Wall clock time and date at job start Tue Mar 31 2020 22:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30651 * 128.64430 * 2 1 4 4 O 1.20833 * 109.61582 * 180.02562 * 3 2 1 5 5 N 1.20899 * 115.91247 * 359.73655 * 4 3 2 6 6 C 1.31603 * 109.17959 * 0.42591 * 5 4 3 7 7 C 1.48280 * 128.71087 * 179.88401 * 6 5 4 8 8 O 1.21503 * 119.99693 * 179.68310 * 7 6 5 9 9 N 1.34773 * 120.00106 * 359.67779 * 7 6 5 10 10 C 1.46496 * 119.99909 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.47459 * 35.00135 * 10 9 7 12 12 C 1.53006 * 109.46995 * 275.00159 * 10 9 7 13 13 C 1.52997 * 109.47194 * 155.00140 * 10 9 7 14 14 C 1.53003 * 109.46992 * 294.99585 * 13 10 9 15 15 C 1.53005 * 109.46900 * 180.02562 * 14 13 10 16 16 N 1.46898 * 109.46913 * 180.02562 * 15 14 13 17 17 C 1.46902 * 111.00206 * 179.97438 * 16 15 14 18 18 C 1.50695 * 109.46969 * 180.02562 * 17 16 15 19 19 O 1.21286 * 120.00734 * 0.02562 * 18 17 16 20 20 N 1.34781 * 119.99606 * 179.97438 * 18 17 16 21 21 C 1.37100 * 119.99860 * 179.97438 * 20 18 17 22 22 H 1.07996 * 120.00364 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99830 * 180.02562 * 21 20 18 24 24 N 1.31415 * 120.00222 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99993 * 180.02562 * 23 21 20 26 26 H 1.48490 * 109.47202 * 90.00200 * 25 23 21 27 27 H 1.48504 * 109.46952 * 210.00612 * 25 23 21 28 28 H 1.48501 * 109.46912 * 330.00015 * 25 23 21 29 29 H 1.08999 * 109.47516 * 269.98013 * 1 2 3 30 30 H 1.09007 * 109.47088 * 29.97470 * 1 2 3 31 31 H 1.09001 * 109.47501 * 149.96933 * 1 2 3 32 32 H 0.97003 * 120.00265 * 0.02562 * 9 7 6 33 33 H 1.09001 * 109.47002 * 299.99701 * 12 10 9 34 34 H 1.08993 * 109.46955 * 60.00138 * 12 10 9 35 35 H 1.09000 * 109.47050 * 179.97438 * 12 10 9 36 36 H 1.09002 * 109.47223 * 54.99994 * 13 10 9 37 37 H 1.09006 * 109.47396 * 175.00204 * 13 10 9 38 38 H 1.09000 * 109.46966 * 300.00238 * 14 13 10 39 39 H 1.08998 * 109.46717 * 60.00358 * 14 13 10 40 40 H 1.09000 * 109.46872 * 299.99535 * 15 14 13 41 41 H 1.08998 * 109.47316 * 60.00513 * 15 14 13 42 42 H 1.00896 * 111.00049 * 303.95239 * 16 15 14 43 43 H 1.09004 * 109.46826 * 300.00111 * 17 16 15 44 44 H 1.08996 * 109.46532 * 59.99857 * 17 16 15 45 45 H 0.97001 * 120.00300 * 0.02562 * 20 18 17 46 46 H 0.97001 * 120.00403 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3228 1.0204 0.0000 4 8 3.4651 0.6265 -0.0005 5 7 3.6101 -0.5738 0.0041 6 6 2.4279 -1.1520 -0.0006 7 6 2.1033 -2.5989 -0.0001 8 8 0.9435 -2.9612 0.0008 9 7 3.0946 -3.5119 -0.0009 10 6 2.7738 -4.9413 -0.0010 11 1 1.8725 -5.1115 -0.5900 12 6 2.5402 -5.4117 1.4361 13 6 3.9374 -5.7251 -0.6113 14 6 4.0910 -5.3447 -2.0853 15 6 5.2542 -6.1290 -2.6959 16 7 5.4021 -5.7633 -4.1109 17 6 6.5126 -6.4981 -4.7314 18 6 6.6335 -6.0972 -6.1790 19 8 5.8702 -5.2795 -6.6477 20 7 7.5907 -6.6466 -6.9526 21 6 7.7004 -6.2823 -8.2697 22 1 7.0202 -5.5548 -8.6873 23 6 8.6869 -6.8491 -9.0675 24 7 9.5144 -7.7348 -8.5595 25 14 8.8369 -6.3523 -10.8619 26 1 9.7570 -5.1927 -10.9792 27 1 9.3741 -7.4920 -11.6478 28 1 7.4987 -5.9773 -11.3852 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3634 0.8903 -0.5135 31 1 -0.3634 -0.8897 -0.5143 32 1 4.0205 -3.2227 -0.0013 33 1 3.4415 -5.2417 2.0251 34 1 1.7112 -4.8534 1.8709 35 1 2.3011 -6.4752 1.4360 36 1 4.8567 -5.4860 -0.0766 37 1 3.7377 -6.7937 -0.5309 38 1 3.1717 -5.5838 -2.6200 39 1 4.2907 -4.2762 -2.1658 40 1 6.1736 -5.8902 -2.1613 41 1 5.0541 -7.1974 -2.6154 42 1 4.5414 -5.9146 -4.6153 43 1 7.4405 -6.2619 -4.2105 44 1 6.3213 -7.5691 -4.6653 45 1 8.2015 -7.3003 -6.5777 46 1 10.2028 -8.1307 -9.1165 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277372931.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:47 Heat of formation + Delta-G solvation = 1.583729 kcal Electronic energy + Delta-G solvation = -28109.634064 eV Core-core repulsion = 23845.085705 eV Total energy + Delta-G solvation = -4264.548359 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.00803 -41.09385 -40.17324 -38.15261 -36.78380 -36.25712 -35.90329 -35.82655 -33.59002 -33.22996 -31.57807 -30.36644 -28.66590 -27.10079 -26.61965 -24.89098 -23.74143 -22.74704 -22.24844 -21.66591 -21.05379 -20.18122 -19.91744 -19.59327 -18.29111 -17.83714 -17.49335 -17.09524 -16.51632 -16.24909 -16.03666 -15.81587 -15.57540 -15.26347 -15.14958 -14.95481 -14.54007 -14.47161 -14.26925 -14.19020 -14.06353 -13.53018 -13.33280 -13.12304 -13.05213 -12.97633 -12.96226 -12.77326 -12.44145 -12.38567 -12.31652 -12.16996 -12.11027 -11.83165 -11.60040 -11.52597 -11.48397 -11.42247 -10.37833 -10.30079 -10.03288 -9.31673 -8.48142 -5.97068 -0.42212 0.19604 1.37122 1.40958 1.49762 1.53721 1.74333 2.03323 2.24994 2.28249 2.31739 2.76354 2.91541 3.18907 3.48287 3.54957 3.65606 3.78090 4.02342 4.05421 4.10726 4.27670 4.31140 4.41971 4.51080 4.54881 4.56883 4.62987 4.67986 4.69999 4.79013 4.83990 4.90320 5.02580 5.05316 5.18558 5.29408 5.38401 5.39905 5.41905 5.89504 6.11761 6.17296 6.40186 6.58644 6.79551 7.10992 7.28890 7.54395 8.09937 8.69144 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013694 B = 0.001779 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.260838 B =15733.655811 C =17105.869344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.063 3.937 3 N -0.366 5.366 4 O 0.340 5.660 5 N -0.321 5.321 6 C -0.056 4.056 7 C 0.608 3.392 8 O -0.534 6.534 9 N -0.694 5.694 10 C 0.142 3.858 11 H 0.081 0.919 12 C -0.158 4.158 13 C -0.114 4.114 14 C -0.113 4.113 15 C 0.061 3.939 16 N -0.690 5.690 17 C 0.066 3.934 18 C 0.435 3.565 19 O -0.626 6.626 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.077 0.923 23 C -0.013 4.013 24 N -0.919 5.919 25 Si 0.993 3.007 26 H -0.271 1.271 27 H -0.269 1.269 28 H -0.274 1.274 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.414 0.586 33 H 0.068 0.932 34 H 0.046 0.954 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.043 0.957 42 H 0.341 0.659 43 H 0.104 0.896 44 H 0.068 0.932 45 H 0.397 0.603 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.783 6.094 25.192 29.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.103 4.103 3 N -0.093 5.093 4 O 0.116 5.884 5 N -0.040 5.040 6 C -0.222 4.222 7 C 0.390 3.610 8 O -0.410 6.410 9 N -0.346 5.346 10 C 0.039 3.961 11 H 0.099 0.901 12 C -0.217 4.217 13 C -0.153 4.153 14 C -0.151 4.151 15 C -0.068 4.068 16 N -0.323 5.323 17 C -0.067 4.067 18 C 0.223 3.777 19 O -0.512 6.512 20 N -0.210 5.210 21 C -0.465 4.465 22 H 0.095 0.905 23 C -0.213 4.213 24 N -0.560 5.560 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.194 1.194 28 H -0.198 1.198 29 H 0.129 0.871 30 H 0.122 0.878 31 H 0.116 0.884 32 H 0.250 0.750 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.120 0.880 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.062 0.938 42 H 0.160 0.840 43 H 0.122 0.878 44 H 0.085 0.915 45 H 0.231 0.769 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.598 7.451 24.939 29.366 hybrid contribution 0.045 -1.216 -1.049 1.606 sum -13.554 6.235 23.890 28.166 Atomic orbital electron populations 1.20503 0.80986 1.05889 1.05902 1.26739 1.01521 0.84536 0.97505 1.75087 0.91176 1.24277 1.18808 1.85068 1.23526 1.16451 1.63385 1.75344 1.23179 0.93086 1.12424 1.26190 0.88517 0.98725 1.08759 1.16474 0.85681 0.81699 0.77099 1.90807 1.19634 1.79807 1.50737 1.46007 1.09480 1.06785 1.72311 1.21227 0.99415 0.77453 0.98040 0.90073 1.22140 1.02191 1.02589 0.94736 1.21829 0.98078 1.01411 0.93944 1.21516 0.97490 1.00242 0.95899 1.22080 0.99758 0.97888 0.87057 1.60083 1.07999 1.60559 1.03611 1.21528 0.97432 0.97013 0.90682 1.20962 0.82875 0.84394 0.89515 1.90487 1.46461 1.38097 1.76203 1.41939 1.29907 1.39203 1.09933 1.19659 1.15952 1.24005 0.86867 0.90459 1.26053 0.94962 0.95912 1.04381 1.69668 1.19031 1.28470 1.38812 0.84922 0.78475 0.78126 0.76775 1.19650 1.19381 1.19843 0.87147 0.87812 0.88396 0.74957 0.91255 0.93477 0.89543 0.89444 0.88011 0.92561 0.92520 0.90179 0.93841 0.84035 0.87772 0.91466 0.76895 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.22 71.23 0.73 -0.11 16 2 C 0.06 1.09 7.79 45.17 0.35 1.44 16 3 N -0.37 -6.95 12.22 -51.82 -0.63 -7.59 16 4 O 0.34 6.57 11.65 140.86 1.64 8.21 16 5 N -0.32 -6.21 12.13 -52.06 -0.63 -6.84 16 6 C -0.06 -1.08 7.56 44.29 0.34 -0.74 16 7 C 0.61 11.71 7.81 86.92 0.68 12.39 16 8 O -0.53 -12.30 15.62 -3.72 -0.06 -12.36 16 9 N -0.69 -10.38 4.53 -445.00 -2.01 -12.40 16 10 C 0.14 1.80 2.57 44.99 0.12 1.91 16 11 H 0.08 1.30 7.58 -2.39 -0.02 1.28 16 12 C -0.16 -1.62 9.48 71.98 0.68 -0.93 16 13 C -0.11 -1.20 4.75 30.59 0.15 -1.05 16 14 C -0.11 -1.97 5.36 30.60 0.16 -1.81 16 15 C 0.06 1.25 5.69 86.31 0.49 1.74 16 16 N -0.69 -21.55 6.12 -517.93 -3.17 -24.73 16 17 C 0.07 2.24 6.17 85.56 0.53 2.77 16 18 C 0.43 20.99 7.82 87.65 0.69 21.67 16 19 O -0.63 -35.45 15.78 -3.05 -0.05 -35.50 16 20 N -0.57 -29.66 5.29 -306.99 -1.62 -31.28 16 21 C -0.34 -19.26 9.68 84.04 0.81 -18.45 16 22 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 23 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 24 N -0.92 -49.62 13.05 21.66 0.28 -49.34 16 25 Si 0.99 43.18 29.55 68.60 2.03 45.21 16 26 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 27 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 28 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 29 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.10 1.22 7.31 -2.39 -0.02 1.20 16 32 H 0.41 5.38 8.46 -92.71 -0.78 4.60 16 33 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.10 0.78 8.14 -2.38 -0.02 0.77 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.06 1.17 7.75 -2.39 -0.02 1.15 16 40 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.34 11.39 8.43 -89.70 -0.76 10.63 16 43 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 44 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.40 19.38 7.90 -92.71 -0.73 18.65 16 46 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -72.22 398.28 0.73 -71.49 By element: Atomic # 1 Polarization: 37.76 SS G_CDS: -1.23 Total: 36.53 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: 6.19 Total: 18.59 kcal Atomic # 7 Polarization: -124.38 SS G_CDS: -7.79 Total: -132.17 kcal Atomic # 8 Polarization: -41.18 SS G_CDS: 1.53 Total: -39.65 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -72.22 0.73 -71.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277372931.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.074 kcal (2) G-P(sol) polarization free energy of solvation -72.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds