Wall clock time and date at job start Tue Mar 31 2020 22:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30651 * 128.64585 * 2 1 4 4 O 1.20832 * 109.62455 * 180.02562 * 3 2 1 5 5 N 1.20909 * 115.90474 * 359.73673 * 4 3 2 6 6 C 1.31600 * 109.18063 * 0.42567 * 5 4 3 7 7 C 1.48283 * 128.71207 * 179.88266 * 6 5 4 8 8 O 1.21500 * 119.99702 * 179.67672 * 7 6 5 9 9 N 1.34769 * 119.99646 * 359.68109 * 7 6 5 10 10 C 1.46505 * 119.99686 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47068 * 324.99893 * 10 9 7 12 12 C 1.53002 * 109.47411 * 84.99974 * 10 9 7 13 13 C 1.52997 * 109.47212 * 204.99833 * 10 9 7 14 14 C 1.53004 * 109.47236 * 64.99775 * 13 10 9 15 15 C 1.52997 * 109.47236 * 180.02562 * 14 13 10 16 16 N 1.46905 * 109.47150 * 179.97438 * 15 14 13 17 17 C 1.46900 * 111.00154 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47158 * 180.02562 * 17 16 15 19 19 O 1.21292 * 119.99907 * 0.02562 * 18 17 16 20 20 N 1.34773 * 119.99982 * 179.97438 * 18 17 16 21 21 C 1.37102 * 120.00162 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99314 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00126 * 180.02562 * 21 20 18 24 24 N 1.31417 * 119.99734 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 119.99836 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47246 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47316 * 119.99949 * 25 23 21 28 28 H 1.48509 * 109.47035 * 239.99745 * 25 23 21 29 29 H 1.08996 * 109.47004 * 269.97574 * 1 2 3 30 30 H 1.09004 * 109.47131 * 29.97945 * 1 2 3 31 31 H 1.09007 * 109.47058 * 149.97317 * 1 2 3 32 32 H 0.97000 * 120.00680 * 359.97438 * 9 7 6 33 33 H 1.08996 * 109.47407 * 180.02562 * 12 10 9 34 34 H 1.09000 * 109.46986 * 300.00092 * 12 10 9 35 35 H 1.09002 * 109.47075 * 59.99363 * 12 10 9 36 36 H 1.09001 * 109.47630 * 184.99905 * 13 10 9 37 37 H 1.09004 * 109.47346 * 305.00035 * 13 10 9 38 38 H 1.09001 * 109.46917 * 300.00567 * 14 13 10 39 39 H 1.09004 * 109.46741 * 59.99889 * 14 13 10 40 40 H 1.08993 * 109.47322 * 300.00158 * 15 14 13 41 41 H 1.09004 * 109.46881 * 60.00519 * 15 14 13 42 42 H 1.00903 * 110.99958 * 303.95831 * 16 15 14 43 43 H 1.08996 * 109.46846 * 300.00213 * 17 16 15 44 44 H 1.08999 * 109.47196 * 60.00064 * 17 16 15 45 45 H 0.97003 * 119.99777 * 359.97438 * 20 18 17 46 46 H 0.96996 * 119.99482 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3229 1.0204 0.0000 4 8 3.4652 0.6266 -0.0005 5 7 3.6101 -0.5738 0.0041 6 6 2.4280 -1.1520 -0.0006 7 6 2.1033 -2.5989 -0.0002 8 8 0.9436 -2.9612 0.0009 9 7 3.0947 -3.5118 -0.0009 10 6 2.7739 -4.9413 -0.0010 11 1 1.8733 -5.1117 0.5889 12 6 2.5389 -5.4112 -1.4380 13 6 3.9382 -5.7253 0.6078 14 6 4.0935 -5.3455 2.0818 15 6 5.2581 -6.1290 2.6905 16 7 5.4076 -5.7638 4.1055 17 6 6.5195 -6.4979 4.7241 18 6 6.6413 -6.0985 6.1721 19 8 5.8767 -5.2829 6.6426 20 7 7.5991 -6.6483 6.9445 21 6 7.7096 -6.2854 8.2620 22 1 7.0293 -5.5585 8.6806 23 6 8.6975 -6.8519 9.0582 24 7 9.5255 -7.7359 8.5485 25 14 8.8484 -6.3568 10.8530 26 1 7.8049 -5.3518 11.1787 27 1 8.6694 -7.5537 11.7134 28 1 10.1916 -5.7707 11.0935 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5143 32 1 4.0205 -3.2226 -0.0020 33 1 2.2998 -6.4746 -1.4381 34 1 1.7094 -4.8527 -1.8718 35 1 3.4395 -5.2408 -2.0279 36 1 3.7385 -6.7938 0.5271 37 1 4.8569 -5.4860 0.0723 38 1 4.2932 -4.2770 2.1625 39 1 3.1747 -5.5848 2.6173 40 1 5.0588 -7.1975 2.6097 41 1 6.1767 -5.8891 2.1548 42 1 5.5292 -4.7677 4.2110 43 1 6.3291 -7.5691 4.6578 44 1 7.4465 -6.2607 4.2022 45 1 8.2098 -7.3014 6.5685 46 1 10.2153 -8.1311 9.1042 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277372939.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:51 Heat of formation + Delta-G solvation = 26.895845 kcal Electronic energy + Delta-G solvation = -28115.839348 eV Core-core repulsion = 23852.388604 eV Total energy + Delta-G solvation = -4263.450743 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -47.31372 -40.38806 -38.33892 -37.33543 -35.75775 -35.48525 -35.14812 -33.89883 -32.69158 -31.25272 -30.77241 -29.81328 -27.37982 -26.37730 -25.12700 -23.57615 -23.05679 -21.98506 -21.44969 -21.02471 -19.47815 -19.22054 -18.90040 -17.88307 -17.59500 -16.88823 -16.12016 -15.73883 -15.54634 -15.06106 -14.71642 -14.66869 -14.46456 -14.32542 -14.00409 -13.95872 -13.83071 -13.70205 -13.35000 -13.22098 -12.71298 -12.57810 -12.42566 -12.32347 -11.97045 -11.89329 -11.65408 -11.58177 -11.49008 -11.39609 -11.07663 -10.99979 -10.89091 -10.79131 -10.73160 -10.34398 -10.22602 -9.66164 -9.52295 -8.46748 -8.06319 -7.96059 -6.42097 -3.82827 0.29649 0.86910 2.16436 2.46913 2.91380 2.97829 3.16247 3.26780 3.34321 3.41358 3.90463 4.00438 4.19166 4.22315 4.34401 4.49592 4.65499 4.66403 4.70286 4.98253 4.98494 5.08676 5.12168 5.18145 5.20025 5.25060 5.37186 5.39776 5.45889 5.50038 5.61645 5.63713 5.77344 5.80011 5.89992 5.97766 6.06533 6.14469 6.27435 6.82170 7.22074 7.47210 7.55286 7.65252 7.99108 8.06488 8.61092 9.17798 9.54122 10.05629 10.75758 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013720 B = 0.001780 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.357891 B =15729.719052 C =17102.237208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.062 3.938 3 N -0.356 5.356 4 O 0.345 5.655 5 N -0.319 5.319 6 C -0.046 4.046 7 C 0.609 3.391 8 O -0.511 6.511 9 N -0.702 5.702 10 C 0.142 3.858 11 H 0.097 0.903 12 C -0.164 4.164 13 C -0.126 4.126 14 C -0.119 4.119 15 C 0.059 3.941 16 N -0.671 5.671 17 C 0.051 3.949 18 C 0.440 3.560 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.408 0.592 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.025 0.975 42 H 0.348 0.652 43 H 0.086 0.914 44 H 0.043 0.957 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.065 8.266 -24.596 29.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 N -0.082 5.082 4 O 0.119 5.881 5 N -0.039 5.039 6 C -0.212 4.212 7 C 0.392 3.608 8 O -0.384 6.384 9 N -0.354 5.354 10 C 0.038 3.962 11 H 0.115 0.885 12 C -0.223 4.223 13 C -0.165 4.165 14 C -0.157 4.157 15 C -0.070 4.070 16 N -0.303 5.303 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.114 0.886 30 H 0.106 0.894 31 H 0.120 0.880 32 H 0.243 0.757 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.043 0.957 42 H 0.167 0.833 43 H 0.104 0.896 44 H 0.061 0.939 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.786 8.658 -23.946 28.955 hybrid contribution 1.297 -0.182 0.313 1.347 sum -12.489 8.476 -23.633 28.041 Atomic orbital electron populations 1.20365 0.82816 1.05245 1.04968 1.26273 1.00438 0.85065 0.98582 1.75092 0.91105 1.23947 1.18028 1.85084 1.23341 1.16506 1.63186 1.75365 1.23012 0.92990 1.12495 1.26084 0.88246 0.98474 1.08352 1.16412 0.85706 0.81475 0.77244 1.90828 1.18812 1.79477 1.49301 1.45967 1.09457 1.06590 1.73433 1.21185 0.99767 0.77864 0.97372 0.88517 1.22193 1.02278 1.02035 0.95767 1.21898 0.97584 1.00822 0.96151 1.21579 0.99882 1.00124 0.94099 1.21965 0.96461 1.00221 0.88372 1.60069 1.45011 1.12197 1.13017 1.21667 0.92327 0.99536 0.94660 1.19829 0.84132 0.85975 0.87488 1.90523 1.44710 1.36855 1.74647 1.41875 1.29035 1.38833 1.10360 1.19760 1.14864 1.23027 0.85152 0.87873 1.25272 0.95861 0.96348 1.00562 1.69624 1.18928 1.28532 1.37261 0.85792 0.78192 0.78458 0.81858 1.19213 1.20731 1.20770 0.88615 0.89362 0.87976 0.75670 0.90957 0.92009 0.92266 0.89544 0.91164 0.92106 0.90596 0.91072 0.95692 0.83285 0.89623 0.93944 0.77463 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 10.22 36.00 0.37 -0.08 16 2 C 0.06 0.54 7.79 -79.33 -0.62 -0.08 16 3 N -0.36 -3.33 12.22 33.76 0.41 -2.92 16 4 O 0.34 3.21 11.65 27.27 0.32 3.53 16 5 N -0.32 -2.98 12.13 33.50 0.41 -2.57 16 6 C -0.05 -0.43 7.56 -80.07 -0.61 -1.03 16 7 C 0.61 5.82 7.81 -12.13 -0.09 5.72 16 8 O -0.51 -5.84 15.62 5.37 0.08 -5.76 16 9 N -0.70 -5.38 4.53 -54.61 -0.25 -5.63 16 10 C 0.14 1.00 2.57 -67.93 -0.17 0.82 16 11 H 0.10 0.82 7.58 -51.93 -0.39 0.43 16 12 C -0.16 -0.99 9.48 37.16 0.35 -0.64 16 13 C -0.13 -0.82 4.75 -26.73 -0.13 -0.95 16 14 C -0.12 -1.12 5.36 -26.73 -0.14 -1.27 16 15 C 0.06 0.68 5.69 -3.82 -0.02 0.66 16 16 N -0.67 -10.86 6.13 -115.06 -0.70 -11.57 16 17 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 18 C 0.44 10.55 7.82 -10.99 -0.09 10.47 16 19 O -0.58 -16.13 15.78 5.55 0.09 -16.04 16 20 N -0.56 -14.46 5.29 -10.96 -0.06 -14.52 16 21 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 22 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.65 13.05 55.50 0.72 -23.93 16 25 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.10 0.61 7.31 -51.92 -0.38 0.23 16 32 H 0.41 2.71 8.46 -40.82 -0.35 2.36 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.60 7.75 -51.93 -0.40 0.20 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.35 5.87 8.43 -39.29 -0.33 5.54 16 43 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 44 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 46 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 398.28 15.07 6.00 6.00 Total: -1.00 -33.08 398.28 -6.18 -39.26 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -6.76 Total: 11.57 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -1.42 Total: 6.41 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: 0.53 Total: -61.14 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: 0.49 Total: -18.27 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.08 -6.18 -39.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277372939.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.160 kcal (2) G-P(sol) polarization free energy of solvation -33.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds