Wall clock time and date at job start Tue Mar 31 2020 22:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30276 * 126.28250 * 2 1 4 4 N 1.28674 * 109.37873 * 179.97438 * 3 2 1 5 5 C 1.30272 * 109.38187 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.28028 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47433 * 89.97372 * 6 5 4 8 8 O 1.21290 * 119.99589 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00366 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99944 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46694 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47063 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.47399 * 179.97438 * 12 11 10 14 14 C 1.46895 * 110.99882 * 66.04355 * 13 12 11 15 15 C 1.46897 * 110.99904 * 190.00167 * 13 12 11 16 16 C 1.50701 * 109.47039 * 170.00080 * 15 13 12 17 17 O 1.21294 * 120.00015 * 0.02562 * 16 15 13 18 18 N 1.34777 * 120.00165 * 180.02562 * 16 15 13 19 19 C 1.37099 * 120.00099 * 180.02562 * 18 16 15 20 20 H 1.07999 * 119.99968 * 359.97438 * 19 18 16 21 21 C 1.38944 * 120.00181 * 180.02562 * 19 18 16 22 22 N 1.31417 * 119.99869 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00266 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47311 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47318 * 119.99545 * 23 21 19 26 26 H 1.48504 * 109.47307 * 239.99841 * 23 21 19 27 27 O 1.34364 * 107.43764 * 359.97438 * 5 4 3 28 28 H 1.08997 * 109.47444 * 90.01974 * 1 2 3 29 29 H 1.09002 * 109.46698 * 210.02579 * 1 2 3 30 30 H 1.09002 * 109.47090 * 330.01523 * 1 2 3 31 31 H 1.09006 * 109.47243 * 209.97514 * 6 5 4 32 32 H 1.09004 * 109.47210 * 329.97528 * 6 5 4 33 33 H 0.97002 * 119.99798 * 359.97438 * 9 7 6 34 34 H 1.08992 * 109.47261 * 299.99742 * 10 9 7 35 35 H 1.08998 * 109.47220 * 60.00528 * 10 9 7 36 36 H 1.09001 * 109.47552 * 299.99677 * 11 10 9 37 37 H 1.08997 * 109.47602 * 60.00101 * 11 10 9 38 38 H 1.08997 * 109.47309 * 300.00488 * 12 11 10 39 39 H 1.09004 * 109.46776 * 60.00020 * 12 11 10 40 40 H 1.09007 * 109.47071 * 60.00265 * 14 13 12 41 41 H 1.08999 * 109.47344 * 179.97438 * 14 13 12 42 42 H 1.08996 * 109.47629 * 300.00705 * 14 13 12 43 43 H 1.08998 * 109.47354 * 289.99757 * 15 13 12 44 44 H 1.09002 * 109.47475 * 49.99993 * 15 13 12 45 45 H 0.96997 * 120.00232 * 359.97438 * 18 16 15 46 46 H 0.97002 * 119.99662 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5091 0.6760 0.0005 5 6 3.5654 -0.6255 0.0004 6 6 4.8176 -1.4639 0.0014 7 6 5.2342 -1.7431 1.4225 8 8 4.5783 -1.3048 2.3438 9 7 6.3347 -2.4806 1.6696 10 6 6.7399 -2.7515 3.0512 11 6 8.0112 -3.6028 3.0522 12 6 8.4340 -3.8863 4.4950 13 7 9.6543 -4.7042 4.4960 14 6 10.7897 -3.9564 3.9396 15 6 9.9582 -5.1947 5.8470 16 6 11.0607 -6.2194 5.7731 17 8 11.5460 -6.5119 4.7007 18 7 11.5076 -6.8108 6.8988 19 6 12.5111 -7.7426 6.8316 20 1 12.9431 -8.0030 5.8767 21 6 12.9714 -8.3526 7.9920 22 7 12.4453 -8.0361 9.1539 23 14 14.3381 -9.6227 7.9005 24 1 14.7557 -9.7996 6.4864 25 1 15.4975 -9.1612 8.7054 26 1 13.8472 -10.9176 8.4368 27 8 2.3021 -1.0832 0.0002 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3633 -0.8898 0.5143 30 1 -0.3633 0.8901 0.5136 31 1 4.6248 -2.4057 -0.5124 32 1 5.6151 -0.9265 -0.5120 33 1 6.8586 -2.8320 0.9328 34 1 6.9334 -1.8097 3.5645 35 1 5.9424 -3.2882 3.5651 36 1 7.8182 -4.5448 2.5389 37 1 8.8085 -3.0658 2.5384 38 1 8.6269 -2.9446 5.0089 39 1 7.6365 -4.4236 5.0084 40 1 10.9665 -3.0641 4.5404 41 1 11.6801 -4.5849 3.9526 42 1 10.5651 -3.6649 2.9137 43 1 10.2779 -4.3615 6.4727 44 1 9.0665 -5.6508 6.2771 45 1 11.1198 -6.5766 7.7565 46 1 12.7669 -8.4618 9.9640 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316822887.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:20 Heat of formation + Delta-G solvation = -64.988828 kcal Electronic energy + Delta-G solvation = -27549.397117 eV Core-core repulsion = 23281.961955 eV Total energy + Delta-G solvation = -4267.435162 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.31219 -40.88506 -40.35270 -38.28255 -37.27852 -36.34498 -35.78539 -34.68726 -33.28109 -32.89952 -31.60548 -29.37222 -28.48396 -27.40704 -26.47424 -24.46367 -23.73937 -23.40211 -22.16029 -21.38904 -20.95828 -19.83895 -18.91375 -18.32980 -17.86012 -17.72430 -17.28369 -17.04620 -16.57335 -16.56207 -16.26538 -15.91044 -15.68887 -15.45907 -15.28419 -14.97503 -14.87041 -14.65785 -13.98778 -13.73938 -13.66728 -13.54778 -13.50897 -13.46836 -13.19829 -13.01469 -12.98832 -12.81086 -12.70695 -12.49478 -12.37139 -12.30865 -12.10165 -12.04749 -11.63071 -11.44797 -11.31677 -10.55551 -10.26158 -10.19120 -9.98192 -9.18547 -8.45248 -5.93705 0.04359 1.14731 1.26766 1.37466 1.42751 1.44541 1.56754 2.07491 2.08719 2.30171 2.76623 2.83466 3.21976 3.36368 3.44706 3.62709 3.81822 3.98584 4.05068 4.11782 4.15924 4.32974 4.33108 4.39974 4.42048 4.50514 4.55494 4.56316 4.57154 4.62645 4.66559 4.69954 4.77936 4.81690 5.03152 5.10389 5.21610 5.28075 5.38756 5.43093 5.90163 6.09038 6.24753 6.42041 6.62537 7.10441 7.14956 7.18507 7.58741 8.14451 8.72435 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.042664 B = 0.001310 C = 0.001297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.131322 B =21372.720438 C =21585.748273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.172 3.828 3 N -0.333 5.333 4 N -0.313 5.313 5 C 0.179 3.821 6 C -0.040 4.040 7 C 0.516 3.484 8 O -0.588 6.588 9 N -0.706 5.706 10 C 0.127 3.873 11 C -0.113 4.113 12 C 0.056 3.944 13 N -0.536 5.536 14 C 0.024 3.976 15 C 0.056 3.944 16 C 0.441 3.559 17 O -0.613 6.613 18 N -0.576 5.576 19 C -0.331 4.331 20 H 0.080 0.920 21 C -0.013 4.013 22 N -0.922 5.922 23 Si 0.992 3.008 24 H -0.272 1.272 25 H -0.272 1.272 26 H -0.272 1.272 27 O -0.228 6.228 28 H 0.125 0.875 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.173 0.827 32 H 0.174 0.826 33 H 0.424 0.576 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.043 0.957 39 H 0.082 0.918 40 H 0.026 0.974 41 H 0.053 0.947 42 H 0.087 0.913 43 H 0.065 0.935 44 H 0.109 0.891 45 H 0.395 0.605 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.289 13.366 -18.637 31.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.039 4.039 3 N -0.180 5.180 4 N -0.159 5.159 5 C -0.034 4.034 6 C -0.080 4.080 7 C 0.302 3.698 8 O -0.468 6.468 9 N -0.358 5.358 10 C 0.003 3.997 11 C -0.151 4.151 12 C -0.072 4.072 13 N -0.260 5.260 14 C -0.123 4.123 15 C -0.075 4.075 16 C 0.229 3.771 17 O -0.499 6.499 18 N -0.213 5.213 19 C -0.461 4.461 20 H 0.098 0.902 21 C -0.213 4.213 22 N -0.563 5.563 23 Si 0.816 3.184 24 H -0.197 1.197 25 H -0.197 1.197 26 H -0.197 1.197 27 O -0.108 6.108 28 H 0.143 0.857 29 H 0.130 0.870 30 H 0.135 0.865 31 H 0.190 0.810 32 H 0.191 0.809 33 H 0.262 0.738 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.061 0.939 39 H 0.101 0.899 40 H 0.044 0.956 41 H 0.071 0.929 42 H 0.105 0.895 43 H 0.083 0.917 44 H 0.127 0.873 45 H 0.229 0.771 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.084 14.250 -18.803 31.641 hybrid contribution 0.685 -1.072 1.146 1.712 sum -20.399 13.177 -17.658 30.026 Atomic orbital electron populations 1.20739 0.76514 1.07181 1.07206 1.29063 0.99491 0.78716 0.96650 1.74309 0.96392 1.27209 1.20070 1.74254 1.13087 1.10525 1.17998 1.27586 0.85845 0.91172 0.98775 1.20385 0.89301 1.02633 0.95688 1.20535 0.80661 0.77759 0.90850 1.90781 1.55106 1.52944 1.47964 1.45714 1.27243 1.52943 1.09941 1.21211 0.96521 0.99398 0.82612 1.21625 0.96127 1.00603 0.96769 1.22106 0.91689 0.95822 0.97608 1.61520 1.04730 1.39433 1.20323 1.22472 0.94069 0.95505 1.00297 1.21744 0.97806 0.96632 0.91308 1.20791 0.86681 0.85715 0.83931 1.90457 1.62349 1.67418 1.29698 1.41955 1.33924 1.37119 1.08340 1.19701 1.13748 1.17740 0.94862 0.90235 1.26019 1.00921 1.00297 0.94041 1.69685 1.43728 1.44338 0.98575 0.84880 0.77574 0.77653 0.78291 1.19680 1.19723 1.19720 1.84772 1.17587 1.38673 1.69793 0.85692 0.86996 0.86544 0.81004 0.80882 0.73813 0.92143 0.91859 0.89943 0.90053 0.93899 0.89911 0.95598 0.92865 0.89476 0.91731 0.87322 0.77107 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.31 10.51 71.24 0.75 0.44 16 2 C 0.17 3.00 8.48 88.34 0.75 3.75 16 3 N -0.33 -8.19 12.22 -165.50 -2.02 -10.21 16 4 N -0.31 -7.92 12.22 -165.50 -2.02 -9.94 16 5 C 0.18 3.39 6.97 88.34 0.62 4.00 16 6 C -0.04 -0.34 6.33 29.10 0.18 -0.15 16 7 C 0.52 8.20 7.82 87.66 0.69 8.89 16 8 O -0.59 -16.25 16.03 -3.06 -0.05 -16.30 16 9 N -0.71 -7.60 5.56 -463.07 -2.57 -10.17 16 10 C 0.13 1.87 5.67 86.38 0.49 2.36 16 11 C -0.11 -1.69 5.25 30.59 0.16 -1.53 16 12 C 0.06 1.14 4.96 86.30 0.43 1.57 16 13 N -0.54 -15.96 4.50 -927.05 -4.17 -20.13 16 14 C 0.02 0.72 8.96 127.69 1.14 1.86 16 15 C 0.06 1.90 5.45 85.56 0.47 2.36 16 16 C 0.44 20.67 7.48 87.66 0.66 21.33 16 17 O -0.61 -33.09 13.91 -3.07 -0.04 -33.13 16 18 N -0.58 -29.32 5.29 -306.98 -1.62 -30.95 16 19 C -0.33 -18.66 9.68 84.04 0.81 -17.85 16 20 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 21 C -0.01 -0.71 5.50 84.92 0.47 -0.24 16 22 N -0.92 -49.65 13.05 21.66 0.28 -49.37 16 23 Si 0.99 42.68 29.55 68.60 2.03 44.71 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 25 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 27 O -0.23 -4.26 10.87 -3.71 -0.04 -4.30 16 28 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 29 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.17 -0.02 8.14 -2.38 -0.02 -0.04 16 32 H 0.17 0.39 8.14 -2.38 -0.02 0.37 16 33 H 0.42 1.46 8.47 -92.71 -0.79 0.67 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.10 6.55 -2.39 -0.02 1.09 16 38 H 0.04 0.83 8.12 -2.39 -0.02 0.81 16 39 H 0.08 1.60 7.93 -2.38 -0.02 1.59 16 40 H 0.03 0.68 8.14 -2.38 -0.02 0.66 16 41 H 0.05 2.04 5.82 -2.39 -0.01 2.03 16 42 H 0.09 2.04 6.47 -2.39 -0.02 2.03 16 43 H 0.06 1.97 8.12 -2.39 -0.02 1.95 16 44 H 0.11 3.22 7.93 -2.39 -0.02 3.20 16 45 H 0.40 19.19 7.90 -92.71 -0.73 18.45 16 46 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -87.27 393.66 -3.11 -90.38 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: -0.48 Total: 22.62 kcal Atomic # 6 Polarization: 19.18 SS G_CDS: 7.61 Total: 26.79 kcal Atomic # 7 Polarization: -118.64 SS G_CDS: -12.13 Total: -130.77 kcal Atomic # 8 Polarization: -53.59 SS G_CDS: -0.13 Total: -53.73 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -87.27 -3.11 -90.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316822887.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.388 kcal (2) G-P(sol) polarization free energy of solvation -87.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds