Wall clock time and date at job start Tue Mar 31 2020 22:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39668 * 127.32797 * 2 1 4 4 N 1.30862 * 107.86772 * 180.26863 * 3 2 1 5 5 N 1.28443 * 110.92156 * 359.77629 * 4 3 2 6 6 C 1.46503 * 125.18351 * 180.02562 * 5 4 3 7 7 C 1.36591 * 109.62557 * 359.97438 * 5 4 3 8 8 C 1.47162 * 126.88934 * 179.97438 * 7 5 4 9 9 O 1.21628 * 120.00096 * 99.43533 * 8 7 5 10 10 N 1.34779 * 119.99716 * 279.44068 * 8 7 5 11 11 C 1.46499 * 119.99618 * 174.84914 * 10 8 7 12 12 C 1.53002 * 109.47162 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.46917 * 64.99343 * 12 11 10 14 14 C 1.53001 * 109.47118 * 184.99840 * 12 11 10 15 15 O 1.42891 * 109.46943 * 55.00176 * 14 12 11 16 16 N 1.46898 * 109.46928 * 305.00088 * 12 11 10 17 17 C 1.46897 * 111.00106 * 155.00049 * 16 12 11 18 18 C 1.50704 * 109.47137 * 179.97438 * 17 16 12 19 19 O 1.21294 * 120.00024 * 359.97438 * 18 17 16 20 20 N 1.34772 * 120.00055 * 179.72069 * 18 17 16 21 21 C 1.37094 * 120.00045 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00257 * 0.02562 * 21 20 18 23 23 C 1.38948 * 120.00195 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00479 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 119.99994 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47317 * 90.00049 * 25 23 21 27 27 H 1.48500 * 109.47530 * 210.00006 * 25 23 21 28 28 H 1.48508 * 109.47181 * 330.00020 * 25 23 21 29 29 H 1.09000 * 109.47136 * 270.10416 * 1 2 3 30 30 H 1.08999 * 109.46757 * 30.10083 * 1 2 3 31 31 H 1.08999 * 109.47234 * 150.09884 * 1 2 3 32 32 H 1.08005 * 126.06070 * 0.06441 * 3 2 1 33 33 H 1.09002 * 109.46914 * 274.84148 * 6 5 4 34 34 H 1.08998 * 109.47570 * 34.84153 * 6 5 4 35 35 H 1.08999 * 109.46929 * 154.84981 * 6 5 4 36 36 H 0.96998 * 119.99994 * 354.84968 * 10 8 7 37 37 H 1.08994 * 109.47689 * 59.99758 * 11 10 8 38 38 H 1.09007 * 109.47221 * 299.99645 * 11 10 8 39 39 H 1.09005 * 109.46380 * 174.99862 * 14 12 11 40 40 H 1.08999 * 109.47040 * 294.99329 * 14 12 11 41 41 H 0.96703 * 113.99714 * 179.97438 * 15 14 12 42 42 H 1.00901 * 110.99695 * 278.95254 * 16 12 11 43 43 H 1.08994 * 109.47567 * 59.99621 * 17 16 12 44 44 H 1.09001 * 109.47077 * 299.99171 * 17 16 12 45 45 H 0.96995 * 120.00280 * 0.02562 * 20 18 17 46 46 H 0.96996 * 120.00401 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1106 0.0000 4 7 3.5878 0.6746 -0.0058 5 7 3.6206 -0.6094 -0.0049 6 6 4.8391 -1.4227 -0.0098 7 6 2.3461 -1.1008 0.0025 8 6 1.9454 -2.5168 0.0053 9 8 1.6195 -3.0545 1.0465 10 7 1.9396 -3.2178 -1.1458 11 6 1.6505 -4.6539 -1.1274 12 6 1.7077 -5.2040 -2.5539 13 1 2.7253 -5.1195 -2.9353 14 6 1.2846 -6.6743 -2.5509 15 8 -0.0030 -6.7981 -1.9437 16 7 0.7976 -4.4342 -3.4124 17 6 1.2224 -4.4940 -4.8173 18 6 0.2666 -3.6953 -5.6656 19 8 -0.6760 -3.1320 -5.1505 20 7 0.4622 -3.6026 -6.9958 21 6 -0.4076 -2.8764 -7.7676 22 1 -1.2493 -2.3782 -7.3095 23 6 -0.2063 -2.7812 -9.1391 24 7 -1.0397 -2.0847 -9.8788 25 14 1.2490 -3.6434 -9.9315 26 1 0.8512 -5.0158 -10.3359 27 1 1.6839 -2.8810 -11.1294 28 1 2.3691 -3.7190 -8.9593 29 1 -0.3633 0.0019 1.0277 30 1 -0.3633 0.8891 -0.5154 31 1 -0.3634 -0.8909 -0.5123 32 1 2.0452 2.1456 0.0010 33 1 5.1847 -1.5531 -1.0354 34 1 5.6122 -0.9225 0.5733 35 1 4.6268 -2.3977 0.4287 36 1 2.1269 -2.7715 -1.9864 37 1 0.6558 -4.8191 -0.7135 38 1 2.3900 -5.1655 -0.5112 39 1 1.2396 -7.0415 -3.5763 40 1 2.0103 -7.2601 -1.9867 41 1 -0.3353 -7.7055 -1.9078 42 1 -0.1540 -4.7534 -3.3084 43 1 1.2252 -5.5312 -5.1523 44 1 2.2260 -4.0791 -4.9114 45 1 1.2178 -4.0503 -7.4073 46 1 -0.8994 -2.0186 -10.8363 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278137074.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:40 Heat of formation + Delta-G solvation = -32.429578 kcal Electronic energy + Delta-G solvation = -29653.468963 eV Core-core repulsion = 25387.445677 eV Total energy + Delta-G solvation = -4266.023287 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.58636 -39.64324 -38.72218 -37.80207 -35.59176 -34.26321 -34.10192 -33.75092 -32.02965 -31.70704 -30.29201 -28.54275 -26.45178 -26.36104 -25.92033 -23.82659 -22.61552 -21.07683 -21.03442 -19.80063 -19.46678 -18.52989 -17.97524 -17.71106 -16.75572 -16.34711 -15.91600 -15.68765 -15.62176 -15.27415 -15.01199 -14.74807 -14.47062 -14.11174 -13.93015 -13.75200 -13.49927 -13.39938 -13.34083 -13.08429 -12.75721 -12.58528 -12.56844 -12.41451 -12.17564 -12.15658 -11.88294 -11.76569 -11.46396 -11.21986 -10.71459 -10.64833 -10.34069 -10.22324 -10.01730 -9.61975 -9.25651 -9.14490 -8.73451 -8.68082 -8.29408 -8.21757 -6.34967 -3.86702 1.55719 2.02350 2.59873 2.62937 2.97098 3.01444 3.10694 3.13660 3.67583 3.76987 4.05363 4.14261 4.27465 4.51056 4.56314 4.76103 4.78876 4.82657 4.91894 5.03814 5.04336 5.09128 5.10729 5.16353 5.28056 5.32984 5.47574 5.53251 5.55589 5.71655 5.74277 5.81999 5.90877 5.99337 6.09428 6.28092 6.50599 6.62474 6.92650 7.31588 7.39584 7.48839 7.53541 7.95054 8.02250 8.10150 8.54938 8.90899 9.37706 9.77385 10.78127 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009801 B = 0.003017 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2856.192355 B = 9277.033537 C =10769.700097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.148 4.148 3 C 0.005 3.995 4 N -0.285 5.285 5 N -0.277 5.277 6 C 0.089 3.911 7 C -0.033 4.033 8 C 0.593 3.407 9 O -0.529 6.529 10 N -0.698 5.698 11 C 0.136 3.864 12 C 0.075 3.925 13 H 0.094 0.906 14 C 0.047 3.953 15 O -0.564 6.564 16 N -0.659 5.659 17 C 0.045 3.955 18 C 0.448 3.552 19 O -0.561 6.561 20 N -0.590 5.590 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.270 1.270 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.186 0.814 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.412 0.588 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.381 0.619 42 H 0.366 0.634 43 H 0.044 0.956 44 H 0.086 0.914 45 H 0.370 0.630 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.739 -6.729 17.138 22.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.159 4.159 3 C -0.172 4.172 4 N -0.116 5.116 5 N -0.065 5.065 6 C -0.052 4.052 7 C -0.161 4.161 8 C 0.375 3.625 9 O -0.404 6.404 10 N -0.350 5.350 11 C 0.011 3.989 12 C -0.036 4.036 13 H 0.112 0.888 14 C -0.034 4.034 15 O -0.370 6.370 16 N -0.293 5.293 17 C -0.088 4.088 18 C 0.234 3.766 19 O -0.442 6.442 20 N -0.229 5.229 21 C -0.434 4.434 22 H 0.138 0.862 23 C -0.161 4.161 24 N -0.520 5.520 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.201 1.201 28 H -0.196 1.196 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.203 0.797 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.248 0.752 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.229 0.771 42 H 0.188 0.812 43 H 0.062 0.938 44 H 0.104 0.896 45 H 0.202 0.798 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.439 -5.170 18.176 23.188 hybrid contribution 0.261 -2.231 -1.723 2.830 sum 13.701 -7.400 16.453 22.653 Atomic orbital electron populations 1.20160 0.88152 1.03304 1.02212 1.20742 0.97068 0.90628 1.07471 1.23458 0.87689 0.99995 1.06084 1.73110 1.24540 0.93160 1.20766 1.45458 1.05335 1.03752 1.51998 1.22131 0.84014 0.94487 1.04532 1.21328 0.85986 0.94780 1.14052 1.16967 0.78121 0.83324 0.84088 1.90833 1.47767 1.69767 1.32063 1.45832 1.69992 1.09817 1.09356 1.21293 1.02586 0.79506 0.95477 1.21989 0.97885 0.89720 0.94052 0.88773 1.22824 0.85654 0.97745 0.97131 1.86498 1.34153 1.33381 1.82939 1.60125 1.07304 1.57039 1.04876 1.21788 0.99457 0.98588 0.88932 1.19647 0.88162 0.86310 0.82499 1.90592 1.32555 1.49078 1.71977 1.42197 1.26550 1.47587 1.06608 1.19431 1.07737 1.27059 0.89185 0.86249 1.25040 0.97706 0.97360 0.96023 1.69618 1.36336 1.39622 1.06410 0.86676 0.82388 0.80276 0.80024 1.19699 1.20144 1.19567 0.91270 0.90799 0.91343 0.79706 0.89540 0.88474 0.89136 0.75158 0.89772 0.91393 0.92980 0.93029 0.77127 0.81220 0.93768 0.89587 0.79784 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 10.28 36.01 0.37 -0.59 16 2 C -0.15 -1.98 6.30 -104.02 -0.65 -2.63 16 3 C 0.01 0.07 12.00 -17.43 -0.21 -0.14 16 4 N -0.29 -3.74 11.90 30.59 0.36 -3.38 16 5 N -0.28 -3.34 3.75 -63.88 -0.24 -3.58 16 6 C 0.09 0.68 11.21 59.85 0.67 1.35 16 7 C -0.03 -0.45 6.71 -82.06 -0.55 -1.00 16 8 C 0.59 8.18 6.77 -12.64 -0.09 8.09 16 9 O -0.53 -8.86 17.12 5.25 0.09 -8.77 16 10 N -0.70 -8.27 5.38 -61.47 -0.33 -8.60 16 11 C 0.14 1.46 5.26 -4.04 -0.02 1.44 16 12 C 0.07 0.72 2.57 -67.71 -0.17 0.55 16 13 H 0.09 0.73 7.80 -51.93 -0.40 0.32 16 14 C 0.05 0.38 6.72 37.16 0.25 0.63 16 15 O -0.56 -5.26 12.05 -35.23 -0.42 -5.69 16 16 N -0.66 -8.99 5.32 -107.99 -0.57 -9.57 16 17 C 0.05 0.66 5.96 -4.98 -0.03 0.63 16 18 C 0.45 9.63 7.82 -10.99 -0.09 9.55 16 19 O -0.56 -14.56 15.78 5.55 0.09 -14.47 16 20 N -0.59 -13.48 5.09 -10.96 -0.06 -13.54 16 21 C -0.31 -8.46 10.16 -14.94 -0.15 -8.61 16 22 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -25.37 13.96 55.50 0.77 -24.60 16 25 Si 0.88 18.84 27.74 -169.99 -4.71 14.13 16 26 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 27 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 28 H -0.27 -5.22 6.52 56.52 0.37 -4.85 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 32 H 0.19 1.70 8.06 -52.48 -0.42 1.27 16 33 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.62 7.66 -51.93 -0.40 0.22 16 36 H 0.41 4.90 8.13 -40.82 -0.33 4.57 16 37 H 0.08 1.11 7.39 -51.93 -0.38 0.73 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.41 7.35 -51.93 -0.38 0.03 16 40 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.38 1.95 9.12 45.56 0.42 2.37 16 42 H 0.37 5.80 7.64 -39.29 -0.30 5.50 16 43 H 0.04 0.55 7.36 -51.93 -0.38 0.17 16 44 H 0.09 1.07 8.06 -51.93 -0.42 0.66 16 45 H 0.37 7.34 5.76 -40.82 -0.24 7.11 16 46 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 393.01 15.07 5.92 5.92 Total: -1.00 -37.08 393.01 -5.62 -42.70 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: -5.75 Total: 19.16 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: -0.77 Total: 10.28 kcal Atomic # 7 Polarization: -63.20 SS G_CDS: -0.06 Total: -63.26 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.25 Total: -28.93 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -4.71 Total: 14.13 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.08 -5.62 -42.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278137074.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.275 kcal (2) G-P(sol) polarization free energy of solvation -37.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds