Wall clock time and date at job start Tue Mar 31 2020 22:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47000 * 2 1 4 4 C 1.53002 * 109.47089 * 239.99872 * 2 1 3 5 5 C 1.52999 * 109.47261 * 119.99815 * 2 1 3 6 6 H 1.09001 * 109.47525 * 180.02562 * 5 2 1 7 7 C 1.53002 * 109.47115 * 300.00041 * 5 2 1 8 8 N 1.46907 * 109.46963 * 175.00156 * 7 5 2 9 9 C 1.46904 * 110.99467 * 180.02562 * 8 7 5 10 10 C 1.50707 * 109.46905 * 179.97438 * 9 8 7 11 11 O 1.21296 * 119.99774 * 359.97438 * 10 9 8 12 12 N 1.34766 * 120.00348 * 179.97438 * 10 9 8 13 13 C 1.37095 * 120.00552 * 179.97438 * 12 10 9 14 14 H 1.08004 * 119.99480 * 0.02562 * 13 12 10 15 15 C 1.38952 * 120.00370 * 180.02562 * 13 12 10 16 16 N 1.31409 * 119.99838 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99790 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47152 * 90.00081 * 17 15 13 19 19 H 1.48503 * 109.46676 * 209.99845 * 17 15 13 20 20 H 1.48498 * 109.47019 * 329.99761 * 17 15 13 21 21 N 1.46497 * 109.47197 * 59.99964 * 5 2 1 22 22 C 1.34780 * 119.99731 * 85.00111 * 21 5 2 23 23 O 1.21495 * 120.00122 * 0.02562 * 22 21 5 24 24 C 1.48280 * 119.99950 * 179.97438 * 22 21 5 25 25 C 1.47483 * 128.71196 * 180.02562 * 24 22 21 26 26 N 1.30648 * 102.71700 * 180.02562 * 25 24 22 27 27 O 1.20837 * 109.61924 * 0.02562 * 26 25 24 28 28 N 1.20905 * 115.90846 * 0.02562 * 27 26 25 29 29 H 1.09005 * 109.47038 * 299.99820 * 1 2 3 30 30 H 1.08993 * 109.47381 * 60.00365 * 1 2 3 31 31 H 1.09003 * 109.46543 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47445 * 179.97438 * 3 2 1 33 33 H 1.09007 * 109.47279 * 299.99996 * 3 2 1 34 34 H 1.09001 * 109.47153 * 59.99697 * 3 2 1 35 35 H 1.08995 * 109.46809 * 299.99411 * 4 2 1 36 36 H 1.08995 * 109.46718 * 59.99839 * 4 2 1 37 37 H 1.09001 * 109.46484 * 179.97438 * 4 2 1 38 38 H 1.09001 * 109.47527 * 295.00130 * 7 5 2 39 39 H 1.08999 * 109.47225 * 55.00432 * 7 5 2 40 40 H 1.00905 * 110.99878 * 303.94878 * 8 7 5 41 41 H 1.08996 * 109.47282 * 299.99279 * 9 8 7 42 42 H 1.09000 * 109.47470 * 60.00022 * 9 8 7 43 43 H 0.97004 * 119.99977 * 0.02562 * 12 10 9 44 44 H 0.97000 * 120.00149 * 180.02562 * 16 15 13 45 45 H 0.96999 * 120.00239 * 265.00065 * 21 5 2 46 46 H 1.07995 * 128.64695 * 0.03393 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2492 6 1 3.1300 -0.7208 1.2495 7 6 1.5300 0.0001 2.4985 8 7 1.9187 -0.7586 3.6949 9 6 1.4443 -0.0945 4.9164 10 6 1.8604 -0.9003 6.1201 11 8 2.4897 -1.9269 5.9747 12 7 1.5332 -0.4802 7.3581 13 6 1.9112 -1.2134 8.4532 14 1 2.4716 -2.1275 8.3236 15 6 1.5733 -0.7805 9.7296 16 7 0.8911 0.3315 9.8871 17 14 2.0891 -1.7792 11.2215 18 1 3.4221 -1.3200 11.6880 19 1 1.0939 -1.5953 12.3083 20 1 2.1612 -3.2163 10.8543 21 7 1.5517 -2.1024 1.2493 22 6 2.2286 -3.0564 0.5798 23 8 3.2439 -2.7711 -0.0233 24 6 1.7347 -4.4546 0.5804 25 6 2.3164 -5.6385 -0.0792 26 7 1.4826 -6.5893 0.2491 27 8 0.5993 -6.1347 0.9370 28 7 0.6663 -4.9498 1.1679 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2491 36 1 1.6766 -0.2075 -2.1391 37 1 3.1300 -0.7208 -1.2494 38 1 1.9646 0.9987 2.5444 39 1 0.4437 0.0782 2.4549 40 1 1.5819 -1.7085 3.6460 41 1 1.8780 0.9034 4.9793 42 1 0.3574 -0.0174 4.8893 43 1 1.0295 0.3407 7.4745 44 1 0.6555 0.6340 10.7781 45 1 0.7413 -2.3303 1.7312 46 1 3.2094 -5.7035 -0.6831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279015796.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:29 Heat of formation + Delta-G solvation = 18.886153 kcal Electronic energy + Delta-G solvation = -29896.582296 eV Core-core repulsion = 25632.784226 eV Total energy + Delta-G solvation = -4263.798069 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -47.98911 -41.58357 -40.14163 -38.89666 -36.44993 -35.94445 -35.73728 -35.54939 -34.53285 -33.26904 -30.52617 -28.22380 -28.14409 -27.98792 -26.74708 -25.60425 -25.08334 -23.23672 -22.12242 -21.13743 -20.11826 -20.06559 -19.95412 -19.35792 -18.73479 -17.84591 -17.33726 -16.98656 -16.93740 -16.42042 -16.04004 -15.96100 -15.53543 -15.27727 -15.24297 -14.94909 -14.66438 -14.31421 -14.07416 -13.92454 -13.52556 -13.38204 -13.18106 -13.07455 -13.01429 -12.88094 -12.73382 -12.61164 -12.44804 -12.43036 -12.30566 -12.17156 -12.11868 -11.87777 -11.70111 -11.51839 -11.46060 -11.41560 -10.38581 -10.14884 -10.02112 -9.33657 -8.47739 -5.96201 -0.37380 0.29041 1.37026 1.41140 1.50543 1.53463 1.80812 2.04872 2.27941 2.32436 2.43156 2.80824 2.90456 3.19867 3.45326 3.63536 3.71176 3.77233 3.87174 3.97810 4.16660 4.27066 4.34073 4.40792 4.47296 4.52632 4.59084 4.69402 4.76285 4.83198 4.90044 4.95975 5.05738 5.08173 5.18821 5.22797 5.35080 5.40056 5.48972 5.53056 5.84000 6.06683 6.15022 6.31210 6.59491 6.81682 7.12153 7.31113 7.55810 8.11532 8.69562 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010553 B = 0.002816 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.727881 B = 9940.815791 C =12001.243941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.072 4.072 3 C -0.141 4.141 4 C -0.128 4.128 5 C 0.163 3.837 6 H 0.081 0.919 7 C 0.050 3.950 8 N -0.685 5.685 9 C 0.065 3.935 10 C 0.435 3.565 11 O -0.626 6.626 12 N -0.571 5.571 13 C -0.335 4.335 14 H 0.076 0.924 15 C -0.011 4.011 16 N -0.919 5.919 17 Si 0.990 3.010 18 H -0.272 1.272 19 H -0.269 1.269 20 H -0.274 1.274 21 N -0.693 5.693 22 C 0.610 3.390 23 O -0.528 6.528 24 C -0.055 4.055 25 C 0.051 3.949 26 N -0.363 5.363 27 O 0.338 5.662 28 N -0.325 5.325 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.038 0.962 36 H 0.060 0.940 37 H 0.049 0.951 38 H 0.106 0.894 39 H 0.061 0.939 40 H 0.340 0.660 41 H 0.109 0.891 42 H 0.072 0.928 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.409 0.591 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.653 0.066 -23.497 23.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 C -0.199 4.199 4 C -0.185 4.185 5 C 0.059 3.941 6 H 0.099 0.901 7 C -0.079 4.079 8 N -0.317 5.317 9 C -0.067 4.067 10 C 0.223 3.777 11 O -0.513 6.513 12 N -0.209 5.209 13 C -0.464 4.464 14 H 0.094 0.906 15 C -0.211 4.211 16 N -0.560 5.560 17 Si 0.814 3.186 18 H -0.197 1.197 19 H -0.194 1.194 20 H -0.199 1.199 21 N -0.344 5.344 22 C 0.393 3.607 23 O -0.403 6.403 24 C -0.220 4.220 25 C -0.134 4.134 26 N -0.088 5.088 27 O 0.113 5.887 28 N -0.044 5.044 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.124 0.876 39 H 0.079 0.921 40 H 0.158 0.842 41 H 0.127 0.873 42 H 0.090 0.910 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.244 0.756 46 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -2.866 -0.611 -23.347 23.530 hybrid contribution -0.468 -0.053 0.905 1.020 sum -3.334 -0.664 -22.442 22.698 Atomic orbital electron populations 1.21935 0.93393 1.01723 1.02947 1.20905 0.96683 0.96229 0.93525 1.21901 1.01207 0.93630 1.03128 1.21839 1.00842 0.99103 0.96713 1.21224 0.99727 0.78675 0.94502 0.90104 1.22530 0.99806 0.98478 0.87056 1.60024 1.65167 1.05853 1.00691 1.21557 0.99408 0.98120 0.87601 1.20955 0.83913 0.87656 0.85204 1.90503 1.45676 1.28546 1.86536 1.41909 1.49962 1.24322 1.04679 1.19638 1.34452 1.06938 0.85396 0.90568 1.25995 0.96408 0.97566 1.01093 1.69659 1.38823 1.22405 1.25065 0.84968 0.78294 0.78160 0.77171 1.19700 1.19409 1.19902 1.45793 1.28622 1.08746 1.51254 1.16413 0.83302 0.81396 0.79621 1.90836 1.24354 1.80979 1.44088 1.26343 0.94490 0.99275 1.01912 1.28234 1.01705 0.83901 0.99600 1.75086 1.00446 1.24423 1.08846 1.85096 1.38772 1.16508 1.48309 1.75381 1.18417 0.94579 1.16031 0.91298 0.91540 0.93383 0.92726 0.91210 0.91187 0.94333 0.92080 0.93153 0.87573 0.92108 0.84162 0.87303 0.91030 0.76875 0.91259 0.75556 0.72770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 7.97 71.98 0.57 -1.24 16 2 C -0.07 -1.09 0.62 -52.18 -0.03 -1.12 16 3 C -0.14 -1.80 8.12 71.98 0.58 -1.21 16 4 C -0.13 -2.24 7.00 71.98 0.50 -1.74 16 5 C 0.16 3.16 1.83 44.99 0.08 3.24 16 6 H 0.08 1.99 7.58 -2.39 -0.02 1.98 16 7 C 0.05 0.96 4.58 86.30 0.40 1.35 16 8 N -0.68 -19.91 6.12 -517.90 -3.17 -23.08 16 9 C 0.07 2.08 6.17 85.56 0.53 2.60 16 10 C 0.44 20.32 7.82 87.66 0.69 21.00 16 11 O -0.63 -34.68 15.78 -3.08 -0.05 -34.73 16 12 N -0.57 -28.89 5.29 -306.98 -1.62 -30.51 16 13 C -0.33 -18.97 9.68 84.04 0.81 -18.16 16 14 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 15 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 16 N -0.92 -49.07 13.05 21.66 0.28 -48.79 16 17 Si 0.99 42.90 29.55 68.60 2.03 44.93 16 18 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 19 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 N -0.69 -14.10 3.48 -445.00 -1.55 -15.65 16 22 C 0.61 14.01 6.20 86.91 0.54 14.54 16 23 O -0.53 -14.03 14.17 -3.70 -0.05 -14.08 16 24 C -0.05 -1.15 7.56 44.29 0.34 -0.82 16 25 C 0.05 0.87 12.63 87.31 1.10 1.97 16 26 N -0.36 -7.06 12.22 -61.43 -0.75 -7.81 16 27 O 0.34 7.04 11.65 140.85 1.64 8.68 16 28 N -0.32 -7.07 12.13 -52.06 -0.63 -7.70 16 29 H 0.07 0.78 6.32 -2.38 -0.02 0.76 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.67 7.60 -2.39 -0.02 0.65 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.07 0.78 6.54 -2.39 -0.02 0.76 16 35 H 0.04 0.76 5.77 -2.39 -0.01 0.74 16 36 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 37 H 0.05 1.04 7.53 -2.39 -0.02 1.03 16 38 H 0.11 1.80 6.71 -2.39 -0.02 1.79 16 39 H 0.06 0.94 6.17 -2.39 -0.01 0.93 16 40 H 0.34 10.67 7.28 -89.69 -0.65 10.02 16 41 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 42 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.40 18.89 7.90 -92.70 -0.73 18.16 16 44 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 45 H 0.41 7.72 8.01 -92.71 -0.74 6.98 16 46 H 0.26 2.46 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -70.36 380.23 1.64 -68.72 By element: Atomic # 1 Polarization: 40.74 SS G_CDS: -1.07 Total: 39.68 kcal Atomic # 6 Polarization: 13.75 SS G_CDS: 6.58 Total: 20.32 kcal Atomic # 7 Polarization: -126.09 SS G_CDS: -7.44 Total: -133.53 kcal Atomic # 8 Polarization: -41.66 SS G_CDS: 1.54 Total: -40.12 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -70.36 1.64 -68.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279015796.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.609 kcal (2) G-P(sol) polarization free energy of solvation -70.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds