Wall clock time and date at job start Tue Mar 31 2020 22:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29946 * 125.30567 * 2 1 4 4 O 1.41876 * 107.41569 * 179.97438 * 3 2 1 5 5 N 1.41872 * 106.38689 * 359.77924 * 4 3 2 6 6 C 1.29952 * 107.41456 * 0.36966 * 5 4 3 7 7 C 1.50703 * 125.30566 * 179.89323 * 6 5 4 8 8 C 1.50701 * 109.47064 * 269.69197 * 7 6 5 9 9 O 1.21280 * 119.99781 * 359.97438 * 8 7 6 10 10 N 1.34771 * 119.99622 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99622 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47212 * 179.97438 * 11 10 8 13 13 C 1.52992 * 109.47482 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.46906 * 55.00224 * 13 12 11 15 15 C 1.52998 * 109.47705 * 174.99884 * 13 12 11 16 16 N 1.46898 * 109.47092 * 295.00148 * 13 12 11 17 17 C 1.46905 * 110.99865 * 155.00007 * 16 13 12 18 18 C 1.50701 * 109.46951 * 179.97438 * 17 16 13 19 19 O 1.21294 * 120.00148 * 0.02562 * 18 17 16 20 20 N 1.34782 * 120.00062 * 179.97438 * 18 17 16 21 21 C 1.37095 * 119.99889 * 179.97438 * 20 18 17 22 22 H 1.07994 * 120.00089 * 0.02562 * 21 20 18 23 23 C 1.38955 * 119.99695 * 180.02562 * 21 20 18 24 24 N 1.31406 * 119.99698 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99938 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47194 * 90.00157 * 25 23 21 27 27 H 1.48501 * 109.46712 * 209.99984 * 25 23 21 28 28 H 1.48500 * 109.47307 * 329.99590 * 25 23 21 29 29 H 1.08993 * 109.47450 * 270.00637 * 1 2 3 30 30 H 1.09004 * 109.47144 * 30.00689 * 1 2 3 31 31 H 1.08999 * 109.46731 * 150.00168 * 1 2 3 32 32 H 1.09001 * 109.46980 * 149.69004 * 7 6 5 33 33 H 1.09002 * 109.47152 * 29.69104 * 7 6 5 34 34 H 0.96996 * 120.00772 * 359.97438 * 10 8 7 35 35 H 1.09002 * 109.47068 * 299.99729 * 11 10 8 36 36 H 1.09001 * 109.47372 * 59.99816 * 11 10 8 37 37 H 1.09002 * 109.47153 * 300.00008 * 12 11 10 38 38 H 1.08998 * 109.47533 * 59.99637 * 12 11 10 39 39 H 1.09001 * 109.46974 * 300.00556 * 15 13 12 40 40 H 1.09000 * 109.46929 * 59.99736 * 15 13 12 41 41 H 1.09000 * 109.47812 * 179.97438 * 15 13 12 42 42 H 1.00895 * 111.00265 * 278.94995 * 16 13 12 43 43 H 1.09003 * 109.46905 * 299.99465 * 17 16 13 44 44 H 1.08999 * 109.47700 * 60.00069 * 17 16 13 45 45 H 0.96999 * 119.99748 * 0.02562 * 20 18 17 46 46 H 0.97008 * 119.99966 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6082 0.6246 0.0006 5 7 3.5709 -0.7936 0.0062 6 6 2.3212 -1.1499 0.0006 7 6 1.8208 -2.5714 0.0013 8 6 1.6541 -3.0460 -1.4193 9 8 1.9154 -2.3028 -2.3414 10 7 1.2136 -4.2958 -1.6648 11 6 1.0510 -4.7569 -3.0459 12 6 0.5431 -6.2001 -3.0452 13 6 0.3727 -6.6815 -4.4873 14 1 1.3106 -6.5512 -5.0271 15 6 -0.0149 -8.1616 -4.4886 16 7 -0.6829 -5.8984 -5.1435 17 6 -0.4969 -5.8811 -6.6006 18 6 -1.5962 -5.0708 -7.2377 19 8 -2.4503 -4.5577 -6.5459 20 7 -1.6298 -4.9153 -8.5761 21 6 -2.6302 -4.1785 -9.1556 22 1 -3.3911 -3.7224 -8.5398 23 6 -2.6651 -4.0187 -10.5355 24 7 -3.6237 -3.3121 -11.0910 25 14 -1.3493 -4.8082 -11.6008 26 1 -1.7852 -6.1714 -11.9969 27 1 -1.1367 -3.9834 -12.8172 28 1 -0.0801 -4.8973 -10.8351 29 1 -0.3634 0.0001 1.0276 30 1 -0.3634 0.8900 -0.5140 31 1 -0.3633 -0.8900 -0.5138 32 1 0.8607 -2.6183 0.5152 33 1 2.5397 -3.2094 0.5155 34 1 1.0043 -4.8900 -0.9273 35 1 0.3322 -4.1187 -3.5598 36 1 2.0110 -4.7102 -3.5600 37 1 1.2622 -6.8381 -2.5314 38 1 -0.4168 -6.2473 -2.5310 39 1 0.7683 -8.7427 -4.0017 40 1 -0.9528 -8.2920 -3.9488 41 1 -0.1368 -8.5045 -5.5161 42 1 -1.5973 -6.2484 -4.8999 43 1 0.4686 -5.4345 -6.8383 44 1 -0.5295 -6.9012 -6.9833 45 1 -0.9466 -5.3252 -9.1292 46 1 -3.6483 -3.2008 -12.0544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317410717.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:45 Heat of formation + Delta-G solvation = 15.749915 kcal Electronic energy + Delta-G solvation = -28388.060996 eV Core-core repulsion = 24124.126929 eV Total energy + Delta-G solvation = -4263.934067 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.85629 -39.93108 -38.67477 -37.29385 -35.14036 -34.83481 -33.96212 -33.74244 -31.88425 -31.55597 -30.24656 -29.10081 -28.50895 -26.53099 -24.17747 -23.50433 -22.64702 -21.46394 -21.04765 -20.35768 -19.38622 -18.37224 -17.68439 -17.32330 -16.35620 -16.15845 -16.10296 -15.87497 -15.56292 -15.12122 -14.86373 -14.62087 -14.55359 -14.16381 -14.02425 -13.78224 -13.73973 -13.37069 -13.24566 -13.18596 -12.86251 -12.74345 -12.40906 -12.24193 -12.07351 -12.01250 -11.94809 -11.70630 -11.49031 -11.36994 -11.26789 -11.16844 -11.00571 -10.92292 -10.59893 -10.21807 -9.97908 -9.57633 -9.31990 -8.61593 -8.20857 -8.15284 -6.31406 -3.82778 0.23001 1.57350 2.23959 2.29891 2.73374 2.92786 3.02871 3.06058 3.15001 3.48245 3.73396 4.03225 4.08563 4.10422 4.36583 4.39454 4.56331 4.63548 4.78544 4.81094 4.88933 4.93952 4.97420 5.02231 5.18567 5.21188 5.25681 5.27073 5.42060 5.49739 5.53318 5.62156 5.66658 5.81417 5.88841 5.95145 6.00201 6.08496 6.18870 6.60608 7.04838 7.12489 7.53016 7.57847 7.85483 8.14124 8.59228 8.94631 9.42124 9.82051 10.81724 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011154 B = 0.002127 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.810502 B =13159.600455 C =14732.092197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.087 3.913 3 N -0.277 5.277 4 O 0.027 5.973 5 N -0.264 5.264 6 C 0.096 3.904 7 C -0.081 4.081 8 C 0.514 3.486 9 O -0.524 6.524 10 N -0.725 5.725 11 C 0.121 3.879 12 C -0.115 4.115 13 C 0.084 3.916 14 H 0.080 0.920 15 C -0.183 4.183 16 N -0.663 5.663 17 C 0.047 3.953 18 C 0.450 3.550 19 O -0.565 6.565 20 N -0.591 5.591 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.130 0.870 33 H 0.125 0.875 34 H 0.400 0.600 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.352 0.648 43 H 0.087 0.913 44 H 0.045 0.955 45 H 0.370 0.630 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.762 -7.676 24.681 27.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.095 4.095 3 N -0.022 5.022 4 O -0.114 6.114 5 N -0.006 5.006 6 C -0.088 4.088 7 C -0.122 4.122 8 C 0.297 3.703 9 O -0.399 6.399 10 N -0.377 5.377 11 C -0.002 4.002 12 C -0.153 4.153 13 C -0.027 4.027 14 H 0.098 0.902 15 C -0.242 4.242 16 N -0.295 5.295 17 C -0.085 4.085 18 C 0.235 3.765 19 O -0.447 6.447 20 N -0.230 5.230 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.201 1.201 28 H -0.195 1.195 29 H 0.116 0.884 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.148 0.852 33 H 0.143 0.857 34 H 0.234 0.766 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.172 0.828 43 H 0.105 0.895 44 H 0.063 0.937 45 H 0.203 0.797 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.780 -5.232 24.355 27.555 hybrid contribution 0.107 -2.231 -1.048 2.467 sum 11.887 -7.463 23.307 27.207 Atomic orbital electron populations 1.20609 0.84061 1.05976 1.04620 1.24541 1.00405 0.88746 0.95823 1.79940 0.88968 1.19530 1.13767 1.93393 1.20331 1.13107 1.84563 1.79875 1.17369 0.91653 1.11739 1.23745 0.90104 0.97687 0.97232 1.20357 1.05135 0.89288 0.97400 1.20015 0.77897 0.82339 0.90031 1.90834 1.48896 1.54357 1.45821 1.45952 1.67749 1.13939 1.10011 1.21458 1.01987 0.95627 0.81087 1.21745 1.01625 0.94985 0.96990 1.21508 0.96186 0.90521 0.94493 0.90206 1.22514 1.02020 0.97355 1.02317 1.60199 1.06101 1.56302 1.06904 1.21739 0.99552 0.98577 0.88665 1.19713 0.88169 0.86045 0.82545 1.90562 1.40858 1.51592 1.61695 1.42215 1.26660 1.48234 1.05900 1.19426 1.05122 1.27371 0.91432 0.86287 1.25043 0.97280 0.97280 0.96578 1.69621 1.31901 1.38998 1.11589 0.86673 0.81604 0.79996 0.81136 1.19684 1.20150 1.19453 0.88423 0.88781 0.88715 0.85227 0.85731 0.76633 0.88983 0.91844 0.91385 0.90930 0.92153 0.92186 0.92369 0.82830 0.89490 0.93721 0.79711 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.54 10.05 36.01 0.36 -0.17 16 2 C 0.09 0.85 7.19 -82.38 -0.59 0.26 16 3 N -0.28 -3.48 12.98 33.74 0.44 -3.04 16 4 O 0.03 0.38 13.71 12.03 0.16 0.55 16 5 N -0.26 -3.30 12.98 33.74 0.44 -2.87 16 6 C 0.10 0.93 5.68 -82.38 -0.47 0.46 16 7 C -0.08 -0.43 5.87 -29.03 -0.17 -0.60 16 8 C 0.51 4.81 7.82 -10.99 -0.09 4.72 16 9 O -0.52 -7.94 16.03 5.56 0.09 -7.85 16 10 N -0.72 -5.12 5.56 -60.29 -0.33 -5.45 16 11 C 0.12 1.18 5.56 -4.04 -0.02 1.16 16 12 C -0.11 -0.84 5.00 -26.74 -0.13 -0.98 16 13 C 0.08 0.79 2.59 -67.72 -0.18 0.61 16 14 H 0.08 0.75 7.80 -51.93 -0.40 0.35 16 15 C -0.18 -1.46 9.16 37.16 0.34 -1.12 16 16 N -0.66 -9.01 5.33 -107.99 -0.58 -9.58 16 17 C 0.05 0.74 5.97 -4.97 -0.03 0.71 16 18 C 0.45 9.98 7.82 -10.98 -0.09 9.90 16 19 O -0.57 -14.86 15.78 5.55 0.09 -14.77 16 20 N -0.59 -13.98 5.09 -10.96 -0.06 -14.04 16 21 C -0.30 -8.62 10.16 -14.93 -0.15 -8.77 16 22 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.81 13.96 55.50 0.77 -25.04 16 25 Si 0.88 19.41 27.74 -169.99 -4.71 14.69 16 26 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 29 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.46 7.78 -51.93 -0.40 0.05 16 32 H 0.13 0.17 7.77 -51.93 -0.40 -0.24 16 33 H 0.12 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.40 1.26 8.47 -40.82 -0.35 0.91 16 35 H 0.09 1.24 7.75 -51.93 -0.40 0.84 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 41 H 0.06 0.51 7.45 -51.93 -0.39 0.12 16 42 H 0.35 5.00 8.17 -39.29 -0.32 4.68 16 43 H 0.09 1.25 8.06 -51.93 -0.42 0.84 16 44 H 0.04 0.60 7.44 -51.93 -0.39 0.22 16 45 H 0.37 7.69 5.76 -40.82 -0.24 7.46 16 46 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 395.52 15.07 5.96 5.96 Total: -1.00 -38.78 395.52 -5.68 -44.46 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -6.65 Total: 9.77 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -1.31 Total: 7.21 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: 0.68 Total: -60.01 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: 0.34 Total: -22.07 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.71 Total: 14.69 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -38.78 -5.68 -44.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317410717.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.211 kcal (2) G-P(sol) polarization free energy of solvation -38.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds