Wall clock time and date at job start Tue Mar 31 2020 22:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47420 * 2 1 4 4 C 1.53004 * 109.47326 * 240.00170 * 2 1 3 5 5 C 1.53002 * 109.47282 * 120.00435 * 2 1 3 6 6 H 1.08999 * 109.47336 * 180.02562 * 5 2 1 7 7 C 1.52993 * 109.47169 * 59.99587 * 5 2 1 8 8 N 1.46905 * 109.47039 * 185.00340 * 7 5 2 9 9 C 1.46901 * 110.99870 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.46943 * 180.02562 * 9 8 7 11 11 O 1.21292 * 120.00024 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99767 * 180.02562 * 10 9 8 13 13 C 1.37102 * 120.00095 * 179.97438 * 12 10 9 14 14 H 1.08004 * 119.99386 * 359.97438 * 13 12 10 15 15 C 1.38941 * 120.00393 * 179.97438 * 13 12 10 16 16 N 1.31416 * 119.99786 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00292 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47100 * 90.00207 * 17 15 13 19 19 H 1.48501 * 109.47251 * 210.00227 * 17 15 13 20 20 H 1.48503 * 109.46881 * 330.00341 * 17 15 13 21 21 N 1.46503 * 109.46578 * 299.99831 * 5 2 1 22 22 C 1.34775 * 120.00077 * 274.99776 * 21 5 2 23 23 O 1.21508 * 119.99986 * 0.02562 * 22 21 5 24 24 C 1.48276 * 120.00158 * 180.02562 * 22 21 5 25 25 C 1.47496 * 128.71276 * 179.69854 * 24 22 21 26 26 N 1.30645 * 102.71385 * 179.85036 * 25 24 22 27 27 O 1.20838 * 109.62371 * 0.42992 * 26 25 24 28 28 N 1.20906 * 115.90202 * 359.69371 * 27 26 25 29 29 H 1.08998 * 109.46976 * 300.00050 * 1 2 3 30 30 H 1.09003 * 109.47448 * 59.99636 * 1 2 3 31 31 H 1.08996 * 109.47329 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47364 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.47274 * 300.00298 * 3 2 1 34 34 H 1.08998 * 109.47087 * 60.00018 * 3 2 1 35 35 H 1.09005 * 109.46825 * 300.00307 * 4 2 1 36 36 H 1.09003 * 109.46699 * 59.99736 * 4 2 1 37 37 H 1.08997 * 109.47606 * 180.02562 * 4 2 1 38 38 H 1.09001 * 109.47393 * 65.00621 * 7 5 2 39 39 H 1.08998 * 109.47408 * 305.00267 * 7 5 2 40 40 H 1.00901 * 110.99869 * 56.04956 * 8 7 5 41 41 H 1.09004 * 109.47031 * 299.99620 * 9 8 7 42 42 H 1.08995 * 109.47111 * 59.99900 * 9 8 7 43 43 H 0.96997 * 120.00713 * 359.97438 * 12 10 9 44 44 H 0.97001 * 119.99428 * 179.97438 * 16 15 13 45 45 H 0.97003 * 120.00365 * 94.99970 * 21 5 2 46 46 H 1.08001 * 128.63821 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 3.1300 -0.7210 1.2494 7 6 1.5299 -2.1638 1.2492 8 7 1.9186 -2.8206 2.5044 9 6 1.4451 -4.2108 2.5396 10 6 1.8611 -4.8503 3.8393 11 8 2.4904 -4.2110 4.6556 12 7 1.5346 -6.1328 4.0940 13 6 1.9135 -6.7148 5.2761 14 1 2.4739 -6.1456 6.0030 15 6 1.5765 -8.0369 5.5390 16 7 0.8951 -8.7297 4.6543 17 14 2.0933 -8.8301 7.1493 18 1 1.0340 -8.6177 8.1681 19 1 2.2952 -10.2865 6.9414 20 1 3.3616 -8.2165 7.6187 21 7 1.5516 -0.0307 2.4454 22 6 2.2284 1.0261 2.9369 23 8 3.2434 1.4063 2.3877 24 6 1.7345 1.7247 4.1479 25 6 2.3192 2.8846 4.8467 26 7 1.4824 3.0791 5.8309 27 8 0.6000 2.2549 5.7822 28 7 0.6676 1.4619 4.8721 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2073 -2.1392 37 1 3.1300 -0.7216 -1.2491 38 1 1.9645 -2.7029 0.4074 39 1 0.4436 -2.1651 1.1596 40 1 1.5817 -2.3032 3.3025 41 1 0.3582 -4.2266 2.4589 42 1 1.8795 -4.7637 1.7068 43 1 1.0317 -6.6442 3.4410 44 1 0.6602 -9.6528 4.8377 45 1 0.7411 -0.3340 2.8837 46 1 3.2149 3.4369 4.6038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279015795.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:27 Heat of formation + Delta-G solvation = 43.563217 kcal Electronic energy + Delta-G solvation = -29895.310257 eV Core-core repulsion = 25632.582265 eV Total energy + Delta-G solvation = -4262.727992 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -47.19150 -40.71595 -38.44016 -37.89380 -35.25823 -35.06540 -34.74562 -33.93523 -33.56575 -31.25407 -29.43413 -27.58296 -27.47616 -26.65266 -25.60792 -24.36828 -23.96739 -22.28648 -21.26019 -19.39136 -19.30858 -19.27436 -18.57464 -18.00376 -17.76831 -16.52549 -16.32736 -16.04641 -15.46272 -15.26775 -14.71486 -14.59463 -14.40237 -14.24723 -14.01055 -13.89903 -13.56729 -13.16150 -13.12902 -12.59533 -12.55182 -12.37033 -12.20869 -11.98194 -11.88575 -11.71012 -11.64096 -11.55759 -11.46838 -11.37241 -11.10634 -11.05651 -10.94040 -10.69724 -10.56220 -10.40715 -10.23864 -9.53207 -9.33220 -8.51080 -8.13812 -7.98634 -6.44006 -3.84858 0.47295 1.03952 2.34513 2.68658 3.12153 3.16546 3.20233 3.25474 3.31555 3.64049 3.87088 3.95265 4.21298 4.42575 4.48594 4.57530 4.65688 4.68734 4.91977 5.00440 5.03728 5.15550 5.21744 5.26062 5.39579 5.45675 5.49636 5.59892 5.65970 5.70699 5.72837 5.78760 5.85083 5.88744 5.96738 6.02441 6.18080 6.21711 6.24009 7.00977 7.07402 7.51159 7.53312 7.68759 8.03741 8.11503 8.58528 9.15653 9.51446 10.02754 10.73680 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010552 B = 0.002816 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.878439 B = 9940.765756 C =12001.489825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 C -0.133 4.133 4 C -0.142 4.142 5 C 0.159 3.841 6 H 0.104 0.896 7 C 0.045 3.955 8 N -0.667 5.667 9 C 0.050 3.950 10 C 0.439 3.561 11 O -0.583 6.583 12 N -0.562 5.562 13 C -0.300 4.300 14 H 0.103 0.897 15 C 0.023 3.977 16 N -0.902 5.902 17 Si 0.930 3.070 18 H -0.278 1.278 19 H -0.283 1.283 20 H -0.269 1.269 21 N -0.698 5.698 22 C 0.611 3.389 23 O -0.507 6.507 24 C -0.042 4.042 25 C 0.037 3.963 26 N -0.354 5.354 27 O 0.343 5.657 28 N -0.318 5.318 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.093 0.907 39 H 0.039 0.961 40 H 0.347 0.653 41 H 0.044 0.956 42 H 0.088 0.912 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.405 0.595 46 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.862 20.332 -10.630 23.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.081 4.081 3 C -0.190 4.190 4 C -0.200 4.200 5 C 0.055 3.945 6 H 0.122 0.878 7 C -0.084 4.084 8 N -0.300 5.300 9 C -0.082 4.082 10 C 0.225 3.775 11 O -0.467 6.467 12 N -0.199 5.199 13 C -0.429 4.429 14 H 0.121 0.879 15 C -0.179 4.179 16 N -0.543 5.543 17 Si 0.757 3.243 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.194 1.194 21 N -0.349 5.349 22 C 0.393 3.607 23 O -0.380 6.380 24 C -0.207 4.207 25 C -0.149 4.149 26 N -0.077 5.077 27 O 0.116 5.884 28 N -0.038 5.038 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.111 0.889 39 H 0.057 0.943 40 H 0.167 0.833 41 H 0.062 0.938 42 H 0.106 0.894 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.240 0.760 46 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -2.027 20.562 -9.936 22.927 hybrid contribution -0.751 -0.825 0.172 1.129 sum -2.778 19.737 -9.764 22.195 Atomic orbital electron populations 1.21953 0.94476 1.02064 1.01796 1.20962 0.95971 0.96425 0.94692 1.21906 1.01934 0.94319 1.00835 1.21899 1.01557 1.00296 0.96217 1.21261 1.01004 0.89833 0.82388 0.87756 1.22438 0.98371 0.92886 0.94737 1.60026 1.64385 1.02076 1.03523 1.21688 0.97755 0.89973 0.98793 1.19783 0.85692 0.83396 0.88670 1.90533 1.44052 1.63157 1.48944 1.41854 1.49463 1.09907 1.18683 1.19703 1.32898 0.95014 0.95307 0.87940 1.25258 0.96886 0.96417 0.99322 1.69613 1.38916 1.10566 1.35204 0.85859 0.79198 0.78017 0.81242 1.20396 1.20891 1.19381 1.45793 1.28726 1.30694 1.29714 1.16312 0.83525 0.80198 0.80637 1.90852 1.23496 1.65125 1.58499 1.26310 0.94074 0.99318 1.01037 1.27737 1.01450 0.95726 0.89941 1.75075 1.00074 1.11706 1.20880 1.85103 1.38563 1.27434 1.37259 1.75404 1.18212 1.11567 0.98589 0.92848 0.92500 0.92075 0.91533 0.93308 0.93185 0.92049 0.92333 0.92073 0.88887 0.94340 0.83346 0.93799 0.89391 0.77463 0.91853 0.75989 0.75640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 7.97 37.15 0.30 -0.81 16 2 C -0.08 -0.66 0.62 -154.51 -0.10 -0.76 16 3 C -0.13 -1.22 7.00 37.16 0.26 -0.96 16 4 C -0.14 -1.06 8.12 37.16 0.30 -0.76 16 5 C 0.16 1.62 1.84 -67.93 -0.12 1.50 16 6 H 0.10 1.29 7.58 -51.93 -0.39 0.89 16 7 C 0.05 0.49 4.58 -3.82 -0.02 0.47 16 8 N -0.67 -10.12 6.12 -115.06 -0.70 -10.82 16 9 C 0.05 0.85 6.17 -4.98 -0.03 0.82 16 10 C 0.44 10.23 7.82 -10.99 -0.09 10.14 16 11 O -0.58 -15.79 15.78 5.55 0.09 -15.70 16 12 N -0.56 -14.10 5.29 -10.96 -0.06 -14.16 16 13 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 14 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 15 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 16 N -0.90 -24.38 13.05 55.50 0.72 -23.65 16 17 Si 0.93 21.04 29.55 -169.99 -5.02 16.01 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 N -0.70 -7.25 3.48 -54.61 -0.19 -7.44 16 22 C 0.61 7.02 6.20 -12.13 -0.08 6.94 16 23 O -0.51 -6.68 14.16 5.36 0.08 -6.60 16 24 C -0.04 -0.44 7.56 -80.07 -0.61 -1.05 16 25 C 0.04 0.33 12.63 -14.29 -0.18 0.15 16 26 N -0.35 -3.54 12.22 30.72 0.38 -3.17 16 27 O 0.34 3.59 11.65 27.26 0.32 3.91 16 28 N -0.32 -3.47 12.13 33.50 0.41 -3.07 16 29 H 0.05 0.42 7.60 -51.93 -0.39 0.03 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.45 6.32 -51.93 -0.33 0.12 16 32 H 0.07 0.69 7.53 -51.93 -0.39 0.30 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.51 5.77 -51.93 -0.30 0.21 16 35 H 0.06 0.43 6.54 -51.93 -0.34 0.09 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.93 6.71 -51.93 -0.35 0.58 16 39 H 0.04 0.36 6.17 -51.93 -0.32 0.04 16 40 H 0.35 5.53 7.28 -39.29 -0.29 5.25 16 41 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 44 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 45 H 0.40 3.94 8.01 -40.82 -0.33 3.62 16 46 H 0.23 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 380.22 15.07 5.73 5.73 Total: -1.00 -32.15 380.22 -5.08 -37.23 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -6.22 Total: 14.01 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -0.60 Total: 7.71 kcal Atomic # 7 Polarization: -62.86 SS G_CDS: 0.55 Total: -62.30 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: 0.48 Total: -18.39 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.15 -5.08 -37.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279015795.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.796 kcal (2) G-P(sol) polarization free energy of solvation -32.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds