Wall clock time and date at job start Tue Mar 31 2020 22:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30651 * 128.64430 * 2 1 4 4 O 1.20833 * 109.61582 * 180.02562 * 3 2 1 5 5 N 1.20899 * 115.91247 * 359.73655 * 4 3 2 6 6 C 1.31603 * 109.17959 * 0.42591 * 5 4 3 7 7 C 1.48280 * 128.71087 * 179.88401 * 6 5 4 8 8 O 1.21503 * 119.99693 * 179.68310 * 7 6 5 9 9 N 1.34773 * 120.00106 * 359.67779 * 7 6 5 10 10 C 1.46496 * 119.99909 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.47459 * 35.00135 * 10 9 7 12 12 C 1.53006 * 109.46995 * 275.00159 * 10 9 7 13 13 C 1.52997 * 109.47194 * 155.00140 * 10 9 7 14 14 C 1.53003 * 109.46992 * 294.99585 * 13 10 9 15 15 C 1.53005 * 109.46900 * 180.02562 * 14 13 10 16 16 N 1.46898 * 109.46913 * 180.02562 * 15 14 13 17 17 C 1.46902 * 111.00206 * 179.97438 * 16 15 14 18 18 C 1.50695 * 109.46969 * 180.02562 * 17 16 15 19 19 O 1.21286 * 120.00734 * 0.02562 * 18 17 16 20 20 N 1.34781 * 119.99606 * 179.97438 * 18 17 16 21 21 C 1.37100 * 119.99860 * 179.97438 * 20 18 17 22 22 H 1.07996 * 120.00364 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99830 * 180.02562 * 21 20 18 24 24 N 1.31415 * 120.00222 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99993 * 180.02562 * 23 21 20 26 26 H 1.48490 * 109.47202 * 90.00200 * 25 23 21 27 27 H 1.48504 * 109.46952 * 210.00612 * 25 23 21 28 28 H 1.48501 * 109.46912 * 330.00015 * 25 23 21 29 29 H 1.08999 * 109.47516 * 269.98013 * 1 2 3 30 30 H 1.09007 * 109.47088 * 29.97470 * 1 2 3 31 31 H 1.09001 * 109.47501 * 149.96933 * 1 2 3 32 32 H 0.97003 * 120.00265 * 0.02562 * 9 7 6 33 33 H 1.09001 * 109.47002 * 299.99701 * 12 10 9 34 34 H 1.08993 * 109.46955 * 60.00138 * 12 10 9 35 35 H 1.09000 * 109.47050 * 179.97438 * 12 10 9 36 36 H 1.09002 * 109.47223 * 54.99994 * 13 10 9 37 37 H 1.09006 * 109.47396 * 175.00204 * 13 10 9 38 38 H 1.09000 * 109.46966 * 300.00238 * 14 13 10 39 39 H 1.08998 * 109.46717 * 60.00358 * 14 13 10 40 40 H 1.09000 * 109.46872 * 299.99535 * 15 14 13 41 41 H 1.08998 * 109.47316 * 60.00513 * 15 14 13 42 42 H 1.00896 * 111.00049 * 303.95239 * 16 15 14 43 43 H 1.09004 * 109.46826 * 300.00111 * 17 16 15 44 44 H 1.08996 * 109.46532 * 59.99857 * 17 16 15 45 45 H 0.97001 * 120.00300 * 0.02562 * 20 18 17 46 46 H 0.97001 * 120.00403 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3228 1.0204 0.0000 4 8 3.4651 0.6265 -0.0005 5 7 3.6101 -0.5738 0.0041 6 6 2.4279 -1.1520 -0.0006 7 6 2.1033 -2.5989 -0.0001 8 8 0.9435 -2.9612 0.0008 9 7 3.0946 -3.5119 -0.0009 10 6 2.7738 -4.9413 -0.0010 11 1 1.8725 -5.1115 -0.5900 12 6 2.5402 -5.4117 1.4361 13 6 3.9374 -5.7251 -0.6113 14 6 4.0910 -5.3447 -2.0853 15 6 5.2542 -6.1290 -2.6959 16 7 5.4021 -5.7633 -4.1109 17 6 6.5126 -6.4981 -4.7314 18 6 6.6335 -6.0972 -6.1790 19 8 5.8702 -5.2795 -6.6477 20 7 7.5907 -6.6466 -6.9526 21 6 7.7004 -6.2823 -8.2697 22 1 7.0202 -5.5548 -8.6873 23 6 8.6869 -6.8491 -9.0675 24 7 9.5144 -7.7348 -8.5595 25 14 8.8369 -6.3523 -10.8619 26 1 9.7570 -5.1927 -10.9792 27 1 9.3741 -7.4920 -11.6478 28 1 7.4987 -5.9773 -11.3852 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3634 0.8903 -0.5135 31 1 -0.3634 -0.8897 -0.5143 32 1 4.0205 -3.2227 -0.0013 33 1 3.4415 -5.2417 2.0251 34 1 1.7112 -4.8534 1.8709 35 1 2.3011 -6.4752 1.4360 36 1 4.8567 -5.4860 -0.0766 37 1 3.7377 -6.7937 -0.5309 38 1 3.1717 -5.5838 -2.6200 39 1 4.2907 -4.2762 -2.1658 40 1 6.1736 -5.8902 -2.1613 41 1 5.0541 -7.1974 -2.6154 42 1 4.5414 -5.9146 -4.6153 43 1 7.4405 -6.2619 -4.2105 44 1 6.3213 -7.5691 -4.6653 45 1 8.2015 -7.3003 -6.5777 46 1 10.2028 -8.1307 -9.1165 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277372931.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:48 Heat of formation + Delta-G solvation = 26.927538 kcal Electronic energy + Delta-G solvation = -28108.535074 eV Core-core repulsion = 23845.085705 eV Total energy + Delta-G solvation = -4263.449369 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -47.28683 -40.37104 -38.33685 -37.32783 -35.74417 -35.47087 -35.12064 -33.89695 -32.67956 -31.25047 -30.76717 -29.79508 -27.37922 -26.35536 -25.12397 -23.57161 -23.03450 -21.97690 -21.44539 -21.00558 -19.44933 -19.21666 -18.87994 -17.88072 -17.57743 -16.82563 -16.22280 -15.70643 -15.50938 -15.05235 -14.81671 -14.55414 -14.43978 -14.25882 -14.01900 -13.96674 -13.80500 -13.69260 -13.36266 -13.20517 -12.81563 -12.54254 -12.40392 -12.29339 -12.05158 -11.72081 -11.64719 -11.57384 -11.49944 -11.39074 -11.09883 -11.00672 -10.85279 -10.78309 -10.72525 -10.39401 -10.21826 -9.64359 -9.51068 -8.46621 -8.06148 -7.95918 -6.41801 -3.82606 0.32646 0.89270 2.18720 2.48962 2.94003 3.00477 3.18052 3.26520 3.32500 3.43830 3.90654 4.00683 4.20131 4.24150 4.36527 4.49137 4.64826 4.67721 4.74275 4.95500 4.98499 5.11002 5.14048 5.17682 5.21160 5.26320 5.31185 5.41696 5.48372 5.52342 5.59105 5.65194 5.77966 5.79961 5.90044 5.97787 6.08213 6.12903 6.27494 6.84425 7.22211 7.49123 7.55192 7.65792 8.02049 8.06382 8.61303 9.17858 9.54240 10.05811 10.75932 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013694 B = 0.001779 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.260838 B =15733.655811 C =17105.869344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.062 3.938 3 N -0.356 5.356 4 O 0.345 5.655 5 N -0.317 5.317 6 C -0.046 4.046 7 C 0.610 3.390 8 O -0.512 6.512 9 N -0.702 5.702 10 C 0.142 3.858 11 H 0.095 0.905 12 C -0.165 4.165 13 C -0.126 4.126 14 C -0.119 4.119 15 C 0.059 3.941 16 N -0.671 5.671 17 C 0.051 3.949 18 C 0.440 3.560 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.409 0.591 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.026 0.974 42 H 0.349 0.651 43 H 0.085 0.915 44 H 0.043 0.957 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.084 6.965 24.127 28.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 N -0.082 5.082 4 O 0.119 5.881 5 N -0.037 5.037 6 C -0.212 4.212 7 C 0.392 3.608 8 O -0.386 6.386 9 N -0.354 5.354 10 C 0.039 3.961 11 H 0.113 0.887 12 C -0.223 4.223 13 C -0.165 4.165 14 C -0.157 4.157 15 C -0.070 4.070 16 N -0.303 5.303 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.121 0.879 32 H 0.245 0.755 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.044 0.956 42 H 0.168 0.832 43 H 0.103 0.897 44 H 0.061 0.939 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.945 8.349 23.837 28.851 hybrid contribution 0.161 -1.488 -0.756 1.677 sum -13.783 6.860 23.081 27.745 Atomic orbital electron populations 1.20358 0.82849 1.05449 1.04708 1.26263 1.00419 0.85085 0.98644 1.75093 0.91120 1.23956 1.18016 1.85083 1.23325 1.16520 1.63154 1.75375 1.22975 0.92962 1.12367 1.26069 0.88247 0.98451 1.08428 1.16411 0.85683 0.81495 0.77190 1.90823 1.18834 1.79509 1.49428 1.45962 1.09546 1.06523 1.73362 1.21167 0.99668 0.77980 0.97334 0.88660 1.22194 1.02324 1.01963 0.95800 1.21900 0.97749 1.00592 0.96240 1.21582 0.98629 1.01473 0.94034 1.21963 0.98550 0.96619 0.89889 1.60058 1.08824 1.60005 1.01457 1.21665 0.95792 0.95599 0.95116 1.19828 0.84530 0.85844 0.87237 1.90521 1.45191 1.36396 1.74638 1.41869 1.29143 1.38730 1.10333 1.19707 1.15047 1.22987 0.85129 0.87933 1.25270 0.95842 0.96327 1.00569 1.69613 1.18979 1.28393 1.37364 0.85848 0.78736 0.77934 0.81717 1.20373 1.20938 1.19430 0.88828 0.89300 0.87908 0.75530 0.92211 0.91998 0.91030 0.90915 0.89787 0.91747 0.90933 0.91186 0.95579 0.83227 0.89651 0.93929 0.77460 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 10.22 36.00 0.37 -0.08 16 2 C 0.06 0.55 7.79 -79.33 -0.62 -0.07 16 3 N -0.36 -3.42 12.22 33.75 0.41 -3.00 16 4 O 0.35 3.32 11.65 27.27 0.32 3.64 16 5 N -0.32 -3.08 12.13 33.49 0.41 -2.67 16 6 C -0.05 -0.44 7.56 -80.07 -0.61 -1.05 16 7 C 0.61 5.92 7.81 -12.13 -0.09 5.83 16 8 O -0.51 -5.89 15.62 5.36 0.08 -5.81 16 9 N -0.70 -5.52 4.53 -54.61 -0.25 -5.77 16 10 C 0.14 1.00 2.57 -67.93 -0.17 0.83 16 11 H 0.10 0.80 7.58 -51.93 -0.39 0.40 16 12 C -0.16 -1.00 9.48 37.16 0.35 -0.64 16 13 C -0.13 -0.83 4.75 -26.73 -0.13 -0.95 16 14 C -0.12 -1.13 5.36 -26.73 -0.14 -1.27 16 15 C 0.06 0.68 5.69 -3.82 -0.02 0.66 16 16 N -0.67 -10.86 6.12 -115.06 -0.70 -11.56 16 17 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 18 C 0.44 10.55 7.82 -10.99 -0.09 10.46 16 19 O -0.58 -16.12 15.78 5.55 0.09 -16.03 16 20 N -0.56 -14.45 5.29 -10.96 -0.06 -14.51 16 21 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 22 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.64 13.05 55.50 0.72 -23.92 16 25 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.41 8.14 -51.92 -0.42 -0.01 16 31 H 0.10 0.66 7.31 -51.93 -0.38 0.28 16 32 H 0.41 2.86 8.46 -40.82 -0.35 2.52 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.78 7.75 -51.93 -0.40 0.38 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 42 H 0.35 5.86 8.43 -39.29 -0.33 5.53 16 43 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 44 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 46 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 398.28 15.07 6.00 6.00 Total: -1.00 -33.06 398.28 -6.18 -39.24 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -6.76 Total: 11.74 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -1.42 Total: 6.49 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: 0.53 Total: -61.43 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: 0.49 Total: -18.20 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.06 -6.18 -39.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277372931.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.164 kcal (2) G-P(sol) polarization free energy of solvation -33.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds