Wall clock time and date at job start Tue Mar 31 2020 22:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30276 * 126.28250 * 2 1 4 4 N 1.28674 * 109.37873 * 179.97438 * 3 2 1 5 5 C 1.30272 * 109.38187 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.28028 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47433 * 89.97372 * 6 5 4 8 8 O 1.21290 * 119.99589 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00366 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99944 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46694 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47063 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.47399 * 179.97438 * 12 11 10 14 14 C 1.46895 * 110.99882 * 66.04355 * 13 12 11 15 15 C 1.46897 * 110.99904 * 190.00167 * 13 12 11 16 16 C 1.50701 * 109.47039 * 170.00080 * 15 13 12 17 17 O 1.21294 * 120.00015 * 0.02562 * 16 15 13 18 18 N 1.34777 * 120.00165 * 180.02562 * 16 15 13 19 19 C 1.37099 * 120.00099 * 180.02562 * 18 16 15 20 20 H 1.07999 * 119.99968 * 359.97438 * 19 18 16 21 21 C 1.38944 * 120.00181 * 180.02562 * 19 18 16 22 22 N 1.31417 * 119.99869 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00266 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47311 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47318 * 119.99545 * 23 21 19 26 26 H 1.48504 * 109.47307 * 239.99841 * 23 21 19 27 27 O 1.34364 * 107.43764 * 359.97438 * 5 4 3 28 28 H 1.08997 * 109.47444 * 90.01974 * 1 2 3 29 29 H 1.09002 * 109.46698 * 210.02579 * 1 2 3 30 30 H 1.09002 * 109.47090 * 330.01523 * 1 2 3 31 31 H 1.09006 * 109.47243 * 209.97514 * 6 5 4 32 32 H 1.09004 * 109.47210 * 329.97528 * 6 5 4 33 33 H 0.97002 * 119.99798 * 359.97438 * 9 7 6 34 34 H 1.08992 * 109.47261 * 299.99742 * 10 9 7 35 35 H 1.08998 * 109.47220 * 60.00528 * 10 9 7 36 36 H 1.09001 * 109.47552 * 299.99677 * 11 10 9 37 37 H 1.08997 * 109.47602 * 60.00101 * 11 10 9 38 38 H 1.08997 * 109.47309 * 300.00488 * 12 11 10 39 39 H 1.09004 * 109.46776 * 60.00020 * 12 11 10 40 40 H 1.09007 * 109.47071 * 60.00265 * 14 13 12 41 41 H 1.08999 * 109.47344 * 179.97438 * 14 13 12 42 42 H 1.08996 * 109.47629 * 300.00705 * 14 13 12 43 43 H 1.08998 * 109.47354 * 289.99757 * 15 13 12 44 44 H 1.09002 * 109.47475 * 49.99993 * 15 13 12 45 45 H 0.96997 * 120.00232 * 359.97438 * 18 16 15 46 46 H 0.97002 * 119.99662 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5091 0.6760 0.0005 5 6 3.5654 -0.6255 0.0004 6 6 4.8176 -1.4639 0.0014 7 6 5.2342 -1.7431 1.4225 8 8 4.5783 -1.3048 2.3438 9 7 6.3347 -2.4806 1.6696 10 6 6.7399 -2.7515 3.0512 11 6 8.0112 -3.6028 3.0522 12 6 8.4340 -3.8863 4.4950 13 7 9.6543 -4.7042 4.4960 14 6 10.7897 -3.9564 3.9396 15 6 9.9582 -5.1947 5.8470 16 6 11.0607 -6.2194 5.7731 17 8 11.5460 -6.5119 4.7007 18 7 11.5076 -6.8108 6.8988 19 6 12.5111 -7.7426 6.8316 20 1 12.9431 -8.0030 5.8767 21 6 12.9714 -8.3526 7.9920 22 7 12.4453 -8.0361 9.1539 23 14 14.3381 -9.6227 7.9005 24 1 14.7557 -9.7996 6.4864 25 1 15.4975 -9.1612 8.7054 26 1 13.8472 -10.9176 8.4368 27 8 2.3021 -1.0832 0.0002 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3633 -0.8898 0.5143 30 1 -0.3633 0.8901 0.5136 31 1 4.6248 -2.4057 -0.5124 32 1 5.6151 -0.9265 -0.5120 33 1 6.8586 -2.8320 0.9328 34 1 6.9334 -1.8097 3.5645 35 1 5.9424 -3.2882 3.5651 36 1 7.8182 -4.5448 2.5389 37 1 8.8085 -3.0658 2.5384 38 1 8.6269 -2.9446 5.0089 39 1 7.6365 -4.4236 5.0084 40 1 10.9665 -3.0641 4.5404 41 1 11.6801 -4.5849 3.9526 42 1 10.5651 -3.6649 2.9137 43 1 10.2779 -4.3615 6.4727 44 1 9.0665 -5.6508 6.2771 45 1 11.1198 -6.5766 7.7565 46 1 12.7669 -8.4618 9.9640 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316822887.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:21 Heat of formation + Delta-G solvation = -29.302042 kcal Electronic energy + Delta-G solvation = -27547.849622 eV Core-core repulsion = 23281.961955 eV Total energy + Delta-G solvation = -4265.887666 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.62040 -40.17667 -38.70177 -37.01762 -36.55218 -35.40686 -34.10154 -33.87672 -32.17888 -31.27099 -30.99069 -28.06482 -27.71473 -26.35800 -24.79415 -23.55925 -23.00050 -22.57158 -21.37008 -20.56650 -19.16885 -18.24527 -17.85055 -17.65442 -17.08035 -16.69368 -16.38889 -15.97728 -15.63622 -15.13355 -15.04734 -14.84896 -14.62001 -14.45894 -14.17527 -13.75970 -13.68065 -13.52581 -13.39650 -13.31705 -12.97113 -12.75972 -12.34084 -12.23474 -12.16413 -11.93292 -11.77300 -11.49804 -11.36555 -11.28807 -11.27338 -10.94983 -10.78944 -10.55364 -10.35176 -10.23462 -9.87090 -9.52770 -9.49669 -8.47496 -7.99176 -7.87822 -6.42754 -3.83583 0.69040 1.72635 1.96198 2.07978 2.69824 3.15349 3.26056 3.30095 3.33000 3.87264 3.89039 3.94410 4.13746 4.22683 4.26399 4.48994 4.72285 4.74097 4.76506 4.85259 4.90427 4.98447 5.06118 5.06350 5.11215 5.24156 5.33450 5.34484 5.43822 5.54382 5.66207 5.71189 5.86065 5.91302 5.95691 5.99846 6.06661 6.27172 6.52959 6.95177 7.23387 7.35982 7.54439 7.66941 7.89846 8.05667 8.60841 9.17279 9.53644 10.05310 10.75062 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.042664 B = 0.001310 C = 0.001297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.131322 B =21372.720438 C =21585.748273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.166 3.834 3 N -0.289 5.289 4 N -0.272 5.272 5 C 0.181 3.819 6 C -0.046 4.046 7 C 0.517 3.483 8 O -0.529 6.529 9 N -0.722 5.722 10 C 0.120 3.880 11 C -0.127 4.127 12 C 0.057 3.943 13 N -0.519 5.519 14 C 0.020 3.980 15 C 0.046 3.954 16 C 0.444 3.556 17 O -0.578 6.578 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 O -0.221 6.221 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.130 0.870 32 H 0.143 0.857 33 H 0.405 0.595 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.033 0.967 39 H 0.076 0.924 40 H 0.014 0.986 41 H 0.095 0.905 42 H 0.060 0.940 43 H 0.048 0.952 44 H 0.088 0.912 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.472 13.677 -17.647 30.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.044 4.044 3 N -0.136 5.136 4 N -0.119 5.119 5 C -0.030 4.030 6 C -0.088 4.088 7 C 0.301 3.699 8 O -0.405 6.405 9 N -0.374 5.374 10 C -0.004 4.004 11 C -0.166 4.166 12 C -0.072 4.072 13 N -0.243 5.243 14 C -0.128 4.128 15 C -0.086 4.086 16 C 0.229 3.771 17 O -0.463 6.463 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 O -0.100 6.100 28 H 0.118 0.882 29 H 0.113 0.887 30 H 0.126 0.874 31 H 0.148 0.852 32 H 0.161 0.839 33 H 0.240 0.760 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.052 0.948 39 H 0.094 0.906 40 H 0.032 0.968 41 H 0.114 0.886 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.106 0.894 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.277 14.544 -17.789 30.646 hybrid contribution 0.489 -1.189 0.875 1.555 sum -19.788 13.355 -16.914 29.258 Atomic orbital electron populations 1.20385 0.80034 1.05961 1.05272 1.28029 0.97864 0.79488 0.99065 1.74403 0.95940 1.25575 1.17690 1.74363 1.12417 1.08892 1.16207 1.26806 0.84721 0.91296 1.00203 1.20095 0.90311 1.00849 0.97500 1.20020 0.81085 0.78684 0.90117 1.90799 1.53190 1.50524 1.45973 1.45871 1.27739 1.53862 1.09917 1.21407 0.97059 1.00124 0.81769 1.21781 0.95881 1.00457 0.98444 1.22002 0.93558 0.96017 0.95588 1.61547 1.03371 1.37842 1.21499 1.22579 0.95638 0.96183 0.98381 1.21865 0.99432 0.97746 0.89528 1.19737 0.86413 0.85818 0.85106 1.90479 1.61038 1.66264 1.28478 1.41877 1.33823 1.36827 1.07576 1.19748 1.11989 1.15789 0.95288 0.87855 1.25258 0.99089 0.98924 0.94669 1.69624 1.42887 1.43665 0.98136 0.85807 0.80169 0.79829 0.78575 1.19215 1.20785 1.20761 1.84749 1.17348 1.38363 1.69526 0.88195 0.88731 0.87386 0.85157 0.83898 0.75997 0.91203 0.91014 0.90033 0.90930 0.94832 0.90578 0.96781 0.88607 0.92100 0.93433 0.89373 0.77493 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.20 10.51 36.00 0.38 0.17 16 2 C 0.17 1.49 8.48 -12.94 -0.11 1.38 16 3 N -0.29 -3.47 12.22 32.55 0.40 -3.07 16 4 N -0.27 -3.40 12.22 32.55 0.40 -3.00 16 5 C 0.18 1.79 6.97 -12.94 -0.09 1.70 16 6 C -0.05 -0.25 6.33 -29.04 -0.18 -0.44 16 7 C 0.52 4.52 7.82 -10.99 -0.09 4.44 16 8 O -0.53 -7.34 16.03 5.55 0.09 -7.25 16 9 N -0.72 -4.77 5.56 -60.30 -0.33 -5.10 16 10 C 0.12 1.00 5.67 -4.04 -0.02 0.98 16 11 C -0.13 -1.12 5.25 -26.73 -0.14 -1.26 16 12 C 0.06 0.66 4.96 -3.82 -0.02 0.64 16 13 N -0.52 -8.15 4.50 -244.37 -1.10 -9.25 16 14 C 0.02 0.31 8.96 60.06 0.54 0.84 16 15 C 0.05 0.79 5.45 -4.98 -0.03 0.77 16 16 C 0.44 10.28 7.48 -10.98 -0.08 10.20 16 17 O -0.58 -15.23 13.91 5.54 0.08 -15.16 16 18 N -0.56 -14.12 5.29 -10.96 -0.06 -14.18 16 19 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 20 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.37 13.05 55.50 0.72 -23.65 16 23 Si 0.93 20.85 29.55 -169.99 -5.02 15.82 16 24 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 O -0.22 -2.14 10.87 5.37 0.06 -2.09 16 28 H 0.10 0.15 8.14 -51.93 -0.42 -0.28 16 29 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.11 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.13 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.14 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.41 1.39 8.47 -40.82 -0.35 1.05 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.61 6.55 -51.93 -0.34 0.27 16 38 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 39 H 0.08 0.83 7.93 -51.93 -0.41 0.42 16 40 H 0.01 0.20 8.14 -51.92 -0.42 -0.23 16 41 H 0.10 1.83 5.82 -51.93 -0.30 1.53 16 42 H 0.06 0.78 6.47 -51.93 -0.34 0.44 16 43 H 0.05 0.77 8.12 -51.93 -0.42 0.34 16 44 H 0.09 1.39 7.93 -51.93 -0.41 0.97 16 45 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 46 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 393.66 15.07 5.93 5.93 Total: -1.00 -38.22 393.66 -5.55 -43.77 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -6.63 Total: 5.68 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: -0.09 Total: 11.54 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: 0.03 Total: -58.25 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: 0.22 Total: -24.50 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -38.22 -5.55 -43.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316822887.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.470 kcal (2) G-P(sol) polarization free energy of solvation -38.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds