Wall clock time and date at job start Tue Mar 31 2020 22:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29956 * 125.30821 * 2 1 4 4 O 1.41876 * 107.41574 * 179.97438 * 3 2 1 5 5 N 1.41878 * 106.38871 * 359.78627 * 4 3 2 6 6 C 1.29950 * 107.41037 * 0.36579 * 5 4 3 7 7 C 1.50705 * 125.30302 * 179.89289 * 6 5 4 8 8 C 1.50691 * 109.47240 * 269.69232 * 7 6 5 9 9 O 1.21286 * 120.00056 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00063 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00223 * 0.02562 * 10 8 7 12 12 C 1.46507 * 120.00200 * 179.97438 * 10 8 7 13 13 C 1.53002 * 109.47352 * 263.60054 * 12 10 8 14 14 H 1.09001 * 109.46447 * 296.94714 * 13 12 10 15 15 C 1.52996 * 109.46800 * 176.94943 * 13 12 10 16 16 N 1.46892 * 109.47126 * 56.94525 * 13 12 10 17 17 C 1.46901 * 110.99866 * 198.92871 * 16 13 12 18 18 C 1.50699 * 109.47107 * 180.02562 * 17 16 13 19 19 O 1.21295 * 120.00227 * 359.97438 * 18 17 16 20 20 N 1.34780 * 120.00126 * 180.02562 * 18 17 16 21 21 C 1.37099 * 120.00245 * 180.02562 * 20 18 17 22 22 H 1.08004 * 119.99422 * 359.97438 * 21 20 18 23 23 C 1.38944 * 120.00063 * 179.97438 * 21 20 18 24 24 N 1.31412 * 119.99962 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99892 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47246 * 60.00133 * 25 23 21 27 27 H 1.48504 * 109.46855 * 179.97438 * 25 23 21 28 28 H 1.48489 * 109.47106 * 299.99628 * 25 23 21 29 29 H 1.09005 * 109.47070 * 270.00161 * 1 2 3 30 30 H 1.09005 * 109.47284 * 29.99311 * 1 2 3 31 31 H 1.08997 * 109.47584 * 149.99662 * 1 2 3 32 32 H 1.08994 * 109.47313 * 149.68998 * 7 6 5 33 33 H 1.09003 * 109.46760 * 29.69458 * 7 6 5 34 34 H 1.09005 * 109.46810 * 265.95433 * 11 10 8 35 35 H 1.09003 * 109.47084 * 25.94943 * 11 10 8 36 36 H 1.08996 * 109.47535 * 145.95219 * 11 10 8 37 37 H 1.08995 * 109.46884 * 143.59309 * 12 10 8 38 38 H 1.09006 * 109.46747 * 23.59878 * 12 10 8 39 39 H 1.08996 * 109.47685 * 299.99570 * 15 13 12 40 40 H 1.09000 * 109.47133 * 59.99906 * 15 13 12 41 41 H 1.09003 * 109.46865 * 179.97438 * 15 13 12 42 42 H 1.00900 * 111.00633 * 322.88867 * 16 13 12 43 43 H 1.09000 * 109.47334 * 300.00101 * 17 16 13 44 44 H 1.08991 * 109.47014 * 60.00684 * 17 16 13 45 45 H 0.97003 * 119.99610 * 359.97438 * 20 18 17 46 46 H 0.97004 * 119.99826 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6082 0.6246 0.0006 5 7 3.5709 -0.7937 0.0060 6 6 2.3212 -1.1498 0.0005 7 6 1.8207 -2.5714 0.0010 8 6 1.6540 -3.0457 -1.4195 9 8 1.9162 -2.3029 -2.3417 10 7 1.2144 -4.2959 -1.6653 11 6 0.8982 -5.1935 -0.5515 12 6 1.0517 -4.7570 -3.0464 13 6 -0.4076 -4.5851 -3.4729 14 1 -1.0443 -5.2139 -2.8507 15 6 -0.5620 -4.9952 -4.9388 16 7 -0.8020 -3.1791 -3.3135 17 6 -2.2642 -3.0439 -3.2732 18 6 -2.6300 -1.5911 -3.1099 19 8 -1.7583 -0.7510 -3.0340 20 7 -3.9257 -1.2254 -3.0471 21 6 -4.2585 0.0964 -2.8990 22 1 -3.4823 0.8444 -2.8322 23 6 -5.5942 0.4734 -2.8348 24 7 -6.5386 -0.4367 -2.9165 25 14 -6.0476 2.2743 -2.6323 26 1 -5.5100 3.0519 -3.7774 27 1 -7.5258 2.4110 -2.5922 28 1 -5.4677 2.7914 -1.3669 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8901 -0.5137 31 1 -0.3634 -0.8899 -0.5139 32 1 0.8607 -2.6184 0.5148 33 1 2.5396 -3.2094 0.5152 34 1 1.7687 -5.8082 -0.3220 35 1 0.6284 -4.6040 0.3248 36 1 0.0625 -5.8360 -0.8286 37 1 1.3283 -5.8091 -3.1131 38 1 1.6938 -4.1701 -3.7033 39 1 0.0748 -4.3665 -5.5611 40 1 -0.2693 -6.0385 -5.0570 41 1 -1.6017 -4.8732 -5.2426 42 1 -0.3787 -2.7758 -2.4912 43 1 -2.6899 -3.4231 -4.2022 44 1 -2.6588 -3.6149 -2.4329 45 1 -4.6227 -1.8972 -3.1074 46 1 -7.4711 -0.1735 -2.8713 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283692106.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:41 Heat of formation + Delta-G solvation = -0.306588 kcal Electronic energy + Delta-G solvation = -30705.954004 eV Core-core repulsion = 26441.323675 eV Total energy + Delta-G solvation = -4264.630329 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.68313 -41.15344 -40.03623 -37.99215 -36.14770 -35.77595 -35.62494 -34.51090 -33.22943 -32.26971 -30.66703 -29.72557 -28.31658 -27.92704 -26.71277 -25.66843 -23.70016 -22.19982 -21.37728 -21.04641 -20.23801 -19.84205 -18.39431 -18.15115 -17.85004 -17.38708 -17.08710 -16.84415 -16.46309 -16.35955 -16.04842 -15.52682 -15.49210 -15.32340 -15.02289 -14.62588 -14.32989 -14.21646 -14.13280 -13.88049 -13.65757 -13.46657 -13.39825 -13.22971 -13.16256 -12.96426 -12.88387 -12.86521 -12.66057 -12.58806 -12.41663 -12.36540 -12.14076 -12.11187 -11.90107 -11.69915 -11.45179 -10.93512 -10.25742 -9.95572 -9.67318 -9.19961 -8.42700 -5.89808 -0.61096 0.81475 1.40464 1.43440 1.45414 1.51365 1.52846 1.94048 2.07760 2.11289 2.31057 2.75635 2.98766 3.25556 3.37081 3.54318 3.61886 3.82501 3.94686 4.07831 4.22522 4.27074 4.30019 4.35345 4.42595 4.48855 4.51255 4.51825 4.57197 4.62462 4.64653 4.79453 4.92641 4.97195 5.04467 5.06583 5.12401 5.38747 5.45441 5.56239 5.77964 5.97282 6.20408 6.28601 6.52759 6.66240 7.09444 7.18447 7.62566 8.18658 8.74500 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008967 B = 0.004035 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3121.882991 B = 6937.731924 C = 9396.180096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.099 3.901 3 N -0.308 5.308 4 O -0.011 6.011 5 N -0.284 5.284 6 C 0.110 3.890 7 C -0.076 4.076 8 C 0.505 3.495 9 O -0.564 6.564 10 N -0.612 5.612 11 C 0.060 3.940 12 C 0.116 3.884 13 C 0.068 3.932 14 H 0.065 0.935 15 C -0.138 4.138 16 N -0.681 5.681 17 C 0.064 3.936 18 C 0.438 3.562 19 O -0.613 6.613 20 N -0.573 5.573 21 C -0.326 4.326 22 H 0.077 0.923 23 C -0.009 4.009 24 N -0.920 5.920 25 Si 0.984 3.016 26 H -0.279 1.279 27 H -0.272 1.272 28 H -0.269 1.269 29 H 0.133 0.867 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.167 0.833 33 H 0.163 0.837 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.123 0.877 38 H 0.064 0.936 39 H 0.042 0.958 40 H 0.088 0.912 41 H 0.051 0.949 42 H 0.341 0.659 43 H 0.096 0.904 44 H 0.068 0.932 45 H 0.395 0.605 46 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.033 -18.403 9.268 22.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 N -0.057 5.057 4 O -0.146 6.146 5 N -0.030 5.030 6 C -0.074 4.074 7 C -0.117 4.117 8 C 0.292 3.708 9 O -0.441 6.441 10 N -0.345 5.345 11 C -0.081 4.081 12 C -0.007 4.007 13 C -0.043 4.043 14 H 0.083 0.917 15 C -0.196 4.196 16 N -0.317 5.317 17 C -0.069 4.069 18 C 0.225 3.775 19 O -0.499 6.499 20 N -0.210 5.210 21 C -0.456 4.456 22 H 0.095 0.905 23 C -0.209 4.209 24 N -0.561 5.561 25 Si 0.808 3.192 26 H -0.205 1.205 27 H -0.196 1.196 28 H -0.194 1.194 29 H 0.151 0.849 30 H 0.089 0.911 31 H 0.110 0.890 32 H 0.185 0.815 33 H 0.180 0.820 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.141 0.859 38 H 0.082 0.918 39 H 0.061 0.939 40 H 0.107 0.893 41 H 0.070 0.930 42 H 0.162 0.838 43 H 0.114 0.886 44 H 0.086 0.914 45 H 0.229 0.771 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.832 -16.450 8.197 21.859 hybrid contribution -1.436 0.398 0.359 1.532 sum 10.397 -16.052 8.557 20.952 Atomic orbital electron populations 1.20627 0.82332 1.05428 1.05922 1.25018 1.01206 0.88765 0.93383 1.79930 0.88930 1.20704 1.16089 1.93328 1.21160 1.14298 1.85817 1.79763 1.18554 0.90919 1.13780 1.24312 0.89187 0.99213 0.94689 1.20711 1.07793 0.86946 0.96209 1.20603 0.77188 0.82271 0.90752 1.90880 1.50643 1.55153 1.47456 1.47913 1.65337 1.12710 1.08579 1.22302 1.03065 0.94436 0.88335 1.21746 0.95386 1.01751 0.81814 1.22050 0.96312 0.87826 0.98073 0.91692 1.21757 1.01780 1.01675 0.94424 1.60068 1.06273 1.17397 1.47919 1.21582 0.90348 0.92229 1.02703 1.20863 0.82535 0.91818 0.82296 1.90535 1.49029 1.54227 1.56069 1.41905 1.06167 1.08288 1.64686 1.19557 0.92362 0.84978 1.48678 0.90464 1.25888 0.94867 1.03420 0.96691 1.69656 1.00891 1.35057 1.50523 0.85118 0.77354 0.77817 0.78862 1.20452 1.19616 1.19422 0.84926 0.91085 0.88958 0.81521 0.81990 0.89810 0.88611 0.89325 0.85936 0.91768 0.93865 0.89344 0.93023 0.83775 0.88573 0.91396 0.77118 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.28 10.05 71.23 0.72 -1.56 16 2 C 0.10 2.96 7.19 43.49 0.31 3.28 16 3 N -0.31 -10.97 12.98 -47.16 -0.61 -11.58 16 4 O -0.01 -0.42 13.71 70.17 0.96 0.55 16 5 N -0.28 -8.86 12.98 -47.15 -0.61 -9.48 16 6 C 0.11 2.88 5.68 43.49 0.25 3.12 16 7 C -0.08 -1.15 4.36 29.10 0.13 -1.02 16 8 C 0.50 11.35 6.11 87.65 0.54 11.88 16 9 O -0.56 -19.99 14.83 -3.05 -0.05 -20.04 16 10 N -0.61 -9.17 2.53 -846.74 -2.14 -11.31 16 11 C 0.06 0.25 10.33 127.77 1.32 1.57 16 12 C 0.12 1.98 5.21 86.38 0.45 2.43 16 13 C 0.07 1.35 2.92 44.92 0.13 1.48 16 14 H 0.07 1.00 7.86 -2.39 -0.02 0.98 16 15 C -0.14 -2.64 9.34 71.98 0.67 -1.97 16 16 N -0.68 -21.10 5.92 -495.61 -2.93 -24.03 16 17 C 0.06 2.07 5.97 85.56 0.51 2.58 16 18 C 0.44 19.95 7.82 87.66 0.69 20.63 16 19 O -0.61 -32.84 15.78 -3.08 -0.05 -32.89 16 20 N -0.57 -28.13 5.29 -306.98 -1.62 -29.75 16 21 C -0.33 -17.94 9.68 84.04 0.81 -17.13 16 22 H 0.08 4.56 7.16 -2.91 -0.02 4.54 16 23 C -0.01 -0.46 5.50 84.92 0.47 0.00 16 24 N -0.92 -48.37 13.05 21.66 0.28 -48.08 16 25 Si 0.98 42.43 29.55 68.60 2.03 44.46 16 26 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 27 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 28 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 29 H 0.13 2.40 8.14 -2.38 -0.02 2.38 16 30 H 0.07 2.32 8.14 -2.38 -0.02 2.31 16 31 H 0.09 2.54 7.78 -2.39 -0.02 2.52 16 32 H 0.17 1.19 7.05 -2.39 -0.02 1.17 16 33 H 0.16 1.20 8.11 -2.39 -0.02 1.18 16 34 H 0.08 0.07 8.14 -2.38 -0.02 0.05 16 35 H 0.10 0.05 6.29 -2.39 -0.02 0.03 16 36 H 0.09 0.21 8.06 -2.39 -0.02 0.19 16 37 H 0.12 1.11 8.12 -2.39 -0.02 1.09 16 38 H 0.06 1.58 7.24 -2.38 -0.02 1.57 16 39 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.05 1.06 7.10 -2.39 -0.02 1.05 16 42 H 0.34 11.24 5.18 -89.69 -0.46 10.77 16 43 H 0.10 2.93 7.06 -2.39 -0.02 2.92 16 44 H 0.07 1.81 8.07 -2.39 -0.02 1.79 16 45 H 0.40 18.44 7.90 -92.71 -0.73 17.71 16 46 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 Total: -1.00 -84.17 390.06 2.09 -82.09 By element: Atomic # 1 Polarization: 34.93 SS G_CDS: -0.16 Total: 34.77 kcal Atomic # 6 Polarization: 18.31 SS G_CDS: 6.99 Total: 25.30 kcal Atomic # 7 Polarization: -126.60 SS G_CDS: -7.64 Total: -134.23 kcal Atomic # 8 Polarization: -53.25 SS G_CDS: 0.87 Total: -52.38 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -84.17 2.09 -82.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283692106.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.779 kcal (2) G-P(sol) polarization free energy of solvation -84.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds