Wall clock time and date at job start Tue Mar 31 2020 22:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30276 * 126.28250 * 2 1 4 4 N 1.28674 * 109.37873 * 179.97438 * 3 2 1 5 5 C 1.30272 * 109.38187 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.28028 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.47385 * 90.02472 * 6 5 4 8 8 O 1.21288 * 119.99699 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00263 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99726 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.47791 * 324.99683 * 10 9 7 12 12 C 1.53002 * 109.46953 * 85.00545 * 10 9 7 13 13 C 1.53009 * 109.46874 * 204.99791 * 10 9 7 14 14 H 1.08995 * 109.46607 * 65.00143 * 13 10 9 15 15 C 1.53002 * 109.46785 * 305.00434 * 13 10 9 16 16 N 1.46894 * 109.47185 * 185.00298 * 13 10 9 17 17 C 1.46892 * 111.00262 * 205.00130 * 16 13 10 18 18 C 1.50697 * 109.47575 * 179.97438 * 17 16 13 19 19 O 1.21297 * 119.99710 * 0.02562 * 18 17 16 20 20 N 1.34780 * 120.00531 * 180.02562 * 18 17 16 21 21 C 1.37098 * 120.00102 * 180.02562 * 20 18 17 22 22 H 1.07996 * 120.00474 * 359.97438 * 21 20 18 23 23 C 1.38946 * 119.99551 * 180.02562 * 21 20 18 24 24 N 1.31410 * 120.00639 * 359.97438 * 23 21 20 25 25 Si 1.86809 * 119.99878 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46830 * 89.99739 * 25 23 21 27 27 H 1.48497 * 109.47144 * 209.99971 * 25 23 21 28 28 H 1.48496 * 109.46918 * 330.00478 * 25 23 21 29 29 O 1.34364 * 107.43764 * 359.97438 * 5 4 3 30 30 H 1.08997 * 109.47444 * 90.01974 * 1 2 3 31 31 H 1.09002 * 109.46698 * 210.02579 * 1 2 3 32 32 H 1.09002 * 109.47090 * 330.01523 * 1 2 3 33 33 H 1.08995 * 109.47102 * 210.02300 * 6 5 4 34 34 H 1.09003 * 109.47108 * 330.02056 * 6 5 4 35 35 H 0.97000 * 119.99775 * 0.02562 * 9 7 6 36 36 H 1.08997 * 109.47576 * 59.99006 * 12 10 9 37 37 H 1.08998 * 109.46925 * 179.97438 * 12 10 9 38 38 H 1.09006 * 109.46621 * 299.99028 * 12 10 9 39 39 H 1.08992 * 109.47277 * 59.99989 * 15 13 10 40 40 H 1.09007 * 109.46355 * 179.97438 * 15 13 10 41 41 H 1.08995 * 109.47310 * 299.99278 * 15 13 10 42 42 H 1.00906 * 110.99854 * 81.04476 * 16 13 10 43 43 H 1.08998 * 109.47103 * 300.00029 * 17 16 13 44 44 H 1.09005 * 109.46989 * 60.00070 * 17 16 13 45 45 H 0.96999 * 119.99150 * 359.97438 * 20 18 17 46 46 H 0.96999 * 120.00371 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5091 0.6760 0.0005 5 6 3.5654 -0.6255 0.0004 6 6 4.8176 -1.4639 0.0014 7 6 5.2334 -1.7441 1.4225 8 8 4.5777 -1.3057 2.3438 9 7 6.3345 -2.4810 1.6696 10 6 6.7389 -2.7529 3.0512 11 1 6.5071 -1.8893 3.6744 12 6 5.9822 -3.9761 3.5728 13 6 8.2437 -3.0262 3.0977 14 1 8.7856 -2.1251 2.8106 15 6 8.5866 -4.1584 2.1274 16 7 8.6287 -3.4159 4.4607 17 6 10.0449 -3.1183 4.7131 18 6 10.4021 -3.5302 6.1180 19 8 9.5599 -4.0236 6.8381 20 7 11.6575 -3.3504 6.5745 21 6 11.9825 -3.7256 7.8524 22 1 11.2327 -4.1648 8.4935 23 6 13.2766 -3.5396 8.3231 24 7 14.1890 -3.0046 7.5432 25 14 13.7194 -4.0502 10.0646 26 1 14.1880 -5.4593 10.0632 27 1 14.7990 -3.1699 10.5791 28 1 12.5231 -3.9273 10.9357 29 8 2.3021 -1.0832 0.0002 30 1 -0.3634 -0.0004 -1.0276 31 1 -0.3633 -0.8898 0.5143 32 1 -0.3633 0.8901 0.5136 33 1 4.6250 -2.4052 -0.5131 34 1 5.6153 -0.9262 -0.5113 35 1 6.8596 -2.8306 0.9328 36 1 6.2140 -4.8398 2.9495 37 1 6.2834 -4.1787 4.6005 38 1 4.9102 -3.7814 3.5397 39 1 8.3009 -3.8693 1.1161 40 1 9.6587 -4.3527 2.1603 41 1 8.0447 -5.0595 2.4145 42 1 8.4285 -4.3906 4.6283 43 1 10.6637 -3.6686 4.0044 44 1 10.2184 -2.0489 4.5932 45 1 12.3310 -2.9561 5.9985 46 1 15.0922 -2.8745 7.8719 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275394726.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:57 Heat of formation + Delta-G solvation = -68.671176 kcal Electronic energy + Delta-G solvation = -28447.466672 eV Core-core repulsion = 24179.871832 eV Total energy + Delta-G solvation = -4267.594840 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.30152 -41.15024 -40.18018 -38.62774 -37.26811 -36.06909 -35.41034 -34.67480 -33.28308 -32.61353 -31.31564 -29.99373 -28.30239 -27.93644 -26.03508 -25.28990 -24.06008 -23.54019 -21.83470 -21.15468 -20.83204 -19.93171 -19.03462 -18.31366 -18.00830 -17.61242 -17.25049 -16.87112 -16.51966 -16.37657 -16.05504 -15.85896 -15.60141 -15.50359 -15.15922 -14.95537 -14.64465 -14.15652 -14.00209 -13.97332 -13.58907 -13.50197 -13.49585 -13.40643 -13.25265 -13.15708 -13.02611 -12.97004 -12.87266 -12.55092 -12.41430 -12.12942 -12.03559 -11.87420 -11.81939 -11.50142 -11.26284 -10.54554 -10.36598 -10.17964 -10.00745 -9.29048 -8.46469 -5.94977 0.05104 1.15344 1.27867 1.37906 1.41941 1.47697 1.54449 2.04979 2.06462 2.30225 2.78041 2.99628 3.21111 3.37285 3.54766 3.62550 3.79922 3.83539 3.92758 4.11371 4.24298 4.30843 4.33560 4.41309 4.45918 4.48157 4.55581 4.56283 4.57762 4.64229 4.70009 4.75996 4.87816 4.99773 5.02920 5.03654 5.24235 5.41310 5.43031 5.46733 5.90026 6.11042 6.42943 6.45032 6.60888 7.13361 7.15713 7.19658 7.57260 8.12852 8.70756 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028788 B = 0.001613 C = 0.001600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.387464 B =17350.850024 C =17501.230567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.171 3.829 3 N -0.334 5.334 4 N -0.314 5.314 5 C 0.179 3.821 6 C -0.038 4.038 7 C 0.516 3.484 8 O -0.586 6.586 9 N -0.698 5.698 10 C 0.160 3.840 11 H 0.058 0.942 12 C -0.156 4.156 13 C 0.083 3.917 14 H 0.091 0.909 15 C -0.184 4.184 16 N -0.678 5.678 17 C 0.068 3.932 18 C 0.436 3.564 19 O -0.624 6.624 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.078 0.922 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.992 3.008 26 H -0.269 1.269 27 H -0.271 1.271 28 H -0.275 1.275 29 O -0.228 6.228 30 H 0.126 0.874 31 H 0.111 0.889 32 H 0.115 0.885 33 H 0.175 0.825 34 H 0.175 0.825 35 H 0.421 0.579 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.040 0.960 39 H 0.092 0.908 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.349 0.651 43 H 0.074 0.926 44 H 0.101 0.899 45 H 0.397 0.603 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.270 -0.772 -25.155 31.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.040 4.040 3 N -0.180 5.180 4 N -0.159 5.159 5 C -0.034 4.034 6 C -0.079 4.079 7 C 0.302 3.698 8 O -0.466 6.466 9 N -0.353 5.353 10 C 0.055 3.945 11 H 0.077 0.923 12 C -0.214 4.214 13 C -0.027 4.027 14 H 0.109 0.891 15 C -0.243 4.243 16 N -0.311 5.311 17 C -0.064 4.064 18 C 0.224 3.776 19 O -0.511 6.511 20 N -0.210 5.210 21 C -0.465 4.465 22 H 0.096 0.904 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.815 3.185 26 H -0.195 1.195 27 H -0.196 1.196 28 H -0.200 1.200 29 O -0.107 6.107 30 H 0.144 0.856 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.193 0.807 34 H 0.192 0.808 35 H 0.261 0.739 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.111 0.889 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.169 0.831 43 H 0.092 0.908 44 H 0.119 0.881 45 H 0.231 0.769 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.916 1.088 -23.707 30.982 hybrid contribution 1.038 -1.726 0.312 2.038 sum -18.878 -0.637 -23.394 30.068 Atomic orbital electron populations 1.20733 0.76517 1.07123 1.07225 1.29061 0.99496 0.78745 0.96690 1.74308 0.96413 1.27253 1.20055 1.74257 1.13076 1.10588 1.17980 1.27593 0.85865 0.91165 0.98737 1.20397 0.89308 1.02706 0.95452 1.20611 0.80814 0.77492 0.90904 1.90797 1.54886 1.52838 1.48037 1.45815 1.27208 1.53077 1.09161 1.20639 0.93675 0.98041 0.82159 0.92348 1.22083 0.99323 0.97983 1.02003 1.21727 0.93868 0.99769 0.87365 0.89092 1.22570 1.02515 0.98617 1.00556 1.59926 1.17868 1.27649 1.25707 1.21530 0.90095 1.02631 0.92128 1.20952 0.82316 0.83471 0.90887 1.90499 1.49719 1.50318 1.60538 1.41922 1.09942 1.55531 1.13634 1.19660 0.96123 1.39785 0.90898 0.90430 1.26002 0.94874 0.96656 1.03591 1.69662 1.04093 1.44018 1.38218 0.84950 0.77864 0.78431 0.77221 1.19479 1.19594 1.20034 1.84766 1.17557 1.38621 1.69806 0.85584 0.87026 0.86661 0.80746 0.80783 0.73863 0.90188 0.92108 0.94046 0.88905 0.92074 0.91495 0.83071 0.90805 0.88091 0.76930 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.39 10.51 71.24 0.75 0.36 16 2 C 0.17 3.23 8.48 88.34 0.75 3.98 16 3 N -0.33 -8.75 12.22 -165.50 -2.02 -10.77 16 4 N -0.31 -8.46 12.22 -165.50 -2.02 -10.48 16 5 C 0.18 3.64 6.97 88.34 0.62 4.26 16 6 C -0.04 -0.37 6.33 29.10 0.18 -0.18 16 7 C 0.52 9.40 7.79 87.66 0.68 10.09 16 8 O -0.59 -18.19 15.70 -3.05 -0.05 -18.24 16 9 N -0.70 -9.18 4.99 -442.51 -2.21 -11.39 16 10 C 0.16 3.33 2.63 44.99 0.12 3.45 16 11 H 0.06 1.71 7.58 -2.39 -0.02 1.70 16 12 C -0.16 -3.36 8.86 71.98 0.64 -2.72 16 13 C 0.08 1.58 2.64 44.92 0.12 1.70 16 14 H 0.09 1.65 7.80 -2.39 -0.02 1.63 16 15 C -0.18 -2.25 8.68 71.98 0.62 -1.62 16 16 N -0.68 -19.59 5.23 -495.60 -2.59 -22.18 16 17 C 0.07 2.19 5.96 85.56 0.51 2.70 16 18 C 0.44 20.38 7.82 87.66 0.69 21.06 16 19 O -0.62 -34.38 15.78 -3.08 -0.05 -34.43 16 20 N -0.57 -29.08 5.29 -306.98 -1.62 -30.70 16 21 C -0.34 -19.03 9.68 84.04 0.81 -18.21 16 22 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 23 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 24 N -0.92 -49.25 13.05 21.66 0.28 -48.97 16 25 Si 0.99 42.98 29.55 68.60 2.03 45.01 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 28 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 29 O -0.23 -4.52 10.87 -3.71 -0.04 -4.56 16 30 H 0.13 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.18 0.03 8.14 -2.39 -0.02 0.01 16 34 H 0.17 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.42 1.84 6.58 -92.71 -0.61 1.23 16 36 H 0.08 1.29 6.57 -2.39 -0.02 1.27 16 37 H 0.06 1.60 7.13 -2.39 -0.02 1.58 16 38 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.09 0.47 6.29 -2.39 -0.02 0.46 16 40 H 0.06 0.83 7.45 -2.38 -0.02 0.82 16 41 H 0.07 0.85 6.55 -2.39 -0.02 0.83 16 42 H 0.35 10.52 7.39 -89.69 -0.66 9.86 16 43 H 0.07 1.97 7.44 -2.39 -0.02 1.95 16 44 H 0.10 2.98 8.06 -2.38 -0.02 2.96 16 45 H 0.40 18.99 7.90 -92.71 -0.73 18.26 16 46 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -89.06 389.12 -2.28 -91.34 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: -0.95 Total: 30.64 kcal Atomic # 6 Polarization: 17.77 SS G_CDS: 6.96 Total: 24.73 kcal Atomic # 7 Polarization: -124.31 SS G_CDS: -10.19 Total: -134.49 kcal Atomic # 8 Polarization: -57.09 SS G_CDS: -0.14 Total: -57.23 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -89.06 -2.28 -91.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275394726.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.669 kcal (2) G-P(sol) polarization free energy of solvation -89.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds