Wall clock time and date at job start Tue Mar 31 2020 22:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39680 * 127.31692 * 2 1 4 4 N 1.30866 * 107.85934 * 180.26646 * 3 2 1 5 5 N 1.28447 * 110.92449 * 359.77203 * 4 3 2 6 6 C 1.46498 * 125.18694 * 180.02562 * 5 4 3 7 7 C 1.36594 * 109.62137 * 359.97438 * 5 4 3 8 8 C 1.47162 * 126.88522 * 179.97438 * 7 5 4 9 9 O 1.21630 * 119.99997 * 99.43471 * 8 7 5 10 10 N 1.34778 * 120.00044 * 279.43521 * 8 7 5 11 11 C 1.46503 * 119.99943 * 174.85044 * 10 8 7 12 12 C 1.53002 * 109.46986 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.46930 * 294.99750 * 12 11 10 14 14 C 1.53000 * 109.47005 * 174.99614 * 12 11 10 15 15 O 1.42892 * 109.47269 * 305.00282 * 14 12 11 16 16 N 1.46898 * 109.47101 * 55.00062 * 12 11 10 17 17 C 1.46908 * 110.99805 * 205.00104 * 16 12 11 18 18 C 1.50700 * 109.46879 * 179.97438 * 17 16 12 19 19 O 1.21298 * 120.00094 * 359.97438 * 18 17 16 20 20 N 1.34773 * 119.99769 * 179.97438 * 18 17 16 21 21 C 1.37104 * 120.00139 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99713 * 359.97438 * 21 20 18 23 23 C 1.38944 * 120.00220 * 179.97438 * 21 20 18 24 24 N 1.31414 * 120.00203 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99871 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46768 * 90.00301 * 25 23 21 27 27 H 1.48499 * 109.46933 * 209.99845 * 25 23 21 28 28 H 1.48495 * 109.47360 * 330.00024 * 25 23 21 29 29 H 1.08994 * 109.47804 * 270.10322 * 1 2 3 30 30 H 1.09005 * 109.47304 * 30.10820 * 1 2 3 31 31 H 1.08997 * 109.47136 * 150.10167 * 1 2 3 32 32 H 1.07996 * 126.07107 * 0.05754 * 3 2 1 33 33 H 1.09010 * 109.46926 * 274.84600 * 6 5 4 34 34 H 1.08994 * 109.47516 * 34.84765 * 6 5 4 35 35 H 1.09004 * 109.47155 * 154.85263 * 6 5 4 36 36 H 0.97002 * 119.99819 * 355.11946 * 10 8 7 37 37 H 1.08999 * 109.47191 * 299.99408 * 11 10 8 38 38 H 1.09002 * 109.47354 * 59.99934 * 11 10 8 39 39 H 1.09001 * 109.46887 * 65.00480 * 14 12 11 40 40 H 1.09003 * 109.46880 * 184.99872 * 14 12 11 41 41 H 0.96703 * 113.99958 * 179.97438 * 15 14 12 42 42 H 1.00903 * 111.00173 * 328.94859 * 16 12 11 43 43 H 1.09002 * 109.46820 * 299.99363 * 17 16 12 44 44 H 1.08999 * 109.47261 * 59.99709 * 17 16 12 45 45 H 0.96996 * 120.00520 * 359.97438 * 20 18 17 46 46 H 0.96995 * 120.00327 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3538 1.1109 0.0000 4 7 3.5877 0.6749 -0.0058 5 7 3.6206 -0.6091 -0.0048 6 6 4.8391 -1.4224 -0.0096 7 6 2.3462 -1.1006 0.0027 8 6 1.9456 -2.5166 0.0057 9 8 1.6197 -3.0543 1.0469 10 7 1.9397 -3.2178 -1.1454 11 6 1.6507 -4.6539 -1.1268 12 6 1.7066 -5.2038 -2.5535 13 1 0.9089 -4.7568 -3.1467 14 6 1.5286 -6.7231 -2.5218 15 8 2.5039 -7.2989 -1.6506 16 7 3.0063 -4.8756 -3.1542 17 6 2.9130 -4.8320 -4.6197 18 6 4.2621 -4.4926 -5.1991 19 8 5.2083 -4.3050 -4.4635 20 7 4.4174 -4.3975 -6.5344 21 6 5.6447 -4.0882 -7.0616 22 1 6.4869 -3.9204 -6.4067 23 6 5.8049 -3.9907 -8.4383 24 7 4.7800 -4.1944 -9.2352 25 14 7.4770 -3.5687 -9.1564 26 1 8.2383 -4.8190 -9.4062 27 1 7.2957 -2.8357 -10.4351 28 1 8.2260 -2.7159 -8.1989 29 1 -0.3634 0.0019 1.0276 30 1 -0.3634 0.8890 -0.5155 31 1 -0.3633 -0.8909 -0.5122 32 1 2.0450 2.1457 0.0009 33 1 5.1848 -1.5528 -1.0352 34 1 5.6122 -0.9221 0.5736 35 1 4.6269 -2.3974 0.4290 36 1 2.1308 -2.7723 -1.9856 37 1 2.3902 -5.1654 -0.5107 38 1 0.6560 -4.8191 -0.7128 39 1 0.5295 -6.9643 -2.1587 40 1 1.6567 -7.1249 -3.5269 41 1 2.4499 -8.2619 -1.5815 42 1 3.3644 -4.0059 -2.7887 43 1 2.5914 -5.8045 -4.9923 44 1 2.1895 -4.0722 -4.9152 45 1 3.6610 -4.5479 -7.1226 46 1 4.8918 -4.1260 -10.1963 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278137075.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:43 Heat of formation + Delta-G solvation = -34.177315 kcal Electronic energy + Delta-G solvation = -29696.788554 eV Core-core repulsion = 25430.689480 eV Total energy + Delta-G solvation = -4266.099074 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.66388 -39.82913 -38.55908 -37.58116 -35.65903 -34.23201 -34.14140 -33.70118 -32.10819 -31.30269 -30.26595 -28.60312 -26.42166 -26.37428 -25.93705 -24.05070 -22.74224 -21.10832 -20.71855 -20.06108 -19.37400 -18.22998 -17.92845 -17.55632 -16.84018 -16.45993 -15.94735 -15.77994 -15.54285 -15.27475 -14.69028 -14.62832 -14.43200 -14.08151 -13.92060 -13.78749 -13.56948 -13.51205 -13.41851 -13.27359 -12.79084 -12.61312 -12.57377 -12.35816 -12.28383 -11.89915 -11.67049 -11.53309 -11.16550 -11.07952 -10.80043 -10.43961 -10.38211 -10.27761 -9.99329 -9.56919 -9.38393 -9.31493 -8.84642 -8.54930 -8.20107 -8.02731 -6.47752 -3.88787 1.46391 1.92683 2.50919 2.56811 2.93734 3.13742 3.23017 3.28468 3.81566 3.91239 4.16909 4.24125 4.29294 4.36790 4.58595 4.85049 4.86765 4.94707 4.99756 5.09889 5.16695 5.18839 5.20194 5.28515 5.30371 5.43921 5.47888 5.48221 5.54402 5.63387 5.74701 5.82283 5.85020 5.89237 6.05590 6.17655 6.38237 6.57420 7.02518 7.07126 7.43529 7.49574 7.66999 7.79342 7.91509 7.99523 8.54082 9.11632 9.47033 9.97969 10.69835 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009648 B = 0.003012 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2901.473246 B = 9294.256585 C =11150.722739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.159 4.159 3 C 0.002 3.998 4 N -0.279 5.279 5 N -0.267 5.267 6 C 0.082 3.918 7 C -0.037 4.037 8 C 0.598 3.402 9 O -0.518 6.518 10 N -0.719 5.719 11 C 0.121 3.879 12 C 0.075 3.925 13 H 0.062 0.938 14 C 0.092 3.908 15 O -0.554 6.554 16 N -0.652 5.652 17 C 0.047 3.953 18 C 0.439 3.561 19 O -0.582 6.582 20 N -0.562 5.562 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.277 1.277 27 H -0.283 1.283 28 H -0.269 1.269 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.186 0.814 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.402 0.598 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.046 0.954 40 H 0.052 0.948 41 H 0.374 0.626 42 H 0.346 0.654 43 H 0.087 0.913 44 H 0.043 0.957 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.771 2.193 14.358 18.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.169 4.169 3 C -0.175 4.175 4 N -0.110 5.110 5 N -0.055 5.055 6 C -0.058 4.058 7 C -0.166 4.166 8 C 0.381 3.619 9 O -0.392 6.392 10 N -0.372 5.372 11 C -0.002 4.002 12 C -0.036 4.036 13 H 0.080 0.920 14 C 0.012 3.988 15 O -0.359 6.359 16 N -0.287 5.287 17 C -0.086 4.086 18 C 0.225 3.775 19 O -0.466 6.466 20 N -0.198 5.198 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.178 4.178 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.203 1.203 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.203 0.797 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.112 0.888 36 H 0.237 0.763 37 H 0.112 0.888 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.220 0.780 42 H 0.168 0.832 43 H 0.105 0.895 44 H 0.061 0.939 45 H 0.225 0.775 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.687 2.160 15.480 18.389 hybrid contribution -0.984 0.261 -1.650 1.939 sum -10.671 2.421 13.830 17.635 Atomic orbital electron populations 1.20108 0.88423 1.02537 1.02335 1.20671 0.96814 0.90715 1.08744 1.23442 0.87727 0.99886 1.06414 1.73168 1.24430 0.93248 1.20156 1.45598 1.05544 1.03727 1.50671 1.22300 0.83557 0.94356 1.05566 1.21288 0.86313 0.94525 1.14428 1.16939 0.77763 0.83408 0.83811 1.90849 1.46966 1.69791 1.31598 1.46092 1.71412 1.10296 1.09385 1.21585 1.02736 0.78631 0.97267 1.21901 0.92113 0.95407 0.94131 0.91999 1.22061 0.90482 0.92274 0.93938 1.86590 1.56999 1.24869 1.67397 1.60041 1.23278 1.41008 1.04409 1.21802 0.96962 1.01472 0.88317 1.19727 0.89623 0.84936 0.83237 1.90530 1.41529 1.55387 1.59146 1.41855 1.11984 1.61219 1.04766 1.19698 0.88334 1.44241 0.90702 0.87910 1.25262 0.99217 0.97366 0.96000 1.69605 1.30453 1.49597 1.04575 0.85859 0.81509 0.78670 0.78277 1.20344 1.20895 1.19398 0.91167 0.90938 0.92045 0.79747 0.88576 0.88224 0.88787 0.76269 0.88828 0.90523 0.93567 0.92934 0.78011 0.83219 0.89476 0.93860 0.77493 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.28 36.01 0.37 -0.31 16 2 C -0.16 -1.85 6.30 -104.02 -0.65 -2.50 16 3 C 0.00 0.03 12.00 -17.42 -0.21 -0.18 16 4 N -0.28 -3.73 11.90 30.59 0.36 -3.37 16 5 N -0.27 -3.43 3.75 -63.88 -0.24 -3.67 16 6 C 0.08 0.86 11.21 59.85 0.67 1.53 16 7 C -0.04 -0.48 6.71 -82.06 -0.55 -1.03 16 8 C 0.60 7.88 6.77 -12.64 -0.09 7.79 16 9 O -0.52 -8.34 17.12 5.25 0.09 -8.25 16 10 N -0.72 -8.09 4.99 -61.46 -0.31 -8.40 16 11 C 0.12 1.34 5.20 -4.04 -0.02 1.32 16 12 C 0.08 0.82 2.60 -67.71 -0.18 0.65 16 13 H 0.06 0.58 7.80 -51.93 -0.40 0.18 16 14 C 0.09 0.91 6.80 37.16 0.25 1.17 16 15 O -0.55 -6.33 12.64 -35.23 -0.45 -6.78 16 16 N -0.65 -9.66 5.87 -107.98 -0.63 -10.30 16 17 C 0.05 0.76 5.97 -4.97 -0.03 0.73 16 18 C 0.44 9.91 7.82 -10.99 -0.09 9.82 16 19 O -0.58 -15.21 15.78 5.54 0.09 -15.12 16 20 N -0.56 -13.74 5.29 -10.96 -0.06 -13.79 16 21 C -0.30 -8.18 9.68 -14.93 -0.14 -8.33 16 22 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 24 N -0.90 -23.98 13.05 55.50 0.72 -23.26 16 25 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.55 8.07 -51.93 -0.42 0.13 16 32 H 0.19 1.49 8.06 -52.49 -0.42 1.06 16 33 H 0.10 0.99 8.14 -51.92 -0.42 0.57 16 34 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.09 0.93 7.66 -51.93 -0.40 0.54 16 36 H 0.40 4.29 7.35 -40.82 -0.30 3.99 16 37 H 0.09 1.24 7.39 -51.93 -0.38 0.86 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.05 0.54 7.35 -51.93 -0.38 0.15 16 41 H 0.37 2.63 9.12 45.56 0.42 3.04 16 42 H 0.35 5.32 6.41 -39.29 -0.25 5.07 16 43 H 0.09 1.30 7.36 -51.93 -0.38 0.92 16 44 H 0.04 0.61 8.06 -51.93 -0.42 0.19 16 45 H 0.39 9.14 7.90 -40.82 -0.32 8.82 16 46 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 394.93 15.07 5.95 5.95 Total: -1.00 -35.67 394.93 -5.97 -41.64 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: -5.72 Total: 18.48 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: -0.76 Total: 11.18 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: -0.15 Total: -62.79 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.27 Total: -30.15 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.67 -5.97 -41.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278137075.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.463 kcal (2) G-P(sol) polarization free energy of solvation -35.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds