Wall clock time and date at job start Tue Mar 31 2020 22:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29946 * 125.30567 * 2 1 4 4 O 1.41876 * 107.41569 * 179.97438 * 3 2 1 5 5 N 1.41872 * 106.38689 * 359.77924 * 4 3 2 6 6 C 1.29952 * 107.41456 * 0.36966 * 5 4 3 7 7 C 1.50703 * 125.30566 * 179.89323 * 6 5 4 8 8 C 1.50701 * 109.47064 * 269.69197 * 7 6 5 9 9 O 1.21280 * 119.99781 * 359.97438 * 8 7 6 10 10 N 1.34771 * 119.99622 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99622 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47212 * 179.97438 * 11 10 8 13 13 C 1.52992 * 109.47482 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.46906 * 55.00224 * 13 12 11 15 15 C 1.52998 * 109.47705 * 174.99884 * 13 12 11 16 16 N 1.46898 * 109.47092 * 295.00148 * 13 12 11 17 17 C 1.46905 * 110.99865 * 155.00007 * 16 13 12 18 18 C 1.50701 * 109.46951 * 179.97438 * 17 16 13 19 19 O 1.21294 * 120.00148 * 0.02562 * 18 17 16 20 20 N 1.34782 * 120.00062 * 179.97438 * 18 17 16 21 21 C 1.37095 * 119.99889 * 179.97438 * 20 18 17 22 22 H 1.07994 * 120.00089 * 0.02562 * 21 20 18 23 23 C 1.38955 * 119.99695 * 180.02562 * 21 20 18 24 24 N 1.31406 * 119.99698 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99938 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47194 * 90.00157 * 25 23 21 27 27 H 1.48501 * 109.46712 * 209.99984 * 25 23 21 28 28 H 1.48500 * 109.47307 * 329.99590 * 25 23 21 29 29 H 1.08993 * 109.47450 * 270.00637 * 1 2 3 30 30 H 1.09004 * 109.47144 * 30.00689 * 1 2 3 31 31 H 1.08999 * 109.46731 * 150.00168 * 1 2 3 32 32 H 1.09001 * 109.46980 * 149.69004 * 7 6 5 33 33 H 1.09002 * 109.47152 * 29.69104 * 7 6 5 34 34 H 0.96996 * 120.00772 * 359.97438 * 10 8 7 35 35 H 1.09002 * 109.47068 * 299.99729 * 11 10 8 36 36 H 1.09001 * 109.47372 * 59.99816 * 11 10 8 37 37 H 1.09002 * 109.47153 * 300.00008 * 12 11 10 38 38 H 1.08998 * 109.47533 * 59.99637 * 12 11 10 39 39 H 1.09001 * 109.46974 * 300.00556 * 15 13 12 40 40 H 1.09000 * 109.46929 * 59.99736 * 15 13 12 41 41 H 1.09000 * 109.47812 * 179.97438 * 15 13 12 42 42 H 1.00895 * 111.00265 * 278.94995 * 16 13 12 43 43 H 1.09003 * 109.46905 * 299.99465 * 17 16 13 44 44 H 1.08999 * 109.47700 * 60.00069 * 17 16 13 45 45 H 0.96999 * 119.99748 * 0.02562 * 20 18 17 46 46 H 0.97008 * 119.99966 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6082 0.6246 0.0006 5 7 3.5709 -0.7936 0.0062 6 6 2.3212 -1.1499 0.0006 7 6 1.8208 -2.5714 0.0013 8 6 1.6541 -3.0460 -1.4193 9 8 1.9154 -2.3028 -2.3414 10 7 1.2136 -4.2958 -1.6648 11 6 1.0510 -4.7569 -3.0459 12 6 0.5431 -6.2001 -3.0452 13 6 0.3727 -6.6815 -4.4873 14 1 1.3106 -6.5512 -5.0271 15 6 -0.0149 -8.1616 -4.4886 16 7 -0.6829 -5.8984 -5.1435 17 6 -0.4969 -5.8811 -6.6006 18 6 -1.5962 -5.0708 -7.2377 19 8 -2.4503 -4.5577 -6.5459 20 7 -1.6298 -4.9153 -8.5761 21 6 -2.6302 -4.1785 -9.1556 22 1 -3.3911 -3.7224 -8.5398 23 6 -2.6651 -4.0187 -10.5355 24 7 -3.6237 -3.3121 -11.0910 25 14 -1.3493 -4.8082 -11.6008 26 1 -1.7852 -6.1714 -11.9969 27 1 -1.1367 -3.9834 -12.8172 28 1 -0.0801 -4.8973 -10.8351 29 1 -0.3634 0.0001 1.0276 30 1 -0.3634 0.8900 -0.5140 31 1 -0.3633 -0.8900 -0.5138 32 1 0.8607 -2.6183 0.5152 33 1 2.5397 -3.2094 0.5155 34 1 1.0043 -4.8900 -0.9273 35 1 0.3322 -4.1187 -3.5598 36 1 2.0110 -4.7102 -3.5600 37 1 1.2622 -6.8381 -2.5314 38 1 -0.4168 -6.2473 -2.5310 39 1 0.7683 -8.7427 -4.0017 40 1 -0.9528 -8.2920 -3.9488 41 1 -0.1368 -8.5045 -5.5161 42 1 -1.5973 -6.2484 -4.8999 43 1 0.4686 -5.4345 -6.8383 44 1 -0.5295 -6.9012 -6.9833 45 1 -0.9466 -5.3252 -9.1292 46 1 -3.6483 -3.2008 -12.0544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317410717.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:44 Heat of formation + Delta-G solvation = -18.844944 kcal Electronic energy + Delta-G solvation = -28389.561142 eV Core-core repulsion = 24124.126929 eV Total energy + Delta-G solvation = -4265.434213 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.63782 -40.71943 -40.32543 -38.32965 -36.13186 -35.80373 -35.61685 -34.50334 -33.76537 -32.72496 -31.00348 -29.72927 -29.15366 -28.06398 -25.61935 -24.50486 -23.39887 -22.20552 -21.79988 -21.32369 -21.04638 -20.25806 -18.41939 -18.05101 -17.69004 -17.06406 -17.00021 -16.86049 -16.75582 -16.45376 -16.12856 -15.61957 -15.34217 -15.21212 -15.01482 -14.77984 -14.62734 -14.42733 -14.28060 -14.25228 -13.91769 -13.82762 -13.55127 -13.22044 -13.13094 -12.90171 -12.84449 -12.66235 -12.60897 -12.42742 -12.20640 -12.15799 -12.10576 -11.98409 -11.69135 -11.67989 -11.51227 -11.02707 -10.42573 -10.25149 -10.07862 -9.22455 -8.42054 -6.02573 -0.58195 0.85382 1.29255 1.34043 1.43213 1.46393 1.55009 1.96333 2.00421 2.22001 2.25659 2.75940 2.79816 3.14798 3.45882 3.47340 3.80759 3.90703 3.93430 4.13035 4.14235 4.19272 4.33430 4.38348 4.43672 4.50282 4.51627 4.60225 4.61124 4.61244 4.69497 4.81789 4.95264 5.07080 5.08501 5.25208 5.30040 5.37014 5.49827 5.52898 5.79713 5.92112 6.12357 6.48866 6.54814 6.59666 6.87941 7.25441 7.39871 7.96537 8.75663 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011154 B = 0.002127 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.810502 B =13159.600455 C =14732.092197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.095 3.905 3 N -0.311 5.311 4 O -0.019 6.019 5 N -0.292 5.292 6 C 0.105 3.895 7 C -0.072 4.072 8 C 0.511 3.489 9 O -0.592 6.592 10 N -0.704 5.704 11 C 0.126 3.874 12 C -0.103 4.103 13 C 0.082 3.918 14 H 0.083 0.917 15 C -0.177 4.177 16 N -0.680 5.680 17 C 0.063 3.937 18 C 0.448 3.552 19 O -0.613 6.613 20 N -0.594 5.594 21 C -0.328 4.328 22 H 0.055 0.945 23 C -0.016 4.016 24 N -0.935 5.935 25 Si 0.964 3.036 26 H -0.254 1.254 27 H -0.277 1.277 28 H -0.234 1.234 29 H 0.136 0.864 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.183 0.817 33 H 0.159 0.841 34 H 0.424 0.576 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.049 0.951 42 H 0.346 0.654 43 H 0.106 0.894 44 H 0.077 0.923 45 H 0.389 0.611 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.335 -11.576 26.172 31.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.088 4.088 3 N -0.060 5.060 4 O -0.152 6.152 5 N -0.038 5.038 6 C -0.080 4.080 7 C -0.112 4.112 8 C 0.296 3.704 9 O -0.472 6.472 10 N -0.357 5.357 11 C 0.002 3.998 12 C -0.141 4.141 13 C -0.028 4.028 14 H 0.101 0.899 15 C -0.235 4.235 16 N -0.313 5.313 17 C -0.070 4.070 18 C 0.236 3.764 19 O -0.497 6.497 20 N -0.235 5.235 21 C -0.457 4.457 22 H 0.074 0.926 23 C -0.215 4.215 24 N -0.576 5.576 25 Si 0.784 3.216 26 H -0.178 1.178 27 H -0.202 1.202 28 H -0.157 1.157 29 H 0.154 0.846 30 H 0.106 0.894 31 H 0.127 0.873 32 H 0.200 0.800 33 H 0.176 0.824 34 H 0.262 0.738 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.121 0.879 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.165 0.835 43 H 0.124 0.876 44 H 0.095 0.905 45 H 0.224 0.776 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.403 -9.169 25.914 30.582 hybrid contribution -0.554 -1.036 -1.397 1.825 sum 12.849 -10.204 24.517 29.501 Atomic orbital electron populations 1.20888 0.81032 1.06315 1.07074 1.25299 1.02095 0.88186 0.93180 1.79898 0.88783 1.21045 1.16248 1.93353 1.21600 1.14215 1.86063 1.79818 1.19233 0.91008 1.13739 1.24466 0.89247 0.99632 0.94611 1.20653 1.08626 0.86771 0.95191 1.20664 0.76575 0.82199 0.90916 1.90824 1.51957 1.56237 1.48196 1.45745 1.66381 1.13689 1.09872 1.21222 1.00017 0.96533 0.82024 1.21696 1.02847 0.93493 0.96086 1.21657 0.94746 0.91175 0.95205 0.89881 1.22438 1.02863 0.96051 1.02191 1.60213 1.07024 1.58284 1.05766 1.21629 0.96874 0.98784 0.89704 1.21073 0.88641 0.84824 0.81864 1.90536 1.43162 1.53261 1.62749 1.42069 1.26301 1.48381 1.06792 1.19005 1.05833 1.29114 0.91741 0.92644 1.26118 1.00219 0.97421 0.97724 1.69804 1.34588 1.40780 1.12380 0.85374 0.78831 0.79064 0.78316 1.17828 1.20176 1.15696 0.84622 0.89420 0.87334 0.80019 0.82363 0.73802 0.93303 0.93369 0.87930 0.90156 0.89879 0.92079 0.93139 0.83482 0.87647 0.90478 0.77565 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 10.05 71.24 0.72 -0.16 16 2 C 0.10 1.79 7.19 43.49 0.31 2.10 16 3 N -0.31 -8.18 12.98 -47.16 -0.61 -8.79 16 4 O -0.02 -0.58 13.71 70.18 0.96 0.39 16 5 N -0.29 -7.47 12.98 -47.15 -0.61 -8.08 16 6 C 0.10 1.90 5.68 43.49 0.25 2.15 16 7 C -0.07 -0.52 5.87 29.10 0.17 -0.35 16 8 C 0.51 8.56 7.82 87.66 0.69 9.25 16 9 O -0.59 -18.12 16.03 -3.03 -0.05 -18.17 16 10 N -0.70 -7.92 5.56 -463.06 -2.57 -10.49 16 11 C 0.13 2.25 5.56 86.38 0.48 2.73 16 12 C -0.10 -1.15 5.00 30.59 0.15 -0.99 16 13 C 0.08 1.28 2.59 44.91 0.12 1.40 16 14 H 0.08 1.27 7.80 -2.39 -0.02 1.26 16 15 C -0.18 -2.11 9.16 71.98 0.66 -1.45 16 16 N -0.68 -17.46 5.33 -495.58 -2.64 -20.10 16 17 C 0.06 1.82 5.97 85.56 0.51 2.33 16 18 C 0.45 20.02 7.82 87.66 0.69 20.71 16 19 O -0.61 -33.57 15.78 -3.07 -0.05 -33.62 16 20 N -0.59 -28.13 5.09 -306.98 -1.56 -29.69 16 21 C -0.33 -19.36 10.16 84.04 0.85 -18.50 16 22 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 23 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 24 N -0.93 -56.90 13.96 21.66 0.30 -56.60 16 25 Si 0.96 39.22 27.74 68.60 1.90 41.12 16 26 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 27 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 28 H -0.23 -8.09 6.52 99.48 0.65 -7.44 16 29 H 0.14 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.11 0.74 7.78 -2.39 -0.02 0.72 16 32 H 0.18 -0.58 7.77 -2.39 -0.02 -0.60 16 33 H 0.16 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.42 0.70 8.47 -92.71 -0.79 -0.08 16 35 H 0.05 1.33 7.75 -2.39 -0.02 1.31 16 36 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 41 H 0.05 0.70 7.45 -2.39 -0.02 0.68 16 42 H 0.35 9.48 8.17 -89.70 -0.73 8.75 16 43 H 0.11 2.74 8.06 -2.39 -0.02 2.72 16 44 H 0.08 1.79 7.44 -2.39 -0.02 1.78 16 45 H 0.39 15.29 5.76 -92.71 -0.53 14.76 16 46 H 0.28 15.51 8.31 -92.70 -0.77 14.74 16 Total: -1.00 -97.35 395.52 0.06 -97.29 By element: Atomic # 1 Polarization: 29.06 SS G_CDS: -1.07 Total: 27.99 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: 6.06 Total: 18.76 kcal Atomic # 7 Polarization: -126.06 SS G_CDS: -7.70 Total: -133.75 kcal Atomic # 8 Polarization: -52.27 SS G_CDS: 0.87 Total: -51.40 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 1.90 Total: 41.12 kcal Total: -97.35 0.06 -97.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317410717.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.442 kcal (2) G-P(sol) polarization free energy of solvation -97.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds