Wall clock time and date at job start Tue Mar 31 2020 22:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47420 * 2 1 4 4 C 1.53004 * 109.47326 * 240.00170 * 2 1 3 5 5 C 1.53002 * 109.47282 * 120.00435 * 2 1 3 6 6 H 1.08999 * 109.47336 * 180.02562 * 5 2 1 7 7 C 1.52993 * 109.47169 * 59.99587 * 5 2 1 8 8 N 1.46905 * 109.47039 * 185.00340 * 7 5 2 9 9 C 1.46901 * 110.99870 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.46943 * 180.02562 * 9 8 7 11 11 O 1.21292 * 120.00024 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99767 * 180.02562 * 10 9 8 13 13 C 1.37102 * 120.00095 * 179.97438 * 12 10 9 14 14 H 1.08004 * 119.99386 * 359.97438 * 13 12 10 15 15 C 1.38941 * 120.00393 * 179.97438 * 13 12 10 16 16 N 1.31416 * 119.99786 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00292 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47100 * 90.00207 * 17 15 13 19 19 H 1.48501 * 109.47251 * 210.00227 * 17 15 13 20 20 H 1.48503 * 109.46881 * 330.00341 * 17 15 13 21 21 N 1.46503 * 109.46578 * 299.99831 * 5 2 1 22 22 C 1.34775 * 120.00077 * 274.99776 * 21 5 2 23 23 O 1.21508 * 119.99986 * 0.02562 * 22 21 5 24 24 C 1.48276 * 120.00158 * 180.02562 * 22 21 5 25 25 C 1.47496 * 128.71276 * 179.69854 * 24 22 21 26 26 N 1.30645 * 102.71385 * 179.85036 * 25 24 22 27 27 O 1.20838 * 109.62371 * 0.42992 * 26 25 24 28 28 N 1.20906 * 115.90202 * 359.69371 * 27 26 25 29 29 H 1.08998 * 109.46976 * 300.00050 * 1 2 3 30 30 H 1.09003 * 109.47448 * 59.99636 * 1 2 3 31 31 H 1.08996 * 109.47329 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47364 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.47274 * 300.00298 * 3 2 1 34 34 H 1.08998 * 109.47087 * 60.00018 * 3 2 1 35 35 H 1.09005 * 109.46825 * 300.00307 * 4 2 1 36 36 H 1.09003 * 109.46699 * 59.99736 * 4 2 1 37 37 H 1.08997 * 109.47606 * 180.02562 * 4 2 1 38 38 H 1.09001 * 109.47393 * 65.00621 * 7 5 2 39 39 H 1.08998 * 109.47408 * 305.00267 * 7 5 2 40 40 H 1.00901 * 110.99869 * 56.04956 * 8 7 5 41 41 H 1.09004 * 109.47031 * 299.99620 * 9 8 7 42 42 H 1.08995 * 109.47111 * 59.99900 * 9 8 7 43 43 H 0.96997 * 120.00713 * 359.97438 * 12 10 9 44 44 H 0.97001 * 119.99428 * 179.97438 * 16 15 13 45 45 H 0.97003 * 120.00365 * 94.99970 * 21 5 2 46 46 H 1.08001 * 128.63821 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 3.1300 -0.7210 1.2494 7 6 1.5299 -2.1638 1.2492 8 7 1.9186 -2.8206 2.5044 9 6 1.4451 -4.2108 2.5396 10 6 1.8611 -4.8503 3.8393 11 8 2.4904 -4.2110 4.6556 12 7 1.5346 -6.1328 4.0940 13 6 1.9135 -6.7148 5.2761 14 1 2.4739 -6.1456 6.0030 15 6 1.5765 -8.0369 5.5390 16 7 0.8951 -8.7297 4.6543 17 14 2.0933 -8.8301 7.1493 18 1 1.0340 -8.6177 8.1681 19 1 2.2952 -10.2865 6.9414 20 1 3.3616 -8.2165 7.6187 21 7 1.5516 -0.0307 2.4454 22 6 2.2284 1.0261 2.9369 23 8 3.2434 1.4063 2.3877 24 6 1.7345 1.7247 4.1479 25 6 2.3192 2.8846 4.8467 26 7 1.4824 3.0791 5.8309 27 8 0.6000 2.2549 5.7822 28 7 0.6676 1.4619 4.8721 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2073 -2.1392 37 1 3.1300 -0.7216 -1.2491 38 1 1.9645 -2.7029 0.4074 39 1 0.4436 -2.1651 1.1596 40 1 1.5817 -2.3032 3.3025 41 1 0.3582 -4.2266 2.4589 42 1 1.8795 -4.7637 1.7068 43 1 1.0317 -6.6442 3.4410 44 1 0.6602 -9.6528 4.8377 45 1 0.7411 -0.3340 2.8837 46 1 3.2149 3.4369 4.6038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279015795.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:26 Heat of formation + Delta-G solvation = 18.888734 kcal Electronic energy + Delta-G solvation = -29896.380223 eV Core-core repulsion = 25632.582265 eV Total energy + Delta-G solvation = -4263.797958 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -47.98868 -41.58261 -40.14166 -38.89504 -36.44961 -35.94421 -35.73746 -35.54887 -34.53271 -33.26809 -30.52640 -28.22418 -28.14405 -27.98802 -26.74709 -25.60476 -25.08287 -23.23692 -22.12209 -21.13768 -20.11790 -20.06571 -19.95370 -19.35785 -18.73464 -17.84609 -17.33648 -16.98649 -16.93691 -16.42096 -16.04003 -15.96056 -15.53440 -15.27719 -15.24261 -14.94950 -14.66426 -14.31411 -14.07414 -13.92369 -13.52648 -13.38087 -13.18159 -13.07393 -13.01392 -12.88012 -12.73379 -12.61132 -12.44861 -12.42977 -12.30677 -12.17159 -12.12021 -11.87772 -11.70041 -11.51757 -11.46058 -11.41557 -10.38616 -10.14873 -10.02048 -9.33541 -8.47728 -5.96215 -0.37368 0.29049 1.36977 1.41148 1.50544 1.53546 1.80789 2.04841 2.27940 2.32395 2.43203 2.80820 2.90472 3.19853 3.45328 3.63567 3.71212 3.77280 3.87142 3.97806 4.16653 4.27084 4.34092 4.40796 4.47320 4.52637 4.59095 4.69417 4.76236 4.83205 4.90056 4.96001 5.05759 5.08171 5.18799 5.22769 5.35092 5.40082 5.48975 5.53049 5.84072 6.06724 6.15015 6.31332 6.59507 6.81684 7.12161 7.31134 7.55813 8.11503 8.69567 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010552 B = 0.002816 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.878439 B = 9940.765756 C =12001.489825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.072 4.072 3 C -0.128 4.128 4 C -0.141 4.141 5 C 0.163 3.837 6 H 0.081 0.919 7 C 0.050 3.950 8 N -0.685 5.685 9 C 0.065 3.935 10 C 0.435 3.565 11 O -0.626 6.626 12 N -0.572 5.572 13 C -0.334 4.334 14 H 0.076 0.924 15 C -0.011 4.011 16 N -0.919 5.919 17 Si 0.990 3.010 18 H -0.270 1.270 19 H -0.270 1.270 20 H -0.275 1.275 21 N -0.693 5.693 22 C 0.610 3.390 23 O -0.528 6.528 24 C -0.055 4.055 25 C 0.051 3.949 26 N -0.363 5.363 27 O 0.338 5.662 28 N -0.325 5.325 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.038 0.962 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.106 0.894 39 H 0.061 0.939 40 H 0.340 0.660 41 H 0.072 0.928 42 H 0.109 0.891 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.409 0.591 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.665 20.311 -11.785 23.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.199 4.199 5 C 0.059 3.941 6 H 0.099 0.901 7 C -0.079 4.079 8 N -0.318 5.318 9 C -0.067 4.067 10 C 0.223 3.777 11 O -0.513 6.513 12 N -0.209 5.209 13 C -0.464 4.464 14 H 0.094 0.906 15 C -0.211 4.211 16 N -0.560 5.560 17 Si 0.814 3.186 18 H -0.196 1.196 19 H -0.194 1.194 20 H -0.200 1.200 21 N -0.344 5.344 22 C 0.393 3.607 23 O -0.403 6.403 24 C -0.220 4.220 25 C -0.134 4.134 26 N -0.088 5.088 27 O 0.113 5.887 28 N -0.044 5.044 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.124 0.876 39 H 0.079 0.921 40 H 0.158 0.842 41 H 0.090 0.910 42 H 0.127 0.873 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.244 0.756 46 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -2.872 20.519 -11.129 23.519 hybrid contribution -0.478 -0.753 0.504 1.024 sum -3.351 19.767 -10.625 22.690 Atomic orbital electron populations 1.21932 0.93392 1.02629 1.02044 1.20905 0.96682 0.95660 0.94093 1.21839 1.00841 0.94990 1.00826 1.21903 1.01206 1.00779 0.95979 1.21226 0.99722 0.89985 0.83191 0.90106 1.22526 0.99807 0.92608 0.92918 1.60006 1.65211 1.01504 1.05039 1.21554 0.99417 0.90574 0.95130 1.20954 0.83907 0.82571 0.90288 1.90502 1.45658 1.64000 1.51090 1.41912 1.50003 1.10769 1.18200 1.19637 1.34443 0.95892 0.96440 0.90570 1.25994 0.96442 0.96288 1.02346 1.69664 1.38925 1.10984 1.36386 0.84967 0.78587 0.77492 0.77542 1.19589 1.19448 1.19974 1.45795 1.28613 1.30270 1.29732 1.16415 0.83300 0.80304 0.80721 1.90839 1.24389 1.65824 1.59217 1.26342 0.94479 1.00098 1.01093 1.28239 1.01651 0.94802 0.88751 1.75083 1.00380 1.11882 1.21456 1.85097 1.38869 1.27534 1.37182 1.75376 1.18472 1.11795 0.98766 0.93380 0.91547 0.91293 0.93154 0.92085 0.94334 0.91185 0.91211 0.92726 0.87575 0.92105 0.84151 0.91030 0.87303 0.76874 0.91264 0.75556 0.72770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 7.97 71.98 0.57 -1.24 16 2 C -0.07 -1.09 0.62 -52.18 -0.03 -1.12 16 3 C -0.13 -2.24 7.00 71.98 0.50 -1.74 16 4 C -0.14 -1.80 8.12 71.98 0.58 -1.21 16 5 C 0.16 3.16 1.84 44.99 0.08 3.24 16 6 H 0.08 1.99 7.58 -2.39 -0.02 1.97 16 7 C 0.05 0.96 4.58 86.30 0.40 1.36 16 8 N -0.68 -19.91 6.12 -517.93 -3.17 -23.08 16 9 C 0.07 2.08 6.17 85.56 0.53 2.61 16 10 C 0.44 20.32 7.82 87.66 0.69 21.00 16 11 O -0.63 -34.67 15.78 -3.07 -0.05 -34.71 16 12 N -0.57 -28.89 5.29 -306.99 -1.62 -30.51 16 13 C -0.33 -18.97 9.68 84.04 0.81 -18.15 16 14 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 15 C -0.01 -0.57 5.50 84.92 0.47 -0.11 16 16 N -0.92 -49.08 13.05 21.66 0.28 -48.79 16 17 Si 0.99 42.90 29.55 68.60 2.03 44.93 16 18 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 19 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 N -0.69 -14.09 3.48 -444.99 -1.55 -15.64 16 22 C 0.61 14.00 6.20 86.91 0.54 14.54 16 23 O -0.53 -14.03 14.16 -3.74 -0.05 -14.08 16 24 C -0.05 -1.15 7.56 44.29 0.34 -0.82 16 25 C 0.05 0.87 12.63 87.31 1.10 1.97 16 26 N -0.36 -7.05 12.22 -61.40 -0.75 -7.80 16 27 O 0.34 7.04 11.65 140.85 1.64 8.68 16 28 N -0.32 -7.07 12.13 -52.03 -0.63 -7.70 16 29 H 0.05 0.67 7.60 -2.39 -0.02 0.65 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.78 6.32 -2.39 -0.02 0.76 16 32 H 0.05 1.04 7.53 -2.39 -0.02 1.03 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 34 H 0.04 0.76 5.77 -2.39 -0.01 0.75 16 35 H 0.07 0.78 6.54 -2.38 -0.02 0.76 16 36 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.11 1.80 6.71 -2.39 -0.02 1.79 16 39 H 0.06 0.94 6.17 -2.39 -0.01 0.93 16 40 H 0.34 10.67 7.28 -89.69 -0.65 10.01 16 41 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 43 H 0.40 18.89 7.90 -92.71 -0.73 18.16 16 44 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 45 H 0.41 7.71 8.01 -92.71 -0.74 6.97 16 46 H 0.26 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -70.36 380.22 1.64 -68.72 By element: Atomic # 1 Polarization: 40.73 SS G_CDS: -1.07 Total: 39.67 kcal Atomic # 6 Polarization: 13.75 SS G_CDS: 6.58 Total: 20.33 kcal Atomic # 7 Polarization: -126.09 SS G_CDS: -7.44 Total: -133.53 kcal Atomic # 8 Polarization: -41.66 SS G_CDS: 1.54 Total: -40.12 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -70.36 1.64 -68.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279015795.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.610 kcal (2) G-P(sol) polarization free energy of solvation -70.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds