Wall clock time and date at job start Tue Mar 31 2020 22:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39680 * 127.31692 * 2 1 4 4 N 1.30866 * 107.85934 * 180.26646 * 3 2 1 5 5 N 1.28447 * 110.92449 * 359.77203 * 4 3 2 6 6 C 1.46498 * 125.18694 * 180.02562 * 5 4 3 7 7 C 1.36594 * 109.62137 * 359.97438 * 5 4 3 8 8 C 1.47162 * 126.88522 * 179.97438 * 7 5 4 9 9 O 1.21630 * 119.99997 * 99.43471 * 8 7 5 10 10 N 1.34778 * 120.00044 * 279.43521 * 8 7 5 11 11 C 1.46503 * 119.99943 * 174.85044 * 10 8 7 12 12 C 1.53002 * 109.46986 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.46930 * 294.99750 * 12 11 10 14 14 C 1.53000 * 109.47005 * 174.99614 * 12 11 10 15 15 O 1.42892 * 109.47269 * 305.00282 * 14 12 11 16 16 N 1.46898 * 109.47101 * 55.00062 * 12 11 10 17 17 C 1.46908 * 110.99805 * 205.00104 * 16 12 11 18 18 C 1.50700 * 109.46879 * 179.97438 * 17 16 12 19 19 O 1.21298 * 120.00094 * 359.97438 * 18 17 16 20 20 N 1.34773 * 119.99769 * 179.97438 * 18 17 16 21 21 C 1.37104 * 120.00139 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99713 * 359.97438 * 21 20 18 23 23 C 1.38944 * 120.00220 * 179.97438 * 21 20 18 24 24 N 1.31414 * 120.00203 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99871 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46768 * 90.00301 * 25 23 21 27 27 H 1.48499 * 109.46933 * 209.99845 * 25 23 21 28 28 H 1.48495 * 109.47360 * 330.00024 * 25 23 21 29 29 H 1.08994 * 109.47804 * 270.10322 * 1 2 3 30 30 H 1.09005 * 109.47304 * 30.10820 * 1 2 3 31 31 H 1.08997 * 109.47136 * 150.10167 * 1 2 3 32 32 H 1.07996 * 126.07107 * 0.05754 * 3 2 1 33 33 H 1.09010 * 109.46926 * 274.84600 * 6 5 4 34 34 H 1.08994 * 109.47516 * 34.84765 * 6 5 4 35 35 H 1.09004 * 109.47155 * 154.85263 * 6 5 4 36 36 H 0.97002 * 119.99819 * 355.11946 * 10 8 7 37 37 H 1.08999 * 109.47191 * 299.99408 * 11 10 8 38 38 H 1.09002 * 109.47354 * 59.99934 * 11 10 8 39 39 H 1.09001 * 109.46887 * 65.00480 * 14 12 11 40 40 H 1.09003 * 109.46880 * 184.99872 * 14 12 11 41 41 H 0.96703 * 113.99958 * 179.97438 * 15 14 12 42 42 H 1.00903 * 111.00173 * 328.94859 * 16 12 11 43 43 H 1.09002 * 109.46820 * 299.99363 * 17 16 12 44 44 H 1.08999 * 109.47261 * 59.99709 * 17 16 12 45 45 H 0.96996 * 120.00520 * 359.97438 * 20 18 17 46 46 H 0.96995 * 120.00327 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3538 1.1109 0.0000 4 7 3.5877 0.6749 -0.0058 5 7 3.6206 -0.6091 -0.0048 6 6 4.8391 -1.4224 -0.0096 7 6 2.3462 -1.1006 0.0027 8 6 1.9456 -2.5166 0.0057 9 8 1.6197 -3.0543 1.0469 10 7 1.9397 -3.2178 -1.1454 11 6 1.6507 -4.6539 -1.1268 12 6 1.7066 -5.2038 -2.5535 13 1 0.9089 -4.7568 -3.1467 14 6 1.5286 -6.7231 -2.5218 15 8 2.5039 -7.2989 -1.6506 16 7 3.0063 -4.8756 -3.1542 17 6 2.9130 -4.8320 -4.6197 18 6 4.2621 -4.4926 -5.1991 19 8 5.2083 -4.3050 -4.4635 20 7 4.4174 -4.3975 -6.5344 21 6 5.6447 -4.0882 -7.0616 22 1 6.4869 -3.9204 -6.4067 23 6 5.8049 -3.9907 -8.4383 24 7 4.7800 -4.1944 -9.2352 25 14 7.4770 -3.5687 -9.1564 26 1 8.2383 -4.8190 -9.4062 27 1 7.2957 -2.8357 -10.4351 28 1 8.2260 -2.7159 -8.1989 29 1 -0.3634 0.0019 1.0276 30 1 -0.3634 0.8890 -0.5155 31 1 -0.3633 -0.8909 -0.5122 32 1 2.0450 2.1457 0.0009 33 1 5.1848 -1.5528 -1.0352 34 1 5.6122 -0.9221 0.5736 35 1 4.6269 -2.3974 0.4290 36 1 2.1308 -2.7723 -1.9856 37 1 2.3902 -5.1654 -0.5107 38 1 0.6560 -4.8191 -0.7128 39 1 0.5295 -6.9643 -2.1587 40 1 1.6567 -7.1249 -3.5269 41 1 2.4499 -8.2619 -1.5815 42 1 3.3644 -4.0059 -2.7887 43 1 2.5914 -5.8045 -4.9923 44 1 2.1895 -4.0722 -4.9152 45 1 3.6610 -4.5479 -7.1226 46 1 4.8918 -4.1260 -10.1963 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278137075.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:42 Heat of formation + Delta-G solvation = -65.775418 kcal Electronic energy + Delta-G solvation = -29698.158751 eV Core-core repulsion = 25430.689480 eV Total energy + Delta-G solvation = -4267.469271 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.57616 -40.87414 -40.14691 -38.74383 -36.61238 -35.97995 -35.03882 -34.96638 -33.28137 -33.00418 -31.32942 -29.45528 -27.94356 -27.23739 -26.83130 -25.71782 -23.70139 -21.97965 -21.66485 -21.19608 -20.90561 -19.93424 -19.13510 -18.41037 -17.99447 -17.59401 -17.12864 -16.83723 -16.72753 -16.50995 -16.32067 -15.91391 -15.66100 -15.29912 -15.11708 -14.83943 -14.66523 -14.35399 -14.32121 -14.28857 -14.01654 -13.59099 -13.55573 -13.41978 -13.40434 -13.11864 -13.08880 -12.92584 -12.70966 -12.42142 -12.13565 -12.05083 -11.70682 -11.51194 -11.41863 -10.76129 -10.37165 -10.33732 -10.26325 -10.01503 -9.72629 -9.35797 -8.47492 -5.95687 0.51915 0.95813 1.36962 1.41418 1.53279 1.62685 1.64250 1.99863 2.05333 2.27853 2.81356 3.20264 3.38153 3.42614 3.47239 3.50510 3.75958 4.05422 4.11941 4.15008 4.17543 4.27817 4.36656 4.40168 4.44042 4.47476 4.53186 4.59123 4.61097 4.69890 4.78141 4.82539 4.95283 5.06450 5.10022 5.12441 5.40636 5.56826 5.69163 5.85234 6.06766 6.11079 6.27383 6.59700 6.79940 6.99864 7.07735 7.12587 7.56275 8.11639 8.69739 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009648 B = 0.003012 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2901.473246 B = 9294.256585 C =11150.722739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.161 4.161 3 C 0.001 3.999 4 N -0.305 5.305 5 N -0.277 5.277 6 C 0.080 3.920 7 C -0.059 4.059 8 C 0.604 3.396 9 O -0.553 6.553 10 N -0.707 5.707 11 C 0.128 3.872 12 C 0.077 3.923 13 H 0.089 0.911 14 C 0.089 3.911 15 O -0.582 6.582 16 N -0.670 5.670 17 C 0.062 3.938 18 C 0.437 3.563 19 O -0.622 6.622 20 N -0.572 5.572 21 C -0.333 4.333 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.989 3.011 26 H -0.272 1.272 27 H -0.271 1.271 28 H -0.274 1.274 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.216 0.784 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.406 0.594 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.052 0.948 41 H 0.390 0.610 42 H 0.340 0.660 43 H 0.106 0.894 44 H 0.073 0.927 45 H 0.397 0.603 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.407 2.430 13.871 19.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.172 4.172 3 C -0.176 4.176 4 N -0.135 5.135 5 N -0.065 5.065 6 C -0.060 4.060 7 C -0.187 4.187 8 C 0.388 3.612 9 O -0.429 6.429 10 N -0.359 5.359 11 C 0.005 3.995 12 C -0.032 4.032 13 H 0.107 0.893 14 C 0.010 3.990 15 O -0.389 6.389 16 N -0.305 5.305 17 C -0.070 4.070 18 C 0.224 3.776 19 O -0.509 6.509 20 N -0.209 5.209 21 C -0.462 4.462 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.813 3.187 26 H -0.198 1.198 27 H -0.196 1.196 28 H -0.199 1.199 29 H 0.093 0.907 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.233 0.767 33 H 0.110 0.890 34 H 0.132 0.868 35 H 0.112 0.888 36 H 0.242 0.758 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.096 0.904 40 H 0.070 0.930 41 H 0.239 0.761 42 H 0.160 0.840 43 H 0.124 0.876 44 H 0.091 0.909 45 H 0.231 0.769 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.353 2.365 14.965 18.932 hybrid contribution -0.502 0.174 -1.439 1.534 sum -11.855 2.539 13.526 18.165 Atomic orbital electron populations 1.20198 0.86505 1.03626 1.02922 1.21120 0.98176 0.90263 1.07610 1.24028 0.87057 1.01304 1.05168 1.73143 1.25674 0.93574 1.21152 1.45765 1.05925 1.03781 1.51039 1.22382 0.83558 0.94437 1.05600 1.21460 0.86876 0.94750 1.15625 1.16961 0.77138 0.83502 0.83635 1.90826 1.48821 1.70525 1.32745 1.46023 1.70399 1.10381 1.09080 1.21531 1.02721 0.78023 0.97237 1.22062 0.90902 0.96536 0.93724 0.89305 1.22189 0.91732 0.91180 0.93923 1.86547 1.57908 1.26636 1.67785 1.60038 1.25984 1.40877 1.03586 1.21659 0.93098 1.03197 0.89017 1.20873 0.91666 0.82657 0.82360 1.90503 1.43836 1.56567 1.59946 1.41910 1.11324 1.61984 1.05697 1.19633 0.89066 1.46342 0.91196 0.90455 1.25974 1.02522 0.96759 0.95806 1.69656 1.31773 1.49592 1.04957 0.84985 0.77545 0.78519 0.77661 1.19754 1.19551 1.19856 0.90747 0.88612 0.92175 0.76734 0.88961 0.86773 0.88816 0.75751 0.91131 0.89027 0.90373 0.93024 0.76081 0.83969 0.87578 0.90921 0.76945 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.18 10.28 71.24 0.73 -0.45 16 2 C -0.16 -3.56 6.30 -19.48 -0.12 -3.68 16 3 C 0.00 0.02 12.00 85.19 1.02 1.05 16 4 N -0.30 -8.02 11.90 -57.14 -0.68 -8.70 16 5 N -0.28 -7.15 3.75 -356.02 -1.33 -8.48 16 6 C 0.08 1.72 11.21 127.77 1.43 3.15 16 7 C -0.06 -1.51 6.71 40.79 0.27 -1.23 16 8 C 0.60 15.81 6.77 86.59 0.59 16.40 16 9 O -0.55 -17.86 17.12 -4.13 -0.07 -17.93 16 10 N -0.71 -15.37 4.99 -466.62 -2.33 -17.70 16 11 C 0.13 2.67 5.20 86.38 0.45 3.12 16 12 C 0.08 1.51 2.60 44.92 0.12 1.63 16 13 H 0.09 1.32 7.80 -2.39 -0.02 1.30 16 14 C 0.09 1.53 6.80 71.98 0.49 2.02 16 15 O -0.58 -12.48 12.64 -148.98 -1.88 -14.37 16 16 N -0.67 -18.96 5.87 -495.55 -2.91 -21.87 16 17 C 0.06 1.90 5.97 85.56 0.51 2.41 16 18 C 0.44 19.71 7.82 87.66 0.69 20.40 16 19 O -0.62 -33.22 15.78 -3.09 -0.05 -33.27 16 20 N -0.57 -28.16 5.29 -306.98 -1.62 -29.78 16 21 C -0.33 -18.47 9.68 84.04 0.81 -17.66 16 22 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 23 C -0.01 -0.56 5.50 84.92 0.47 -0.09 16 24 N -0.92 -48.40 13.05 21.66 0.28 -48.11 16 25 Si 0.99 42.29 29.55 68.60 2.03 44.31 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 27 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 28 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.06 0.96 8.07 -2.39 -0.02 0.94 16 32 H 0.22 2.97 8.06 -2.91 -0.02 2.94 16 33 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.11 2.03 8.14 -2.39 -0.02 2.02 16 35 H 0.09 1.97 7.66 -2.38 -0.02 1.95 16 36 H 0.41 8.29 7.35 -92.71 -0.68 7.61 16 37 H 0.07 1.85 7.39 -2.39 -0.02 1.83 16 38 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.05 0.91 7.35 -2.39 -0.02 0.89 16 41 H 0.39 4.96 9.12 -74.06 -0.68 4.28 16 42 H 0.34 10.28 6.41 -89.69 -0.57 9.70 16 43 H 0.11 2.89 7.36 -2.39 -0.02 2.87 16 44 H 0.07 1.82 8.06 -2.39 -0.02 1.81 16 45 H 0.40 18.42 7.90 -92.71 -0.73 17.69 16 46 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 Total: -1.00 -78.11 394.93 -2.71 -80.82 By element: Atomic # 1 Polarization: 49.63 SS G_CDS: -1.60 Total: 48.03 kcal Atomic # 6 Polarization: 19.60 SS G_CDS: 7.46 Total: 27.05 kcal Atomic # 7 Polarization: -126.05 SS G_CDS: -8.59 Total: -134.64 kcal Atomic # 8 Polarization: -63.57 SS G_CDS: -2.00 Total: -65.57 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Total: -78.11 -2.71 -80.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278137075.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.043 kcal (2) G-P(sol) polarization free energy of solvation -78.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds