Wall clock time and date at job start Tue Mar 31 2020 22:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30271 * 126.28485 * 2 1 4 4 N 1.28667 * 109.38447 * 179.97438 * 3 2 1 5 5 C 1.30269 * 109.37908 * 0.02562 * 4 3 2 6 6 C 1.50703 * 126.28137 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47064 * 90.02262 * 6 5 4 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99566 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.47650 * 35.00435 * 10 9 7 12 12 C 1.52999 * 109.47357 * 275.00168 * 10 9 7 13 13 C 1.53002 * 109.46983 * 155.00136 * 10 9 7 14 14 H 1.09006 * 109.47080 * 60.00059 * 13 10 9 15 15 C 1.52999 * 109.47101 * 300.00189 * 13 10 9 16 16 N 1.46899 * 109.47227 * 179.97438 * 13 10 9 17 17 C 1.46907 * 110.99845 * 205.00302 * 16 13 10 18 18 C 1.50704 * 109.46847 * 179.97438 * 17 16 13 19 19 O 1.21294 * 120.00141 * 0.02562 * 18 17 16 20 20 N 1.34772 * 119.99923 * 179.97438 * 18 17 16 21 21 C 1.37091 * 120.00030 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00238 * 359.97438 * 21 20 18 23 23 C 1.38952 * 120.00107 * 179.97438 * 21 20 18 24 24 N 1.31412 * 120.00022 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00020 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46712 * 90.00464 * 25 23 21 27 27 H 1.48502 * 109.47045 * 210.00164 * 25 23 21 28 28 H 1.48495 * 109.47306 * 330.00482 * 25 23 21 29 29 O 1.34365 * 126.28030 * 180.28774 * 2 1 3 30 30 H 1.09001 * 109.47291 * 89.97722 * 1 2 3 31 31 H 1.08996 * 109.47230 * 209.97303 * 1 2 3 32 32 H 1.08993 * 109.47144 * 329.97267 * 1 2 3 33 33 H 1.09002 * 109.47152 * 330.02355 * 6 5 4 34 34 H 1.09001 * 109.46980 * 210.02455 * 6 5 4 35 35 H 0.96995 * 120.00011 * 0.02562 * 9 7 6 36 36 H 1.08993 * 109.47354 * 300.00073 * 12 10 9 37 37 H 1.09000 * 109.46920 * 60.00048 * 12 10 9 38 38 H 1.09004 * 109.47178 * 180.02562 * 12 10 9 39 39 H 1.08995 * 109.46779 * 299.99479 * 15 13 10 40 40 H 1.08996 * 109.47205 * 60.00086 * 15 13 10 41 41 H 1.09000 * 109.46580 * 179.97438 * 15 13 10 42 42 H 1.00898 * 110.99862 * 81.05147 * 16 13 10 43 43 H 1.08995 * 109.46981 * 300.00003 * 17 16 13 44 44 H 1.08993 * 109.47289 * 60.00353 * 17 16 13 45 45 H 0.97000 * 119.99730 * 0.02562 * 20 18 17 46 46 H 0.96996 * 120.00021 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5090 0.6760 0.0005 5 6 3.5654 -0.6254 0.0004 6 6 4.8177 -1.4638 0.0003 7 6 5.2347 -1.7440 1.4211 8 8 4.5793 -1.3063 2.3429 9 7 6.3355 -2.4817 1.6673 10 6 6.7405 -2.7545 3.0485 11 1 5.8534 -2.8703 3.6712 12 6 7.5828 -1.5897 3.5725 13 6 7.5664 -4.0417 3.0930 14 1 8.4536 -3.9259 2.4703 15 6 6.7241 -5.2065 2.5690 16 7 7.9731 -4.3149 4.4779 17 6 9.1932 -5.1323 4.5167 18 6 9.5791 -5.3908 5.9504 19 8 8.9039 -4.9391 6.8511 20 7 10.6738 -6.1249 6.2316 21 6 11.0246 -6.3605 7.5358 22 1 10.4239 -5.9576 8.3378 23 6 12.1530 -7.1178 7.8258 24 7 12.8842 -7.6076 6.8499 25 14 12.6313 -7.4383 9.6028 26 1 11.9779 -8.6858 10.0740 27 1 14.1059 -7.5848 9.6998 28 1 12.1905 -6.2992 10.4473 29 8 2.3021 -1.0831 -0.0054 30 1 -0.3634 0.0004 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3633 0.8897 0.5142 33 1 5.6149 -0.9262 -0.5131 34 1 4.6246 -2.4053 -0.5141 35 1 6.8594 -2.8320 0.9300 36 1 8.4699 -1.4738 2.9499 37 1 6.9944 -0.6727 3.5408 38 1 7.8846 -1.7929 4.6000 39 1 5.8370 -5.3223 3.1917 40 1 6.4227 -5.0035 1.5414 41 1 7.3127 -6.1233 2.6003 42 1 7.2262 -4.7553 4.9938 43 1 9.0110 -6.0811 4.0123 44 1 10.0017 -4.6024 4.0132 45 1 11.2135 -6.4864 5.5113 46 1 13.6721 -8.1359 7.0524 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275394725.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:54 Heat of formation + Delta-G solvation = -71.634274 kcal Electronic energy + Delta-G solvation = -28445.248146 eV Core-core repulsion = 24177.524816 eV Total energy + Delta-G solvation = -4267.723330 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.30132 -41.09777 -40.16226 -38.47360 -37.26762 -36.05945 -35.43306 -34.67204 -33.26940 -32.56258 -31.24666 -30.49152 -28.29582 -27.86785 -25.82750 -24.85215 -23.88117 -23.49898 -21.78154 -21.65379 -21.04425 -19.90871 -18.96890 -18.33775 -17.96033 -17.60777 -17.36575 -16.67786 -16.59307 -16.37105 -16.01388 -15.66894 -15.62374 -15.25455 -15.03556 -14.95822 -14.63242 -14.27413 -14.00124 -13.95160 -13.60198 -13.54176 -13.50006 -13.46205 -13.35058 -13.11317 -12.97783 -12.95898 -12.69775 -12.54125 -12.40824 -12.22061 -12.12403 -12.03528 -11.66203 -11.49698 -11.25649 -10.54055 -10.35592 -10.19557 -9.99698 -9.26571 -8.45959 -5.94098 0.05337 1.15569 1.27978 1.38143 1.42305 1.48961 1.54552 2.04685 2.08042 2.30782 2.78218 3.02070 3.21858 3.37414 3.54128 3.63050 3.74074 3.84352 4.05131 4.12281 4.24051 4.33375 4.33997 4.42028 4.49179 4.50474 4.55435 4.58080 4.60065 4.65096 4.70002 4.83781 4.86650 4.99444 5.03049 5.06538 5.26714 5.36770 5.42193 5.50132 5.91830 6.13048 6.37388 6.47444 6.62075 7.14522 7.17406 7.19777 7.58660 8.14686 8.71247 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.037003 B = 0.001587 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.510027 B =17644.424746 C =17769.892860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.171 3.829 3 N -0.334 5.334 4 N -0.314 5.314 5 C 0.179 3.821 6 C -0.038 4.038 7 C 0.518 3.482 8 O -0.586 6.586 9 N -0.696 5.696 10 C 0.162 3.838 11 H 0.060 0.940 12 C -0.147 4.147 13 C 0.085 3.915 14 H 0.107 0.893 15 C -0.179 4.179 16 N -0.676 5.676 17 C 0.070 3.930 18 C 0.436 3.564 19 O -0.626 6.626 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.076 0.924 23 C -0.011 4.011 24 N -0.918 5.918 25 Si 0.990 3.010 26 H -0.271 1.271 27 H -0.270 1.270 28 H -0.276 1.276 29 O -0.228 6.228 30 H 0.126 0.874 31 H 0.111 0.889 32 H 0.115 0.885 33 H 0.174 0.826 34 H 0.175 0.825 35 H 0.423 0.577 36 H 0.069 0.931 37 H 0.034 0.966 38 H 0.060 0.940 39 H 0.045 0.955 40 H 0.089 0.911 41 H 0.060 0.940 42 H 0.344 0.656 43 H 0.071 0.929 44 H 0.109 0.891 45 H 0.397 0.603 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.614 6.603 -23.949 30.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.040 4.040 3 N -0.180 5.180 4 N -0.159 5.159 5 C -0.033 4.033 6 C -0.079 4.079 7 C 0.303 3.697 8 O -0.466 6.466 9 N -0.350 5.350 10 C 0.057 3.943 11 H 0.079 0.921 12 C -0.205 4.205 13 C -0.026 4.026 14 H 0.125 0.875 15 C -0.238 4.238 16 N -0.308 5.308 17 C -0.062 4.062 18 C 0.224 3.776 19 O -0.512 6.512 20 N -0.210 5.210 21 C -0.464 4.464 22 H 0.094 0.906 23 C -0.210 4.210 24 N -0.559 5.559 25 Si 0.814 3.186 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.201 1.201 29 O -0.108 6.108 30 H 0.144 0.856 31 H 0.129 0.871 32 H 0.134 0.866 33 H 0.192 0.808 34 H 0.192 0.808 35 H 0.262 0.738 36 H 0.088 0.912 37 H 0.053 0.947 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.108 0.892 41 H 0.080 0.920 42 H 0.163 0.837 43 H 0.089 0.911 44 H 0.127 0.873 45 H 0.231 0.769 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.615 8.930 -22.627 30.034 hybrid contribution 0.189 -2.344 0.499 2.404 sum -17.426 6.586 -22.129 28.927 Atomic orbital electron populations 1.20729 0.76549 1.07120 1.07209 1.29051 0.99488 0.78753 0.96717 1.74302 0.96417 1.27240 1.20046 1.74252 1.13057 1.10584 1.18003 1.27601 0.85861 0.91173 0.98704 1.20396 0.89256 1.02688 0.95518 1.20559 0.80510 0.77738 0.90843 1.90793 1.55315 1.52505 1.47976 1.45658 1.27168 1.53020 1.09122 1.20625 0.96995 0.94402 0.82293 0.92143 1.21946 0.99558 0.96783 1.02258 1.21776 0.98448 0.93197 0.89142 0.87492 1.22485 0.99958 0.98340 1.03000 1.59938 1.06663 1.51112 1.13038 1.21534 0.94676 0.97869 0.92092 1.20995 0.82445 0.81915 0.92293 1.90509 1.55116 1.55693 1.49902 1.41910 1.24384 1.46737 1.07993 1.19644 1.09996 1.31876 0.84915 0.90556 1.25974 0.95504 0.95996 1.03574 1.69657 1.17387 1.35506 1.33378 0.84971 0.77695 0.78560 0.77372 1.19658 1.19506 1.20056 1.84768 1.17577 1.38633 1.69803 0.85620 0.87054 0.86638 0.80831 0.80773 0.73797 0.91154 0.94718 0.92107 0.93547 0.89249 0.92047 0.83730 0.91090 0.87313 0.76876 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.38 10.51 71.24 0.75 0.37 16 2 C 0.17 3.19 8.48 88.34 0.75 3.94 16 3 N -0.33 -8.63 12.22 -165.50 -2.02 -10.65 16 4 N -0.31 -8.33 12.22 -165.50 -2.02 -10.36 16 5 C 0.18 3.59 6.97 88.34 0.62 4.21 16 6 C -0.04 -0.35 6.33 29.10 0.18 -0.17 16 7 C 0.52 9.13 7.79 87.66 0.68 9.81 16 8 O -0.59 -17.80 15.70 -3.03 -0.05 -17.85 16 9 N -0.70 -8.77 4.38 -442.53 -1.94 -10.71 16 10 C 0.16 3.30 2.34 44.99 0.11 3.41 16 11 H 0.06 1.63 7.58 -2.38 -0.02 1.61 16 12 C -0.15 -3.57 9.33 71.98 0.67 -2.89 16 13 C 0.08 1.54 2.22 44.92 0.10 1.64 16 14 H 0.11 1.50 7.80 -2.38 -0.02 1.48 16 15 C -0.18 -2.63 9.01 71.98 0.65 -1.98 16 16 N -0.68 -19.09 5.11 -495.56 -2.53 -21.62 16 17 C 0.07 2.16 5.97 85.56 0.51 2.67 16 18 C 0.44 20.02 7.82 87.66 0.69 20.70 16 19 O -0.63 -34.31 15.78 -3.07 -0.05 -34.36 16 20 N -0.57 -28.61 5.29 -306.99 -1.62 -30.24 16 21 C -0.33 -18.85 9.68 84.04 0.81 -18.04 16 22 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 23 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 24 N -0.92 -48.66 13.05 21.66 0.28 -48.37 16 25 Si 0.99 42.72 29.55 68.60 2.03 44.75 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 27 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 28 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 29 O -0.23 -4.48 10.87 -3.71 -0.04 -4.52 16 30 H 0.13 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.17 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.17 -0.01 8.14 -2.39 -0.02 -0.03 16 35 H 0.42 1.54 8.39 -92.71 -0.78 0.76 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.06 1.81 7.60 -2.38 -0.02 1.79 16 39 H 0.05 0.83 8.13 -2.39 -0.02 0.81 16 40 H 0.09 0.78 7.44 -2.39 -0.02 0.76 16 41 H 0.06 0.93 7.45 -2.39 -0.02 0.91 16 42 H 0.34 10.83 8.17 -89.70 -0.73 10.10 16 43 H 0.07 1.84 7.44 -2.39 -0.02 1.82 16 44 H 0.11 2.90 8.05 -2.39 -0.02 2.88 16 45 H 0.40 18.61 7.90 -92.71 -0.73 17.88 16 46 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -88.23 395.85 -2.18 -90.41 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: -1.20 Total: 29.95 kcal Atomic # 6 Polarization: 16.59 SS G_CDS: 6.98 Total: 23.58 kcal Atomic # 7 Polarization: -122.10 SS G_CDS: -9.86 Total: -131.96 kcal Atomic # 8 Polarization: -56.59 SS G_CDS: -0.14 Total: -56.73 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -88.23 -2.18 -90.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275394725.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.774 kcal (2) G-P(sol) polarization free energy of solvation -88.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds