3249 5.0738 -4.4823 14 6 8.9292 6.3292 -3.9244 15 6 8.5512 6.1306 -2.4522 16 7 7.5675 5.0394 -2.3687 17 6 6.3947 5.1987 -1.6799 18 1 5.5077 4.6686 -1.9940 19 6 6.3459 6.0415 -0.5779 20 7 5.1847 6.4543 -0.1160 21 14 7.9285 6.5898 0.2494 22 1 8.4197 7.8334 -0.3967 23 1 7.6707 6.8482 1.6887 24 1 8.9532 5.5235 0.1136 25 6 3.5938 -0.7173 -0.0069 26 8 4.5737 -1.4409 -0.0142 27 7 2.3063 -1.1171 -0.0007 28 6 1.8394 -2.5057 -0.0006 29 1 -0.3633 1.0277 0.0006 30 1 -0.3634 -0.5134 -0.8902 31 1 -0.3633 -0.5143 0.8898 32 1 5.5985 0.9933 0.5126 33 1 4.5471 2.4296 0.5147 34 1 6.7624 2.9497 -0.9295 35 1 6.8781 1.9364 -3.5635 36 1 5.8274 3.3732 -3.5604 37 1 8.6598 3.1785 -4.9701 38 1 7.4301 4.4647 -5.0406 39 1 8.0699 6.7164 -4.4719 40 1 9.7554 7.0368 -3.9959 41 1 8.1154 7.0487 -2.0579 42 1 9.4395 5.8689 -1.8771 43 1 5.1506 7.0435 0.6537 44 1 1.7230 -2.8500 -1.0282 45 1 2.5676 -3.1338 0.5127 46 1 0.8804 -2.5665 0.5139 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272901541.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:11 Heat of formation + Delta-G solvation = 9.983780 kcal Electronic energy + Delta-G solvation = -30747.972050 eV Core-core repulsion = 26483.787945 eV Total energy + Delta-G solvation = -4264.184105 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.33994 -39.40137 -38.51453 -37.21094 -35.64094 -35.11418 -33.66838 -32.28762 -31.79789 -31.14915 -30.19702 -27.62404 -27.39669 -26.67358 -24.92223 -23.45268 -22.33382 -21.64907 -20.96474 -20.07567 -19.77821 -17.55966 -17.29417 -16.77281 -16.21341 -16.10472 -15.89298 -15.68019 -15.62359 -15.07924 -14.82352 -14.50078 -14.23131 -14.04584 -13.92241 -13.82792 -13.65142 -13.38939 -12.92762 -12.88699 -12.78540 -12.59921 -12.37691 -11.94234 -11.87190 -11.81525 -11.72655 -11.48131 -11.15420 -10.78935 -10.57177 -10.36623 -10.30694 -10.11883 -9.84581 -9.65541 -9.50228 -9.24009 -8.72427 -8.34074 -8.32703 -7.05331 -6.06779 -3.51031 1.79651 2.01339 2.78488 3.02865 3.13013 3.20781 3.38027 3.39103 3.79533 4.28024 4.35604 4.38800 4.55372 4.63220 4.83690 5.02005 5.14837 5.17442 5.17956 5.22272 5.30438 5.41689 5.45424 5.53317 5.53698 5.65143 5.70106 5.77648 5.88009 5.88923 5.89489 6.01278 6.10677 6.19070 6.22910 6.33372 6.49000 6.59926 6.70543 7.04381 7.58098 7.74897 7.77875 8.09026 8.18277 8.22205 8.74640 8.77895 9.55025 9.92398 11.06705 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015817 B = 0.003224 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.816518 B = 8682.093336 C = 9629.877316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.263 3.737 3 N -0.259 5.259 4 N -0.429 5.429 5 C 0.141 3.859 6 C 0.500 3.500 7 O -0.550 6.550 8 N -0.690 5.690 9 C 0.139 3.861 10 C 0.128 3.872 11 H 0.047 0.953 12 C 0.054 3.946 13 O -0.388 6.388 14 C 0.046 3.954 15 C 0.091 3.909 16 N -0.607 5.607 17 C -0.270 4.270 18 H 0.098 0.902 19 C 0.031 3.969 20 N -0.900 5.900 21 Si 0.881 3.119 22 H -0.288 1.288 23 H -0.303 1.303 24 H -0.271 1.271 25 C 0.653 3.347 26 O -0.559 6.559 27 N -0.560 5.560 28 C 0.100 3.900 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.120 0.880 33 H 0.132 0.868 34 H 0.413 0.587 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.034 0.966 43 H 0.264 0.736 44 H 0.071 0.929 45 H 0.086 0.914 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.796 -11.976 0.616 13.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.016 4.016 3 N -0.081 5.081 4 N -0.248 5.248 5 C 0.016 3.984 6 C 0.284 3.716 7 O -0.428 6.428 8 N -0.343 5.343 9 C 0.015 3.985 10 C 0.022 3.978 11 H 0.065 0.935 12 C -0.025 4.025 13 O -0.306 6.306 14 C -0.032 4.032 15 C -0.035 4.035 16 N -0.334 5.334 17 C -0.397 4.397 18 H 0.115 0.885 19 C -0.170 4.170 20 N -0.542 5.542 21 Si 0.711 3.289 22 H -0.215 1.215 23 H -0.231 1.231 24 H -0.196 1.196 25 C 0.352 3.648 26 O -0.433 6.433 27 N -0.289 5.289 28 C -0.042 4.042 29 H 0.119 0.881 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.138 0.862 33 H 0.150 0.850 34 H 0.250 0.750 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.105 0.895 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.362 -11.707 0.031 12.877 hybrid contribution 0.895 0.121 0.959 1.318 sum -4.467 -11.586 0.991 12.457 Atomic orbital electron populations 1.20382 0.83072 1.05916 1.03828 1.24166 0.96441 0.81922 0.99034 1.77093 0.87591 1.20851 1.22553 1.48223 1.03811 1.04580 1.68157 1.21277 0.84411 0.96218 0.96467 1.20614 0.80951 0.79027 0.91054 1.90662 1.53485 1.52882 1.45802 1.45813 1.29965 1.48872 1.09609 1.21126 0.96890 0.97211 0.83294 1.21451 0.95205 0.87862 0.93307 0.93507 1.22909 0.91268 0.91752 0.96533 1.87827 1.37727 1.22639 1.82443 1.23066 0.99616 0.85219 0.95338 1.22061 0.93213 0.93368 0.94817 1.44437 1.20117 1.07412 1.61396 1.19035 0.86949 1.27444 1.06311 0.88508 1.25341 0.96011 0.98607 0.97005 1.69799 1.23566 1.34687 1.26103 0.87030 0.84861 0.78755 0.78239 1.21504 1.23091 1.19566 1.16615 0.83521 0.83349 0.81279 1.91051 1.34836 1.58121 1.59273 1.45757 1.06676 1.08152 1.68333 1.21746 1.01007 0.78066 1.03368 0.88116 0.89260 0.89355 0.86219 0.84977 0.74973 0.92087 0.91124 0.89360 0.92917 0.93021 0.89756 0.90012 0.94780 0.92564 0.91069 0.89516 0.89593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 9.85 36.00 0.35 -0.13 16 2 C 0.26 3.32 7.98 -154.16 -1.23 2.09 16 3 N -0.26 -4.34 12.53 32.97 0.41 -3.93 16 4 N -0.43 -7.73 3.11 -66.31 -0.21 -7.94 16 5 C 0.14 2.43 6.87 -5.19 -0.04 2.40 16 6 C 0.50 9.96 7.90 -10.99 -0.09 9.87 16 7 O -0.55 -12.76 16.43 5.55 0.09 -12.67 16 8 N -0.69 -13.09 3.77 -60.29 -0.23 -13.32 16 9 C 0.14 2.57 4.45 -4.04 -0.02 2.55 16 10 C 0.13 2.36 3.21 -67.42 -0.22 2.15 16 11 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 12 C 0.05 0.90 6.29 37.31 0.23 1.13 16 13 O -0.39 -6.95 10.74 -35.23 -0.38 -7.33 16 14 C 0.05 0.80 6.98 37.31 0.26 1.07 16 15 C 0.09 1.86 4.38 -3.54 -0.02 1.84 16 16 N -0.61 -13.13 2.78 -164.30 -0.46 -13.58 16 17 C -0.27 -6.67 7.54 -15.06 -0.11 -6.78 16 18 H 0.10 2.63 5.98 -52.49 -0.31 2.32 16 19 C 0.03 0.80 5.29 -17.43 -0.09 0.71 16 20 N -0.90 -25.41 13.97 55.49 0.78 -24.64 16 21 Si 0.88 20.58 24.28 -169.99 -4.13 16.46 16 22 H -0.29 -6.61 6.54 56.52 0.37 -6.24 16 23 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.27 -6.20 6.64 56.52 0.38 -5.83 16 25 C 0.65 11.64 8.60 -86.75 -0.75 10.89 16 26 O -0.56 -11.32 17.72 5.08 0.09 -11.23 16 27 N -0.56 -7.45 3.14 -125.41 -0.39 -7.84 16 28 C 0.10 0.81 10.85 59.85 0.65 1.46 16 29 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.12 1.77 8.11 -51.93 -0.42 1.34 16 33 H 0.13 2.19 8.14 -51.93 -0.42 1.77 16 34 H 0.41 7.75 7.33 -40.82 -0.30 7.45 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.46 7.56 -51.93 -0.39 1.07 16 37 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 1.27 8.14 -51.92 -0.42 0.84 16 41 H 0.08 1.80 4.89 -51.93 -0.25 1.55 16 42 H 0.03 0.71 6.82 -51.93 -0.35 0.35 16 43 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.09 0.73 8.08 -51.92 -0.42 0.31 16 46 H 0.09 0.37 7.79 -51.93 -0.40 -0.04 16 LS Contribution 373.37 15.07 5.63 5.63 Total: -1.00 -36.67 373.37 -6.55 -43.22 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -6.70 Total: 7.93 kcal Atomic # 6 Polarization: 30.30 SS G_CDS: -1.06 Total: 29.24 kcal Atomic # 7 Polarization: -71.15 SS G_CDS: -0.10 Total: -71.25 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.20 Total: -31.23 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.13 Total: 16.46 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.67 -6.55 -43.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272901541.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.204 kcal (2) G-P(sol) polarization free energy of solvation -36.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds