Wall clock time and date at job start Tue Mar 31 2020 22:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47000 * 2 1 4 4 C 1.53002 * 109.47089 * 239.99872 * 2 1 3 5 5 C 1.52999 * 109.47261 * 119.99815 * 2 1 3 6 6 H 1.09001 * 109.47525 * 180.02562 * 5 2 1 7 7 C 1.53002 * 109.47115 * 300.00041 * 5 2 1 8 8 N 1.46907 * 109.46963 * 175.00156 * 7 5 2 9 9 C 1.46904 * 110.99467 * 180.02562 * 8 7 5 10 10 C 1.50707 * 109.46905 * 179.97438 * 9 8 7 11 11 O 1.21296 * 119.99774 * 359.97438 * 10 9 8 12 12 N 1.34766 * 120.00348 * 179.97438 * 10 9 8 13 13 C 1.37095 * 120.00552 * 179.97438 * 12 10 9 14 14 H 1.08004 * 119.99480 * 0.02562 * 13 12 10 15 15 C 1.38952 * 120.00370 * 180.02562 * 13 12 10 16 16 N 1.31409 * 119.99838 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99790 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47152 * 90.00081 * 17 15 13 19 19 H 1.48503 * 109.46676 * 209.99845 * 17 15 13 20 20 H 1.48498 * 109.47019 * 329.99761 * 17 15 13 21 21 N 1.46497 * 109.47197 * 59.99964 * 5 2 1 22 22 C 1.34780 * 119.99731 * 85.00111 * 21 5 2 23 23 O 1.21495 * 120.00122 * 0.02562 * 22 21 5 24 24 C 1.48280 * 119.99950 * 179.97438 * 22 21 5 25 25 C 1.47483 * 128.71196 * 180.02562 * 24 22 21 26 26 N 1.30648 * 102.71700 * 180.02562 * 25 24 22 27 27 O 1.20837 * 109.61924 * 0.02562 * 26 25 24 28 28 N 1.20905 * 115.90846 * 0.02562 * 27 26 25 29 29 H 1.09005 * 109.47038 * 299.99820 * 1 2 3 30 30 H 1.08993 * 109.47381 * 60.00365 * 1 2 3 31 31 H 1.09003 * 109.46543 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47445 * 179.97438 * 3 2 1 33 33 H 1.09007 * 109.47279 * 299.99996 * 3 2 1 34 34 H 1.09001 * 109.47153 * 59.99697 * 3 2 1 35 35 H 1.08995 * 109.46809 * 299.99411 * 4 2 1 36 36 H 1.08995 * 109.46718 * 59.99839 * 4 2 1 37 37 H 1.09001 * 109.46484 * 179.97438 * 4 2 1 38 38 H 1.09001 * 109.47527 * 295.00130 * 7 5 2 39 39 H 1.08999 * 109.47225 * 55.00432 * 7 5 2 40 40 H 1.00905 * 110.99878 * 303.94878 * 8 7 5 41 41 H 1.08996 * 109.47282 * 299.99279 * 9 8 7 42 42 H 1.09000 * 109.47470 * 60.00022 * 9 8 7 43 43 H 0.97004 * 119.99977 * 0.02562 * 12 10 9 44 44 H 0.97000 * 120.00149 * 180.02562 * 16 15 13 45 45 H 0.96999 * 120.00239 * 265.00065 * 21 5 2 46 46 H 1.07995 * 128.64695 * 0.03393 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2492 6 1 3.1300 -0.7208 1.2495 7 6 1.5300 0.0001 2.4985 8 7 1.9187 -0.7586 3.6949 9 6 1.4443 -0.0945 4.9164 10 6 1.8604 -0.9003 6.1201 11 8 2.4897 -1.9269 5.9747 12 7 1.5332 -0.4802 7.3581 13 6 1.9112 -1.2134 8.4532 14 1 2.4716 -2.1275 8.3236 15 6 1.5733 -0.7805 9.7296 16 7 0.8911 0.3315 9.8871 17 14 2.0891 -1.7792 11.2215 18 1 3.4221 -1.3200 11.6880 19 1 1.0939 -1.5953 12.3083 20 1 2.1612 -3.2163 10.8543 21 7 1.5517 -2.1024 1.2493 22 6 2.2286 -3.0564 0.5798 23 8 3.2439 -2.7711 -0.0233 24 6 1.7347 -4.4546 0.5804 25 6 2.3164 -5.6385 -0.0792 26 7 1.4826 -6.5893 0.2491 27 8 0.5993 -6.1347 0.9370 28 7 0.6663 -4.9498 1.1679 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2491 36 1 1.6766 -0.2075 -2.1391 37 1 3.1300 -0.7208 -1.2494 38 1 1.9646 0.9987 2.5444 39 1 0.4437 0.0782 2.4549 40 1 1.5819 -1.7085 3.6460 41 1 1.8780 0.9034 4.9793 42 1 0.3574 -0.0174 4.8893 43 1 1.0295 0.3407 7.4745 44 1 0.6555 0.6340 10.7781 45 1 0.7413 -2.3303 1.7312 46 1 3.2094 -5.7035 -0.6831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279015796.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:30 Heat of formation + Delta-G solvation = 43.562341 kcal Electronic energy + Delta-G solvation = -29895.512256 eV Core-core repulsion = 25632.784226 eV Total energy + Delta-G solvation = -4262.728030 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -47.19168 -40.71678 -38.44056 -37.89474 -35.25831 -35.06560 -34.74592 -33.93503 -33.56560 -31.25487 -29.43394 -27.58271 -27.47635 -26.65240 -25.60769 -24.36844 -23.96702 -22.28611 -21.26040 -19.39097 -19.30860 -19.27408 -18.57453 -18.00375 -17.76866 -16.52590 -16.32776 -16.04610 -15.46286 -15.26784 -14.71505 -14.59431 -14.40256 -14.24739 -14.01127 -13.89895 -13.56701 -13.16170 -13.12964 -12.59575 -12.55166 -12.37033 -12.20885 -11.98200 -11.88555 -11.70993 -11.64060 -11.55635 -11.46957 -11.37178 -11.10620 -11.05673 -10.94114 -10.69637 -10.56287 -10.40793 -10.23876 -9.53180 -9.33223 -8.51059 -8.13857 -7.98673 -6.44021 -3.84841 0.47314 1.03960 2.34534 2.68695 3.12219 3.16669 3.20220 3.25497 3.31372 3.64090 3.87136 3.95295 4.21269 4.42558 4.48572 4.57500 4.65701 4.68715 4.91995 5.00409 5.03720 5.15627 5.21719 5.26042 5.39640 5.45645 5.49648 5.59845 5.65968 5.70676 5.72809 5.78753 5.85083 5.88724 5.96753 6.02410 6.18072 6.21714 6.23994 7.01006 7.07367 7.51079 7.53269 7.68779 8.03728 8.11512 8.58530 9.15649 9.51455 10.02799 10.73672 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010553 B = 0.002816 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.727881 B = 9940.815791 C =12001.243941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 C -0.142 4.142 4 C -0.133 4.133 5 C 0.159 3.841 6 H 0.104 0.896 7 C 0.045 3.955 8 N -0.667 5.667 9 C 0.050 3.950 10 C 0.439 3.561 11 O -0.583 6.583 12 N -0.562 5.562 13 C -0.300 4.300 14 H 0.103 0.897 15 C 0.023 3.977 16 N -0.902 5.902 17 Si 0.930 3.070 18 H -0.278 1.278 19 H -0.283 1.283 20 H -0.269 1.269 21 N -0.698 5.698 22 C 0.611 3.389 23 O -0.506 6.506 24 C -0.042 4.042 25 C 0.037 3.963 26 N -0.354 5.354 27 O 0.343 5.657 28 N -0.318 5.318 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.048 0.952 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.039 0.961 40 H 0.347 0.653 41 H 0.088 0.912 42 H 0.044 0.956 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.405 0.595 46 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.879 -0.962 -22.935 23.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.081 4.081 3 C -0.200 4.200 4 C -0.190 4.190 5 C 0.055 3.945 6 H 0.122 0.878 7 C -0.084 4.084 8 N -0.300 5.300 9 C -0.082 4.082 10 C 0.225 3.775 11 O -0.467 6.467 12 N -0.199 5.199 13 C -0.429 4.429 14 H 0.121 0.879 15 C -0.179 4.179 16 N -0.543 5.543 17 Si 0.757 3.243 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.194 1.194 21 N -0.349 5.349 22 C 0.393 3.607 23 O -0.380 6.380 24 C -0.207 4.207 25 C -0.149 4.149 26 N -0.077 5.077 27 O 0.116 5.884 28 N -0.038 5.038 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.057 0.943 40 H 0.166 0.834 41 H 0.106 0.894 42 H 0.062 0.938 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.240 0.760 46 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -2.053 -1.684 -22.785 22.939 hybrid contribution -0.732 0.275 0.801 1.119 sum -2.785 -1.409 -21.984 22.204 Atomic orbital electron populations 1.21955 0.94476 1.01778 1.02081 1.20962 0.95973 0.95994 0.95123 1.21898 1.01557 0.94382 1.02133 1.21905 1.01934 0.99468 0.95687 1.21259 1.01008 0.78597 0.93626 0.87756 1.22442 0.98371 0.98602 0.89027 1.60044 1.64342 1.05776 0.99826 1.21690 0.97748 0.98746 0.90036 1.19784 0.85697 0.87982 0.84087 1.90534 1.44069 1.26398 1.85693 1.41850 1.49420 1.24209 1.04414 1.19704 1.32897 1.06719 0.83612 0.87939 1.25259 0.96851 0.96655 0.99112 1.69608 1.38818 1.21772 1.24096 0.85859 0.78201 0.79954 0.80298 1.20358 1.20909 1.19404 1.45791 1.28736 1.08681 1.51723 1.16311 0.83527 0.80997 0.79832 1.90848 1.23461 1.80578 1.43073 1.26310 0.94085 0.99151 1.01194 1.27733 1.01517 0.85069 1.00542 1.75078 1.00138 1.24107 1.08405 1.85101 1.38466 1.16742 1.48049 1.75408 1.18155 0.94285 1.15923 0.92077 0.92494 0.92851 0.92075 0.92332 0.92049 0.93186 0.93304 0.91534 0.88888 0.94341 0.83353 0.89394 0.93796 0.77465 0.91849 0.75987 0.75645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 7.97 37.16 0.30 -0.81 16 2 C -0.08 -0.66 0.62 -154.51 -0.10 -0.76 16 3 C -0.14 -1.06 8.12 37.16 0.30 -0.76 16 4 C -0.13 -1.22 7.00 37.16 0.26 -0.96 16 5 C 0.16 1.62 1.83 -67.93 -0.12 1.50 16 6 H 0.10 1.29 7.58 -51.93 -0.39 0.89 16 7 C 0.05 0.49 4.58 -3.82 -0.02 0.47 16 8 N -0.67 -10.11 6.12 -115.05 -0.70 -10.82 16 9 C 0.05 0.85 6.17 -4.97 -0.03 0.82 16 10 C 0.44 10.23 7.82 -10.99 -0.09 10.14 16 11 O -0.58 -15.79 15.78 5.54 0.09 -15.70 16 12 N -0.56 -14.10 5.29 -10.96 -0.06 -14.16 16 13 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 14 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 15 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 16 N -0.90 -24.37 13.05 55.50 0.72 -23.65 16 17 Si 0.93 21.04 29.55 -169.99 -5.02 16.01 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 N -0.70 -7.25 3.48 -54.61 -0.19 -7.44 16 22 C 0.61 7.02 6.20 -12.13 -0.08 6.94 16 23 O -0.51 -6.68 14.17 5.37 0.08 -6.60 16 24 C -0.04 -0.44 7.56 -80.07 -0.61 -1.05 16 25 C 0.04 0.33 12.63 -14.29 -0.18 0.15 16 26 N -0.35 -3.54 12.22 30.71 0.38 -3.17 16 27 O 0.34 3.59 11.65 27.26 0.32 3.91 16 28 N -0.32 -3.47 12.13 33.49 0.41 -3.07 16 29 H 0.06 0.45 6.32 -51.93 -0.33 0.12 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.42 7.60 -51.93 -0.39 0.03 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 34 H 0.06 0.43 6.54 -51.93 -0.34 0.09 16 35 H 0.05 0.51 5.77 -51.93 -0.30 0.21 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.69 7.53 -51.93 -0.39 0.30 16 38 H 0.09 0.93 6.71 -51.93 -0.35 0.58 16 39 H 0.04 0.36 6.17 -51.93 -0.32 0.04 16 40 H 0.35 5.54 7.28 -39.29 -0.29 5.25 16 41 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 44 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 45 H 0.40 3.95 8.01 -40.82 -0.33 3.62 16 46 H 0.23 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 380.23 15.07 5.73 5.73 Total: -1.00 -32.15 380.23 -5.08 -37.23 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -6.22 Total: 14.01 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -0.60 Total: 7.71 kcal Atomic # 7 Polarization: -62.86 SS G_CDS: 0.55 Total: -62.30 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: 0.48 Total: -18.39 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.15 -5.08 -37.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279015796.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.795 kcal (2) G-P(sol) polarization free energy of solvation -32.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds