Wall clock time and date at job start Tue Mar 31 2020 22:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39668 * 127.32797 * 2 1 4 4 N 1.30862 * 107.86772 * 180.26863 * 3 2 1 5 5 N 1.28443 * 110.92156 * 359.77629 * 4 3 2 6 6 C 1.46503 * 125.18351 * 180.02562 * 5 4 3 7 7 C 1.36591 * 109.62557 * 359.97438 * 5 4 3 8 8 C 1.47162 * 126.88934 * 179.97438 * 7 5 4 9 9 O 1.21628 * 120.00096 * 99.43533 * 8 7 5 10 10 N 1.34779 * 119.99716 * 279.44068 * 8 7 5 11 11 C 1.46499 * 119.99618 * 174.84914 * 10 8 7 12 12 C 1.53002 * 109.47162 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.46917 * 64.99343 * 12 11 10 14 14 C 1.53001 * 109.47118 * 184.99840 * 12 11 10 15 15 O 1.42891 * 109.46943 * 55.00176 * 14 12 11 16 16 N 1.46898 * 109.46928 * 305.00088 * 12 11 10 17 17 C 1.46897 * 111.00106 * 155.00049 * 16 12 11 18 18 C 1.50704 * 109.47137 * 179.97438 * 17 16 12 19 19 O 1.21294 * 120.00024 * 359.97438 * 18 17 16 20 20 N 1.34772 * 120.00055 * 179.72069 * 18 17 16 21 21 C 1.37094 * 120.00045 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00257 * 0.02562 * 21 20 18 23 23 C 1.38948 * 120.00195 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00479 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 119.99994 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47317 * 90.00049 * 25 23 21 27 27 H 1.48500 * 109.47530 * 210.00006 * 25 23 21 28 28 H 1.48508 * 109.47181 * 330.00020 * 25 23 21 29 29 H 1.09000 * 109.47136 * 270.10416 * 1 2 3 30 30 H 1.08999 * 109.46757 * 30.10083 * 1 2 3 31 31 H 1.08999 * 109.47234 * 150.09884 * 1 2 3 32 32 H 1.08005 * 126.06070 * 0.06441 * 3 2 1 33 33 H 1.09002 * 109.46914 * 274.84148 * 6 5 4 34 34 H 1.08998 * 109.47570 * 34.84153 * 6 5 4 35 35 H 1.08999 * 109.46929 * 154.84981 * 6 5 4 36 36 H 0.96998 * 119.99994 * 354.84968 * 10 8 7 37 37 H 1.08994 * 109.47689 * 59.99758 * 11 10 8 38 38 H 1.09007 * 109.47221 * 299.99645 * 11 10 8 39 39 H 1.09005 * 109.46380 * 174.99862 * 14 12 11 40 40 H 1.08999 * 109.47040 * 294.99329 * 14 12 11 41 41 H 0.96703 * 113.99714 * 179.97438 * 15 14 12 42 42 H 1.00901 * 110.99695 * 278.95254 * 16 12 11 43 43 H 1.08994 * 109.47567 * 59.99621 * 17 16 12 44 44 H 1.09001 * 109.47077 * 299.99171 * 17 16 12 45 45 H 0.96995 * 120.00280 * 0.02562 * 20 18 17 46 46 H 0.96996 * 120.00401 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1106 0.0000 4 7 3.5878 0.6746 -0.0058 5 7 3.6206 -0.6094 -0.0049 6 6 4.8391 -1.4227 -0.0098 7 6 2.3461 -1.1008 0.0025 8 6 1.9454 -2.5168 0.0053 9 8 1.6195 -3.0545 1.0465 10 7 1.9396 -3.2178 -1.1458 11 6 1.6505 -4.6539 -1.1274 12 6 1.7077 -5.2040 -2.5539 13 1 2.7253 -5.1195 -2.9353 14 6 1.2846 -6.6743 -2.5509 15 8 -0.0030 -6.7981 -1.9437 16 7 0.7976 -4.4342 -3.4124 17 6 1.2224 -4.4940 -4.8173 18 6 0.2666 -3.6953 -5.6656 19 8 -0.6760 -3.1320 -5.1505 20 7 0.4622 -3.6026 -6.9958 21 6 -0.4076 -2.8764 -7.7676 22 1 -1.2493 -2.3782 -7.3095 23 6 -0.2063 -2.7812 -9.1391 24 7 -1.0397 -2.0847 -9.8788 25 14 1.2490 -3.6434 -9.9315 26 1 0.8512 -5.0158 -10.3359 27 1 1.6839 -2.8810 -11.1294 28 1 2.3691 -3.7190 -8.9593 29 1 -0.3633 0.0019 1.0277 30 1 -0.3633 0.8891 -0.5154 31 1 -0.3634 -0.8909 -0.5123 32 1 2.0452 2.1456 0.0010 33 1 5.1847 -1.5531 -1.0354 34 1 5.6122 -0.9225 0.5733 35 1 4.6268 -2.3977 0.4287 36 1 2.1269 -2.7715 -1.9864 37 1 0.6558 -4.8191 -0.7135 38 1 2.3900 -5.1655 -0.5112 39 1 1.2396 -7.0415 -3.5763 40 1 2.0103 -7.2601 -1.9867 41 1 -0.3353 -7.7055 -1.9078 42 1 -0.1540 -4.7534 -3.3084 43 1 1.2252 -5.5312 -5.1523 44 1 2.2260 -4.0791 -4.9114 45 1 1.2178 -4.0503 -7.4073 46 1 -0.8994 -2.0186 -10.8363 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278137074.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:39 Heat of formation + Delta-G solvation = -67.046903 kcal Electronic energy + Delta-G solvation = -29654.970083 eV Core-core repulsion = 25387.445677 eV Total energy + Delta-G solvation = -4267.524406 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.51758 -40.70800 -40.23946 -38.84713 -36.47041 -35.98524 -35.05066 -34.94257 -33.72787 -32.97039 -31.29069 -29.42497 -27.95109 -27.17087 -26.74287 -25.44874 -23.58596 -21.94041 -21.91523 -21.28459 -20.75409 -20.29838 -18.96258 -18.44529 -17.89247 -17.51099 -16.99586 -16.83767 -16.74849 -16.54582 -16.23960 -15.79730 -15.65201 -15.22930 -15.15257 -14.79610 -14.58357 -14.36404 -14.30507 -14.24185 -14.21117 -13.96655 -13.51872 -13.36209 -13.34051 -13.10580 -13.02198 -12.92502 -12.60356 -12.39945 -12.27927 -11.97070 -11.70692 -11.49503 -11.34942 -10.90275 -10.42061 -10.23111 -10.19947 -10.13688 -9.68930 -9.33774 -8.39649 -6.00729 0.58163 1.07198 1.30386 1.36649 1.45698 1.63998 1.68333 1.99152 2.22118 2.24365 2.69541 3.17035 3.24578 3.50159 3.59537 3.63705 3.80458 4.05640 4.11371 4.18915 4.19697 4.26939 4.35673 4.40457 4.42608 4.52374 4.56135 4.59350 4.62936 4.68539 4.77974 4.78925 4.99421 5.05882 5.12033 5.31009 5.54253 5.56195 5.76013 5.92103 6.05359 6.32256 6.37194 6.61545 6.90669 6.92359 6.98742 7.01977 7.42236 8.00129 8.78221 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009801 B = 0.003017 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2856.192355 B = 9277.033537 C =10769.700097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.170 4.170 3 C -0.001 4.001 4 N -0.298 5.298 5 N -0.274 5.274 6 C 0.078 3.922 7 C -0.051 4.051 8 C 0.597 3.403 9 O -0.565 6.565 10 N -0.687 5.687 11 C 0.137 3.863 12 C 0.079 3.921 13 H 0.127 0.873 14 C 0.048 3.952 15 O -0.591 6.591 16 N -0.678 5.678 17 C 0.061 3.939 18 C 0.447 3.553 19 O -0.614 6.614 20 N -0.591 5.591 21 C -0.328 4.328 22 H 0.052 0.948 23 C -0.017 4.017 24 N -0.937 5.937 25 Si 0.966 3.034 26 H -0.257 1.257 27 H -0.278 1.278 28 H -0.227 1.227 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.211 0.789 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.414 0.586 37 H 0.055 0.945 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.397 0.603 42 H 0.350 0.650 43 H 0.080 0.920 44 H 0.122 0.878 45 H 0.390 0.610 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.746 -9.005 16.926 25.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.181 4.181 3 C -0.177 4.177 4 N -0.129 5.129 5 N -0.063 5.063 6 C -0.061 4.061 7 C -0.179 4.179 8 C 0.380 3.620 9 O -0.443 6.443 10 N -0.337 5.337 11 C 0.014 3.986 12 C -0.031 4.031 13 H 0.145 0.855 14 C -0.032 4.032 15 O -0.400 6.400 16 N -0.310 5.310 17 C -0.071 4.071 18 C 0.235 3.765 19 O -0.498 6.498 20 N -0.233 5.233 21 C -0.457 4.457 22 H 0.070 0.930 23 C -0.215 4.215 24 N -0.578 5.578 25 Si 0.786 3.214 26 H -0.182 1.182 27 H -0.204 1.204 28 H -0.150 1.150 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.227 0.773 33 H 0.124 0.876 34 H 0.131 0.869 35 H 0.116 0.884 36 H 0.250 0.750 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.247 0.753 42 H 0.170 0.830 43 H 0.097 0.903 44 H 0.139 0.861 45 H 0.226 0.774 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 17.490 -7.484 17.971 26.170 hybrid contribution -1.091 -1.486 -1.551 2.409 sum 16.399 -8.970 16.420 24.879 Atomic orbital electron populations 1.20139 0.87876 1.02950 1.02522 1.21031 0.97650 0.91243 1.08151 1.23894 0.87293 1.00992 1.05550 1.73093 1.24862 0.93740 1.21247 1.45845 1.05904 1.03678 1.50843 1.22501 0.82886 0.94468 1.06250 1.21414 0.87005 0.94677 1.14846 1.17008 0.77590 0.83409 0.84007 1.90809 1.49673 1.70539 1.33312 1.45817 1.68780 1.10320 1.08752 1.21364 1.01590 0.78896 0.96800 1.22124 0.98494 0.90309 0.92190 0.85542 1.22861 0.85739 0.96569 0.98019 1.86471 1.35134 1.35149 1.83202 1.60077 1.07191 1.58836 1.04936 1.21720 0.98301 0.99083 0.87969 1.21074 0.88069 0.84993 0.82380 1.90576 1.35203 1.51036 1.73017 1.42010 1.26591 1.47715 1.06967 1.18988 1.07720 1.28629 0.90378 0.92951 1.26145 1.01628 0.97784 0.95979 1.69814 1.39232 1.41657 1.07053 0.85351 0.78240 0.78754 0.79050 1.18178 1.20353 1.15037 0.90652 0.89362 0.93396 0.77272 0.87555 0.86920 0.88418 0.74976 0.92667 0.89365 0.92203 0.90248 0.75270 0.83025 0.90252 0.86061 0.77444 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.90 10.28 71.24 0.73 -1.17 16 2 C -0.17 -4.54 6.30 -19.48 -0.12 -4.67 16 3 C 0.00 -0.02 12.00 85.18 1.02 1.01 16 4 N -0.30 -7.51 11.90 -57.14 -0.68 -8.19 16 5 N -0.27 -6.31 3.75 -356.01 -1.33 -7.64 16 6 C 0.08 1.03 11.21 127.77 1.43 2.46 16 7 C -0.05 -1.36 6.71 40.79 0.27 -1.08 16 8 C 0.60 16.36 6.77 86.59 0.59 16.95 16 9 O -0.57 -19.13 17.12 -4.12 -0.07 -19.20 16 10 N -0.69 -15.49 5.38 -466.62 -2.51 -18.00 16 11 C 0.14 2.71 5.26 86.38 0.45 3.17 16 12 C 0.08 1.25 2.57 44.92 0.12 1.36 16 13 H 0.13 1.24 7.80 -2.39 -0.02 1.22 16 14 C 0.05 0.59 6.72 71.98 0.48 1.08 16 15 O -0.59 -10.01 12.05 -148.98 -1.80 -11.80 16 16 N -0.68 -17.08 5.32 -495.58 -2.63 -19.71 16 17 C 0.06 1.56 5.96 85.56 0.51 2.07 16 18 C 0.45 18.91 7.82 87.66 0.69 19.60 16 19 O -0.61 -33.11 15.78 -3.07 -0.05 -33.16 16 20 N -0.59 -26.46 5.09 -306.99 -1.56 -28.03 16 21 C -0.33 -18.83 10.16 84.04 0.85 -17.98 16 22 H 0.05 3.63 7.39 -2.91 -0.02 3.61 16 23 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 24 N -0.94 -56.06 13.96 21.66 0.30 -55.76 16 25 Si 0.97 37.40 27.74 68.60 1.90 39.31 16 26 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 27 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 28 H -0.23 -7.17 6.52 99.48 0.65 -6.52 16 29 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.09 1.84 8.14 -2.39 -0.02 1.83 16 31 H 0.05 1.35 8.07 -2.39 -0.02 1.33 16 32 H 0.21 3.61 8.06 -2.91 -0.02 3.58 16 33 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.10 1.15 7.66 -2.39 -0.02 1.13 16 36 H 0.41 9.21 8.13 -92.71 -0.75 8.46 16 37 H 0.05 1.45 7.39 -2.39 -0.02 1.43 16 38 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.06 0.67 7.35 -2.38 -0.02 0.66 16 40 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.40 3.38 9.12 -74.06 -0.68 2.70 16 42 H 0.35 10.89 7.64 -89.69 -0.69 10.21 16 43 H 0.08 1.55 7.36 -2.39 -0.02 1.54 16 44 H 0.12 2.34 8.06 -2.39 -0.02 2.32 16 45 H 0.39 14.10 5.76 -92.71 -0.53 13.57 16 46 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -88.86 393.01 -2.58 -91.45 By element: Atomic # 1 Polarization: 50.05 SS G_CDS: -1.65 Total: 48.40 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: 7.49 Total: 22.34 kcal Atomic # 7 Polarization: -128.91 SS G_CDS: -8.42 Total: -137.33 kcal Atomic # 8 Polarization: -62.25 SS G_CDS: -1.91 Total: -64.17 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 1.90 Total: 39.31 kcal Total: -88.86 -2.58 -91.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278137074.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.399 kcal (2) G-P(sol) polarization free energy of solvation -88.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds