Wall clock time and date at job start Tue Mar 31 2020 22:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29956 * 125.30821 * 2 1 4 4 O 1.41876 * 107.41574 * 179.97438 * 3 2 1 5 5 N 1.41878 * 106.38871 * 359.78627 * 4 3 2 6 6 C 1.29950 * 107.41037 * 0.36579 * 5 4 3 7 7 C 1.50705 * 125.30302 * 179.89289 * 6 5 4 8 8 C 1.50691 * 109.47240 * 269.69232 * 7 6 5 9 9 O 1.21286 * 120.00056 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00063 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00223 * 0.02562 * 10 8 7 12 12 C 1.46507 * 120.00200 * 179.97438 * 10 8 7 13 13 C 1.53002 * 109.47352 * 263.60054 * 12 10 8 14 14 H 1.09001 * 109.46447 * 296.94714 * 13 12 10 15 15 C 1.52996 * 109.46800 * 176.94943 * 13 12 10 16 16 N 1.46892 * 109.47126 * 56.94525 * 13 12 10 17 17 C 1.46901 * 110.99866 * 198.92871 * 16 13 12 18 18 C 1.50699 * 109.47107 * 180.02562 * 17 16 13 19 19 O 1.21295 * 120.00227 * 359.97438 * 18 17 16 20 20 N 1.34780 * 120.00126 * 180.02562 * 18 17 16 21 21 C 1.37099 * 120.00245 * 180.02562 * 20 18 17 22 22 H 1.08004 * 119.99422 * 359.97438 * 21 20 18 23 23 C 1.38944 * 120.00063 * 179.97438 * 21 20 18 24 24 N 1.31412 * 119.99962 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99892 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47246 * 60.00133 * 25 23 21 27 27 H 1.48504 * 109.46855 * 179.97438 * 25 23 21 28 28 H 1.48489 * 109.47106 * 299.99628 * 25 23 21 29 29 H 1.09005 * 109.47070 * 270.00161 * 1 2 3 30 30 H 1.09005 * 109.47284 * 29.99311 * 1 2 3 31 31 H 1.08997 * 109.47584 * 149.99662 * 1 2 3 32 32 H 1.08994 * 109.47313 * 149.68998 * 7 6 5 33 33 H 1.09003 * 109.46760 * 29.69458 * 7 6 5 34 34 H 1.09005 * 109.46810 * 265.95433 * 11 10 8 35 35 H 1.09003 * 109.47084 * 25.94943 * 11 10 8 36 36 H 1.08996 * 109.47535 * 145.95219 * 11 10 8 37 37 H 1.08995 * 109.46884 * 143.59309 * 12 10 8 38 38 H 1.09006 * 109.46747 * 23.59878 * 12 10 8 39 39 H 1.08996 * 109.47685 * 299.99570 * 15 13 12 40 40 H 1.09000 * 109.47133 * 59.99906 * 15 13 12 41 41 H 1.09003 * 109.46865 * 179.97438 * 15 13 12 42 42 H 1.00900 * 111.00633 * 322.88867 * 16 13 12 43 43 H 1.09000 * 109.47334 * 300.00101 * 17 16 13 44 44 H 1.08991 * 109.47014 * 60.00684 * 17 16 13 45 45 H 0.97003 * 119.99610 * 359.97438 * 20 18 17 46 46 H 0.97004 * 119.99826 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6082 0.6246 0.0006 5 7 3.5709 -0.7937 0.0060 6 6 2.3212 -1.1498 0.0005 7 6 1.8207 -2.5714 0.0010 8 6 1.6540 -3.0457 -1.4195 9 8 1.9162 -2.3029 -2.3417 10 7 1.2144 -4.2959 -1.6653 11 6 0.8982 -5.1935 -0.5515 12 6 1.0517 -4.7570 -3.0464 13 6 -0.4076 -4.5851 -3.4729 14 1 -1.0443 -5.2139 -2.8507 15 6 -0.5620 -4.9952 -4.9388 16 7 -0.8020 -3.1791 -3.3135 17 6 -2.2642 -3.0439 -3.2732 18 6 -2.6300 -1.5911 -3.1099 19 8 -1.7583 -0.7510 -3.0340 20 7 -3.9257 -1.2254 -3.0471 21 6 -4.2585 0.0964 -2.8990 22 1 -3.4823 0.8444 -2.8322 23 6 -5.5942 0.4734 -2.8348 24 7 -6.5386 -0.4367 -2.9165 25 14 -6.0476 2.2743 -2.6323 26 1 -5.5100 3.0519 -3.7774 27 1 -7.5258 2.4110 -2.5922 28 1 -5.4677 2.7914 -1.3669 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8901 -0.5137 31 1 -0.3634 -0.8899 -0.5139 32 1 0.8607 -2.6184 0.5148 33 1 2.5396 -3.2094 0.5152 34 1 1.7687 -5.8082 -0.3220 35 1 0.6284 -4.6040 0.3248 36 1 0.0625 -5.8360 -0.8286 37 1 1.3283 -5.8091 -3.1131 38 1 1.6938 -4.1701 -3.7033 39 1 0.0748 -4.3665 -5.5611 40 1 -0.2693 -6.0385 -5.0570 41 1 -1.6017 -4.8732 -5.2426 42 1 -0.3787 -2.7758 -2.4912 43 1 -2.6899 -3.4231 -4.2022 44 1 -2.6588 -3.6149 -2.4329 45 1 -4.6227 -1.8972 -3.1074 46 1 -7.4711 -0.1735 -2.8713 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283692106.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:42 Heat of formation + Delta-G solvation = 28.379559 kcal Electronic energy + Delta-G solvation = -30704.710080 eV Core-core repulsion = 26441.323675 eV Total energy + Delta-G solvation = -4263.386405 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.57077 -40.25304 -38.31591 -36.90799 -35.11852 -34.56754 -33.88187 -33.38550 -31.40800 -31.01588 -29.73066 -28.58177 -27.68743 -26.47905 -25.84675 -24.00120 -22.61299 -21.12973 -20.40541 -19.52722 -19.18228 -17.91735 -17.56251 -17.08717 -16.62295 -16.38404 -15.90362 -15.55084 -15.34522 -14.86469 -14.53406 -14.43445 -14.21116 -13.89094 -13.75828 -13.61615 -13.43482 -13.24531 -12.98467 -12.81621 -12.72610 -12.47740 -12.41172 -12.08406 -11.89062 -11.75234 -11.69962 -11.59901 -11.58523 -11.42731 -11.10561 -10.98217 -10.88281 -10.50304 -10.45391 -10.22414 -10.00643 -9.50278 -8.96987 -8.41620 -8.03307 -7.95803 -6.42926 -3.83533 0.54578 1.89703 2.34688 2.54651 2.79736 3.13994 3.19054 3.25170 3.29671 3.80684 3.89860 4.05626 4.15156 4.30844 4.48970 4.57638 4.71211 4.76568 4.90760 4.97589 5.03079 5.19986 5.21774 5.23780 5.24418 5.27612 5.35979 5.38513 5.49716 5.68001 5.71220 5.72944 5.76794 5.97041 5.99290 6.11385 6.18557 6.25529 6.36155 6.94915 6.98014 7.26726 7.53839 7.69280 7.90297 8.05271 8.60736 9.17176 9.53484 10.05322 10.74750 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008967 B = 0.004035 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3121.882991 B = 6937.731924 C = 9396.180096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.097 3.903 3 N -0.276 5.276 4 O 0.022 5.978 5 N -0.270 5.270 6 C 0.097 3.903 7 C -0.079 4.079 8 C 0.511 3.489 9 O -0.495 6.495 10 N -0.621 5.621 11 C 0.071 3.929 12 C 0.114 3.886 13 C 0.067 3.933 14 H 0.039 0.961 15 C -0.140 4.140 16 N -0.655 5.655 17 C 0.049 3.951 18 C 0.439 3.561 19 O -0.576 6.576 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.903 5.903 25 Si 0.928 3.072 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.128 0.872 33 H 0.123 0.877 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.059 0.941 42 H 0.347 0.653 43 H 0.085 0.915 44 H 0.038 0.962 45 H 0.391 0.609 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.998 -15.185 7.669 20.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 N -0.023 5.023 4 O -0.118 6.118 5 N -0.013 5.013 6 C -0.086 4.086 7 C -0.120 4.120 8 C 0.297 3.703 9 O -0.368 6.368 10 N -0.356 5.356 11 C -0.072 4.072 12 C -0.008 4.008 13 C -0.044 4.044 14 H 0.057 0.943 15 C -0.198 4.198 16 N -0.291 5.291 17 C -0.084 4.084 18 C 0.224 3.776 19 O -0.459 6.459 20 N -0.201 5.201 21 C -0.427 4.427 22 H 0.120 0.880 23 C -0.178 4.178 24 N -0.544 5.544 25 Si 0.755 3.245 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.146 0.854 33 H 0.141 0.859 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.117 0.883 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.169 0.831 43 H 0.103 0.897 44 H 0.056 0.944 45 H 0.224 0.776 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.793 -13.182 6.575 19.510 hybrid contribution -1.727 -0.466 0.899 2.002 sum 11.066 -13.648 7.474 19.094 Atomic orbital electron populations 1.20596 0.83315 1.07094 1.03923 1.24630 1.00627 0.88441 0.94857 1.79982 0.88571 1.19361 1.14356 1.93361 1.20883 1.12897 1.84695 1.79796 1.17331 0.91976 1.12149 1.23701 0.90197 0.97556 0.97190 1.20376 1.04880 0.89443 0.97290 1.20116 0.77938 0.81860 0.90412 1.90895 1.47349 1.53121 1.45422 1.47815 1.67002 1.13187 1.07637 1.21906 1.01458 0.94484 0.89312 1.21758 0.97092 1.00211 0.81774 1.21902 0.95043 0.90217 0.97239 0.94345 1.21751 1.02792 1.00069 0.95208 1.60086 1.07258 1.13998 1.47755 1.21742 0.89118 0.96523 1.01024 1.19818 0.83643 0.89492 0.84601 1.90551 1.48111 1.52219 1.55039 1.41865 1.05310 1.09050 1.63910 1.19633 0.92331 0.83973 1.46801 0.87989 1.25228 0.95346 0.99824 0.97413 1.69603 1.00609 1.33694 1.50511 0.85959 0.77122 0.82261 0.79149 1.19897 1.21011 1.19908 0.88913 0.88235 0.88641 0.85386 0.85874 0.92040 0.90648 0.90676 0.89942 0.88336 0.91542 0.92723 0.92187 0.83144 0.89676 0.94420 0.77590 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.22 10.05 36.00 0.36 -0.86 16 2 C 0.10 1.43 7.19 -82.38 -0.59 0.84 16 3 N -0.28 -4.69 12.98 33.74 0.44 -4.25 16 4 O 0.02 0.38 13.71 12.02 0.16 0.55 16 5 N -0.27 -4.15 12.98 33.74 0.44 -3.71 16 6 C 0.10 1.30 5.68 -82.38 -0.47 0.83 16 7 C -0.08 -0.71 4.36 -29.04 -0.13 -0.83 16 8 C 0.51 6.16 6.11 -10.99 -0.07 6.10 16 9 O -0.50 -8.60 14.83 5.55 0.08 -8.52 16 10 N -0.62 -5.64 2.53 -181.57 -0.46 -6.10 16 11 C 0.07 0.34 10.33 59.84 0.62 0.96 16 12 C 0.11 1.12 5.21 -4.04 -0.02 1.10 16 13 C 0.07 0.77 2.92 -67.72 -0.20 0.57 16 14 H 0.04 0.39 7.86 -51.93 -0.41 -0.02 16 15 C -0.14 -1.48 9.34 37.16 0.35 -1.14 16 16 N -0.66 -10.54 5.92 -108.00 -0.64 -11.18 16 17 C 0.05 0.83 5.97 -4.98 -0.03 0.80 16 18 C 0.44 9.96 7.82 -10.98 -0.09 9.88 16 19 O -0.58 -14.98 15.78 5.54 0.09 -14.89 16 20 N -0.56 -13.75 5.29 -10.96 -0.06 -13.81 16 21 C -0.30 -8.04 9.68 -14.93 -0.14 -8.18 16 22 H 0.10 2.89 7.16 -52.48 -0.38 2.52 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 24 N -0.90 -23.99 13.05 55.50 0.72 -23.26 16 25 Si 0.93 20.74 29.55 -169.99 -5.02 15.72 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 29 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.10 1.55 8.14 -51.93 -0.42 1.12 16 31 H 0.09 1.33 7.78 -51.93 -0.40 0.93 16 32 H 0.13 0.74 7.05 -51.93 -0.37 0.38 16 33 H 0.12 0.73 8.11 -51.93 -0.42 0.31 16 34 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.07 0.24 6.29 -51.93 -0.33 -0.09 16 36 H 0.07 0.31 8.06 -51.93 -0.42 -0.11 16 37 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 38 H 0.10 1.22 7.24 -51.93 -0.38 0.85 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.68 7.10 -51.93 -0.37 0.31 16 42 H 0.35 5.86 5.18 -39.29 -0.20 5.66 16 43 H 0.09 1.37 7.06 -51.93 -0.37 1.01 16 44 H 0.04 0.57 8.07 -51.93 -0.42 0.15 16 45 H 0.39 9.16 7.90 -40.82 -0.32 8.84 16 46 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 390.06 15.07 5.88 5.88 Total: -1.00 -35.74 390.06 -5.31 -41.05 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -6.45 Total: 11.96 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: -0.50 Total: 10.57 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: 0.44 Total: -62.31 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: 0.33 Total: -22.86 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.74 -5.31 -41.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283692106.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.429 kcal (2) G-P(sol) polarization free energy of solvation -35.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds