Wall clock time and date at job start Tue Mar 31 2020 22:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30271 * 126.28485 * 2 1 4 4 N 1.28667 * 109.38447 * 179.97438 * 3 2 1 5 5 C 1.30269 * 109.37908 * 0.02562 * 4 3 2 6 6 C 1.50703 * 126.28137 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47064 * 90.02262 * 6 5 4 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99566 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.47650 * 35.00435 * 10 9 7 12 12 C 1.52999 * 109.47357 * 275.00168 * 10 9 7 13 13 C 1.53002 * 109.46983 * 155.00136 * 10 9 7 14 14 H 1.09006 * 109.47080 * 60.00059 * 13 10 9 15 15 C 1.52999 * 109.47101 * 300.00189 * 13 10 9 16 16 N 1.46899 * 109.47227 * 179.97438 * 13 10 9 17 17 C 1.46907 * 110.99845 * 205.00302 * 16 13 10 18 18 C 1.50704 * 109.46847 * 179.97438 * 17 16 13 19 19 O 1.21294 * 120.00141 * 0.02562 * 18 17 16 20 20 N 1.34772 * 119.99923 * 179.97438 * 18 17 16 21 21 C 1.37091 * 120.00030 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00238 * 359.97438 * 21 20 18 23 23 C 1.38952 * 120.00107 * 179.97438 * 21 20 18 24 24 N 1.31412 * 120.00022 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00020 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46712 * 90.00464 * 25 23 21 27 27 H 1.48502 * 109.47045 * 210.00164 * 25 23 21 28 28 H 1.48495 * 109.47306 * 330.00482 * 25 23 21 29 29 O 1.34365 * 126.28030 * 180.28774 * 2 1 3 30 30 H 1.09001 * 109.47291 * 89.97722 * 1 2 3 31 31 H 1.08996 * 109.47230 * 209.97303 * 1 2 3 32 32 H 1.08993 * 109.47144 * 329.97267 * 1 2 3 33 33 H 1.09002 * 109.47152 * 330.02355 * 6 5 4 34 34 H 1.09001 * 109.46980 * 210.02455 * 6 5 4 35 35 H 0.96995 * 120.00011 * 0.02562 * 9 7 6 36 36 H 1.08993 * 109.47354 * 300.00073 * 12 10 9 37 37 H 1.09000 * 109.46920 * 60.00048 * 12 10 9 38 38 H 1.09004 * 109.47178 * 180.02562 * 12 10 9 39 39 H 1.08995 * 109.46779 * 299.99479 * 15 13 10 40 40 H 1.08996 * 109.47205 * 60.00086 * 15 13 10 41 41 H 1.09000 * 109.46580 * 179.97438 * 15 13 10 42 42 H 1.00898 * 110.99862 * 81.05147 * 16 13 10 43 43 H 1.08995 * 109.46981 * 300.00003 * 17 16 13 44 44 H 1.08993 * 109.47289 * 60.00353 * 17 16 13 45 45 H 0.97000 * 119.99730 * 0.02562 * 20 18 17 46 46 H 0.96996 * 120.00021 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5090 0.6760 0.0005 5 6 3.5654 -0.6254 0.0004 6 6 4.8177 -1.4638 0.0003 7 6 5.2347 -1.7440 1.4211 8 8 4.5793 -1.3063 2.3429 9 7 6.3355 -2.4817 1.6673 10 6 6.7405 -2.7545 3.0485 11 1 5.8534 -2.8703 3.6712 12 6 7.5828 -1.5897 3.5725 13 6 7.5664 -4.0417 3.0930 14 1 8.4536 -3.9259 2.4703 15 6 6.7241 -5.2065 2.5690 16 7 7.9731 -4.3149 4.4779 17 6 9.1932 -5.1323 4.5167 18 6 9.5791 -5.3908 5.9504 19 8 8.9039 -4.9391 6.8511 20 7 10.6738 -6.1249 6.2316 21 6 11.0246 -6.3605 7.5358 22 1 10.4239 -5.9576 8.3378 23 6 12.1530 -7.1178 7.8258 24 7 12.8842 -7.6076 6.8499 25 14 12.6313 -7.4383 9.6028 26 1 11.9779 -8.6858 10.0740 27 1 14.1059 -7.5848 9.6998 28 1 12.1905 -6.2992 10.4473 29 8 2.3021 -1.0831 -0.0054 30 1 -0.3634 0.0004 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3633 0.8897 0.5142 33 1 5.6149 -0.9262 -0.5131 34 1 4.6246 -2.4053 -0.5141 35 1 6.8594 -2.8320 0.9300 36 1 8.4699 -1.4738 2.9499 37 1 6.9944 -0.6727 3.5408 38 1 7.8846 -1.7929 4.6000 39 1 5.8370 -5.3223 3.1917 40 1 6.4227 -5.0035 1.5414 41 1 7.3127 -6.1233 2.6003 42 1 7.2262 -4.7553 4.9938 43 1 9.0110 -6.0811 4.0123 44 1 10.0017 -4.6024 4.0132 45 1 11.2135 -6.4864 5.5113 46 1 13.6721 -8.1359 7.0524 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275394725.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:55 Heat of formation + Delta-G solvation = -36.350371 kcal Electronic energy + Delta-G solvation = -28443.718121 eV Core-core repulsion = 24177.524816 eV Total energy + Delta-G solvation = -4266.193305 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.55731 -40.27189 -38.51730 -37.32203 -36.48928 -34.65110 -34.03088 -33.84256 -31.86394 -31.25742 -30.40442 -29.60791 -27.60776 -26.34402 -24.30905 -23.87726 -23.08699 -22.74246 -20.89654 -20.84646 -19.31861 -18.21454 -17.94336 -17.56397 -17.09545 -16.59474 -15.96022 -15.91862 -15.34818 -15.06340 -14.97261 -14.63203 -14.35355 -14.02433 -13.94017 -13.87145 -13.66109 -13.54939 -13.27145 -13.17406 -12.89745 -12.69868 -12.42272 -12.23161 -12.18720 -12.12983 -11.63875 -11.58979 -11.49513 -11.34776 -11.30079 -11.05529 -10.75794 -10.41063 -10.40210 -10.23674 -9.79270 -9.53120 -9.40170 -8.50633 -8.11145 -7.98379 -6.44031 -3.84785 0.75527 1.79208 2.02932 2.21005 2.78327 3.16513 3.25514 3.31679 3.36652 3.87954 3.93620 4.06050 4.20866 4.31245 4.35678 4.54739 4.59442 4.76953 4.81118 4.85475 4.96361 5.05998 5.11752 5.13683 5.16973 5.23793 5.37869 5.38937 5.43701 5.58496 5.63273 5.77426 5.81881 5.93961 5.98475 6.02388 6.20185 6.30102 6.51386 7.07615 7.14671 7.53340 7.56327 7.82307 7.96402 8.03948 8.58668 9.15818 9.51671 10.03024 10.73633 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.037003 B = 0.001587 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.510027 B =17644.424746 C =17769.892860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.165 3.835 3 N -0.288 5.288 4 N -0.272 5.272 5 C 0.182 3.818 6 C -0.047 4.047 7 C 0.519 3.481 8 O -0.525 6.525 9 N -0.717 5.717 10 C 0.154 3.846 11 H 0.090 0.910 12 C -0.153 4.153 13 C 0.077 3.923 14 H 0.083 0.917 15 C -0.185 4.185 16 N -0.658 5.658 17 C 0.053 3.947 18 C 0.440 3.560 19 O -0.582 6.582 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 O -0.221 6.221 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.142 0.858 34 H 0.128 0.872 35 H 0.400 0.600 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.088 0.912 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.353 0.647 43 H 0.044 0.956 44 H 0.086 0.914 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.792 7.889 -21.358 28.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.045 4.045 3 N -0.136 5.136 4 N -0.118 5.118 5 C -0.029 4.029 6 C -0.088 4.088 7 C 0.302 3.698 8 O -0.401 6.401 9 N -0.370 5.370 10 C 0.050 3.950 11 H 0.108 0.892 12 C -0.212 4.212 13 C -0.034 4.034 14 H 0.101 0.899 15 C -0.244 4.244 16 N -0.290 5.290 17 C -0.080 4.080 18 C 0.225 3.775 19 O -0.466 6.466 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 O -0.100 6.100 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.126 0.874 33 H 0.160 0.840 34 H 0.146 0.854 35 H 0.235 0.765 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.173 0.827 43 H 0.062 0.938 44 H 0.104 0.896 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.831 10.223 -19.958 28.649 hybrid contribution 0.321 -2.782 -0.293 2.816 sum -17.509 7.441 -20.252 27.786 Atomic orbital electron populations 1.20375 0.80081 1.05955 1.05206 1.28012 0.97847 0.79514 0.99168 1.74396 0.95961 1.25585 1.17643 1.74363 1.12370 1.08895 1.16215 1.26811 0.84699 0.91301 1.00117 1.20112 0.90264 1.00676 0.97758 1.19953 0.81040 0.78841 0.89940 1.90803 1.53356 1.50117 1.45789 1.45950 1.27506 1.53763 1.09734 1.20943 0.98406 0.94687 0.81003 0.89210 1.22044 0.98889 0.96880 1.03356 1.21754 0.97360 0.93092 0.91186 0.89917 1.22546 1.00883 0.99289 1.01637 1.59990 1.07341 1.51432 1.10236 1.21689 0.93382 0.95918 0.96972 1.19792 0.83982 0.84010 0.89709 1.90538 1.54053 1.54505 1.47519 1.41853 1.23466 1.45898 1.08769 1.19710 1.09051 1.30173 0.84002 0.87900 1.25257 0.96098 0.96782 0.99751 1.69608 1.17211 1.35570 1.31932 0.85857 0.77481 0.78925 0.82036 1.20437 1.20915 1.19385 1.84745 1.17365 1.38366 1.69554 0.88257 0.88756 0.87399 0.84006 0.85374 0.76526 0.93000 0.93027 0.89367 0.92176 0.92261 0.92132 0.82673 0.93767 0.89556 0.77493 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.24 10.51 36.01 0.38 0.14 16 2 C 0.17 1.58 8.48 -12.94 -0.11 1.47 16 3 N -0.29 -3.65 12.22 32.55 0.40 -3.25 16 4 N -0.27 -3.57 12.22 32.55 0.40 -3.18 16 5 C 0.18 1.92 6.97 -12.94 -0.09 1.83 16 6 C -0.05 -0.29 6.33 -29.03 -0.18 -0.47 16 7 C 0.52 5.00 7.79 -10.98 -0.09 4.92 16 8 O -0.53 -7.85 15.70 5.56 0.09 -7.76 16 9 N -0.72 -5.47 4.38 -53.80 -0.24 -5.71 16 10 C 0.15 1.65 2.34 -67.93 -0.16 1.49 16 11 H 0.09 1.18 7.58 -51.93 -0.39 0.79 16 12 C -0.15 -1.87 9.33 37.16 0.35 -1.52 16 13 C 0.08 0.80 2.22 -67.71 -0.15 0.65 16 14 H 0.08 0.76 7.80 -51.93 -0.40 0.36 16 15 C -0.18 -1.64 9.01 37.16 0.33 -1.30 16 16 N -0.66 -9.58 5.11 -107.99 -0.55 -10.13 16 17 C 0.05 0.86 5.97 -4.97 -0.03 0.83 16 18 C 0.44 10.02 7.82 -10.99 -0.09 9.94 16 19 O -0.58 -15.48 15.78 5.54 0.09 -15.39 16 20 N -0.56 -13.93 5.29 -10.96 -0.06 -13.99 16 21 C -0.30 -8.26 9.68 -14.94 -0.14 -8.41 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.17 13.05 55.50 0.72 -23.45 16 25 Si 0.93 20.89 29.55 -169.99 -5.02 15.86 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 29 O -0.22 -2.28 10.87 5.37 0.06 -2.22 16 30 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.14 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.13 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.40 1.65 8.39 -40.82 -0.34 1.31 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 1.27 7.60 -51.93 -0.39 0.88 16 39 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 40 H 0.06 0.39 7.44 -51.93 -0.39 0.01 16 41 H 0.06 0.57 7.45 -51.93 -0.39 0.18 16 42 H 0.35 5.52 8.17 -39.29 -0.32 5.20 16 43 H 0.04 0.64 7.44 -51.93 -0.39 0.25 16 44 H 0.09 1.28 8.05 -51.93 -0.42 0.86 16 45 H 0.39 9.22 7.90 -40.82 -0.32 8.90 16 46 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 395.85 15.07 5.97 5.97 Total: -1.00 -37.67 395.85 -4.87 -42.54 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -6.65 Total: 10.65 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: -0.08 Total: 10.06 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: 0.67 Total: -59.71 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: 0.23 Total: -25.37 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.67 -4.87 -42.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275394725.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.190 kcal (2) G-P(sol) polarization free energy of solvation -37.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds