Wall clock time and date at job start Tue Mar 31 2020 22:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47010 * 2 1 4 4 C 1.38600 * 119.55329 * 125.02133 * 3 2 1 5 5 C 1.38586 * 119.35699 * 179.97438 * 4 3 2 6 6 C 1.38631 * 118.48391 * 359.72773 * 5 4 3 7 7 C 1.39270 * 119.05994 * 0.53370 * 6 5 4 8 8 C 1.48176 * 119.72082 * 179.72765 * 7 6 5 9 9 O 1.21507 * 119.99842 * 359.72934 * 8 7 6 10 10 N 1.34776 * 119.99700 * 179.72644 * 8 7 6 11 11 C 1.46503 * 119.99569 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46814 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.47321 * 294.99860 * 12 11 10 14 14 N 1.46499 * 109.47475 * 54.99622 * 12 11 10 15 15 C 1.36932 * 119.99995 * 204.99860 * 14 12 11 16 16 H 1.08001 * 120.00526 * 0.02562 * 15 14 12 17 17 C 1.38817 * 119.99659 * 180.02562 * 15 14 12 18 18 N 1.31618 * 120.00077 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99753 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47206 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47139 * 119.99879 * 19 17 15 22 22 H 1.48501 * 109.46770 * 239.99492 * 19 17 15 23 23 C 1.50702 * 109.47221 * 175.00227 * 12 11 10 24 24 C 1.38234 * 120.00272 * 99.99373 * 23 12 11 25 25 C 1.38230 * 119.99880 * 179.97438 * 24 23 12 26 26 C 1.38235 * 120.00326 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99464 * 280.02088 * 23 12 11 29 29 N 1.31498 * 119.54899 * 304.99956 * 3 2 1 30 30 H 1.08998 * 109.46934 * 60.00138 * 1 2 3 31 31 H 1.09000 * 109.47058 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47423 * 300.00004 * 1 2 3 33 33 H 1.08993 * 109.47250 * 239.99764 * 2 1 3 34 34 H 1.08998 * 109.46934 * 119.99861 * 2 1 3 35 35 H 1.08003 * 120.32260 * 359.95906 * 4 3 2 36 36 H 1.07995 * 120.75801 * 180.02562 * 5 4 3 37 37 H 1.07998 * 120.46956 * 180.28186 * 6 5 4 38 38 H 0.96999 * 120.00521 * 0.02562 * 10 8 7 39 39 H 1.08994 * 109.46994 * 60.00502 * 11 10 8 40 40 H 1.09000 * 109.46867 * 299.99782 * 11 10 8 41 41 H 0.97004 * 119.99571 * 25.00541 * 14 12 11 42 42 H 0.97008 * 119.99977 * 180.02562 * 18 17 15 43 43 H 1.08001 * 119.99769 * 0.02562 * 24 23 12 44 44 H 1.08000 * 120.00376 * 180.02562 * 25 24 23 45 45 H 1.08000 * 120.00616 * 179.72578 * 26 25 24 46 46 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.00481 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9125 1.8347 0.9874 5 6 3.3723 3.1421 0.9832 6 6 2.9356 3.9932 -0.0202 7 6 2.0463 3.5107 -0.9771 8 6 1.5654 4.4095 -2.0525 9 8 1.9432 5.5636 -2.0940 10 7 0.7090 3.9469 -2.9847 11 6 0.2340 4.8354 -4.0483 12 6 -0.7203 4.0681 -4.9656 13 1 -0.1744 3.2742 -5.4754 14 7 -1.8004 3.4830 -4.1672 15 6 -2.4634 2.3740 -4.6206 16 1 -2.1899 1.9303 -5.5665 17 6 -3.4872 1.8200 -3.8643 18 7 -3.8209 2.3611 -2.7118 19 14 -4.3913 0.3067 -4.4824 20 1 -3.8301 -0.1036 -5.7946 21 1 -4.2286 -0.8003 -3.5060 22 1 -5.8342 0.6213 -4.6380 23 6 -1.3038 5.0115 -5.9856 24 6 -0.7866 5.0501 -7.2670 25 6 -1.3223 5.9151 -8.2027 26 6 -2.3755 6.7412 -7.8574 27 6 -2.8934 6.7018 -6.5763 28 6 -2.3560 5.8387 -5.6397 29 7 1.6298 2.2509 -0.9371 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.2368 1.1451 1.7528 36 1 4.0589 3.4885 1.7414 37 1 3.2771 5.0172 -0.0568 38 1 0.4071 3.0257 -2.9514 39 1 1.0841 5.1956 -4.6274 40 1 -0.2902 5.6829 -3.6065 41 1 -2.0459 3.8814 -3.3175 42 1 -4.5361 1.9737 -2.1831 43 1 0.0354 4.4039 -7.5372 44 1 -0.9185 5.9451 -9.2040 45 1 -2.7911 7.4202 -8.5871 46 1 -3.7160 7.3474 -6.3063 47 1 -2.7601 5.8085 -4.6386 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317721733.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:54 Heat of formation + Delta-G solvation = 29.415723 kcal Electronic energy + Delta-G solvation = -28781.861887 eV Core-core repulsion = 24929.369677 eV Total energy + Delta-G solvation = -3852.492210 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.59585 -39.14061 -38.54462 -35.89252 -34.16123 -33.65193 -32.58905 -31.80900 -30.39276 -29.94049 -29.52920 -27.59765 -24.95465 -24.31481 -23.47852 -22.63361 -21.90814 -21.33270 -20.30923 -19.92032 -17.92638 -17.24432 -16.55066 -16.29610 -15.99585 -15.39311 -15.30527 -14.86551 -14.76506 -14.53517 -14.18059 -14.11614 -13.78805 -13.62200 -13.31492 -13.14945 -12.90270 -12.79174 -12.73699 -12.36378 -12.21758 -11.99546 -11.85946 -11.35175 -11.10789 -10.97235 -10.94388 -10.80452 -10.70930 -10.43973 -10.08586 -10.06673 -9.96491 -9.76665 -9.38486 -9.05051 -9.03748 -8.61629 -8.38757 -8.16952 -7.08796 -5.82146 -3.13171 0.68697 1.18081 1.88142 1.94706 2.92295 3.39212 3.42547 3.47280 3.48283 3.93368 4.11625 4.32790 4.53964 4.54838 4.82905 4.90873 5.01976 5.26649 5.27615 5.35676 5.39126 5.43231 5.44079 5.45874 5.50739 5.58731 5.62603 5.78710 5.79764 5.89603 5.93645 6.01567 6.05980 6.06511 6.11816 6.20847 6.28963 6.43653 6.50863 6.52510 6.64150 6.65469 6.81275 6.95449 7.04124 7.30900 7.54861 7.68062 7.71958 8.03881 8.33216 8.51540 9.46689 9.96442 10.33198 11.39150 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008825 B = 0.003976 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3172.191719 B = 7040.823773 C = 9615.223308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.071 4.071 3 C 0.132 3.868 4 C -0.155 4.155 5 C -0.082 4.082 6 C -0.124 4.124 7 C 0.091 3.909 8 C 0.566 3.434 9 O -0.548 6.548 10 N -0.689 5.689 11 C 0.118 3.882 12 C 0.198 3.802 13 H 0.066 0.934 14 N -0.712 5.712 15 C -0.241 4.241 16 H 0.071 0.929 17 C -0.004 4.004 18 N -0.926 5.926 19 Si 0.903 3.097 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.293 1.293 23 C -0.080 4.080 24 C -0.120 4.120 25 C -0.130 4.130 26 C -0.135 4.135 27 C -0.128 4.128 28 C -0.083 4.083 29 N -0.445 5.445 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.146 0.854 38 H 0.422 0.578 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.387 0.613 42 H 0.255 0.745 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.698 1.003 3.249 13.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 C -0.008 4.008 4 C -0.175 4.175 5 C -0.108 4.108 6 C -0.144 4.144 7 C -0.047 4.047 8 C 0.350 3.650 9 O -0.426 6.426 10 N -0.340 5.340 11 C -0.006 4.006 12 C 0.087 3.913 13 H 0.084 0.916 14 N -0.353 5.353 15 C -0.372 4.372 16 H 0.089 0.911 17 C -0.201 4.201 18 N -0.573 5.573 19 Si 0.734 3.266 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.220 1.220 23 C -0.084 4.084 24 C -0.139 4.139 25 C -0.148 4.148 26 C -0.153 4.153 27 C -0.146 4.146 28 C -0.101 4.101 29 N -0.157 5.157 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.155 0.845 36 H 0.157 0.843 37 H 0.164 0.836 38 H 0.261 0.739 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.222 0.778 42 H 0.065 0.935 43 H 0.132 0.868 44 H 0.130 0.870 45 H 0.129 0.871 46 H 0.131 0.869 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 12.278 1.371 2.468 12.598 hybrid contribution -0.427 -0.808 0.598 1.092 sum 11.850 0.563 3.065 12.253 Atomic orbital electron populations 1.21701 0.93172 1.01985 1.03627 1.20514 0.97730 0.89769 1.02877 1.21370 0.92943 0.96321 0.90169 1.22183 0.98525 0.96931 0.99861 1.21564 0.98363 0.93259 0.97591 1.22086 0.96676 1.01700 0.93985 1.21214 0.96238 0.91151 0.96138 1.17865 0.79509 0.86271 0.81359 1.90745 1.59014 1.17509 1.75363 1.45845 1.44475 1.16920 1.26776 1.21664 0.97303 0.93036 0.88621 1.19473 0.89384 0.92347 0.90118 0.91626 1.42439 1.38188 1.32319 1.22351 1.19206 1.11985 1.02846 1.03121 0.91101 1.24692 0.99192 0.99344 0.96845 1.69671 1.32470 1.41956 1.13242 0.86185 0.79640 0.82879 0.77867 1.20573 1.21841 1.21968 1.20978 0.96149 0.95923 0.95354 1.21010 1.00212 0.99213 0.93466 1.20977 0.97549 0.97419 0.98880 1.20976 0.97748 1.00080 0.96478 1.21105 1.00005 0.99664 0.93811 1.21011 0.95220 0.94043 0.99871 1.67407 1.21962 1.02568 1.23770 0.90344 0.92405 0.93061 0.89858 0.90610 0.84538 0.84295 0.83625 0.73928 0.91297 0.91360 0.77836 0.93538 0.86751 0.87020 0.87119 0.86880 0.85897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.77 37.16 0.36 -1.61 16 2 C -0.07 -0.79 6.33 -27.88 -0.18 -0.96 16 3 C 0.13 1.71 6.18 -82.60 -0.51 1.20 16 4 C -0.15 -1.59 9.72 -39.32 -0.38 -1.98 16 5 C -0.08 -0.84 10.17 -39.31 -0.40 -1.23 16 6 C -0.12 -1.61 9.63 -39.05 -0.38 -1.99 16 7 C 0.09 1.45 6.75 -83.01 -0.56 0.89 16 8 C 0.57 10.13 7.81 -12.18 -0.10 10.03 16 9 O -0.55 -10.75 16.32 5.36 0.09 -10.66 16 10 N -0.69 -12.30 5.38 -61.15 -0.33 -12.63 16 11 C 0.12 2.07 5.21 -4.04 -0.02 2.05 16 12 C 0.20 3.73 2.64 -69.08 -0.18 3.54 16 13 H 0.07 1.23 7.94 -51.93 -0.41 0.82 16 14 N -0.71 -16.28 3.80 -54.55 -0.21 -16.49 16 15 C -0.24 -6.22 9.92 -15.06 -0.15 -6.37 16 16 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 17 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 18 N -0.93 -26.46 13.06 55.49 0.72 -25.73 16 19 Si 0.90 21.73 29.55 -169.99 -5.02 16.70 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 C -0.08 -1.46 4.92 -104.62 -0.51 -1.98 16 24 C -0.12 -1.95 9.67 -39.59 -0.38 -2.33 16 25 C -0.13 -1.93 10.05 -39.59 -0.40 -2.33 16 26 C -0.13 -2.01 10.05 -39.58 -0.40 -2.40 16 27 C -0.13 -2.09 10.05 -39.58 -0.40 -2.49 16 28 C -0.08 -1.54 9.32 -39.58 -0.37 -1.91 16 29 N -0.45 -7.00 9.05 -6.06 -0.05 -7.05 16 30 H 0.08 1.32 7.94 -51.93 -0.41 0.90 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.62 7.87 -51.93 -0.41 0.21 16 35 H 0.14 0.97 7.95 -52.48 -0.42 0.55 16 36 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.15 1.78 7.64 -52.49 -0.40 1.38 16 38 H 0.42 7.95 7.47 -40.82 -0.30 7.64 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.39 9.62 7.80 -40.82 -0.32 9.30 16 42 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 43 H 0.11 1.63 8.04 -52.49 -0.42 1.21 16 44 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 45 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 46 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 47 H 0.12 2.45 7.72 -52.49 -0.41 2.04 16 LS Contribution 401.62 15.07 6.05 6.05 Total: -1.00 -30.46 401.62 -10.65 -41.11 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: -6.85 Total: 18.79 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -5.05 Total: -10.08 kcal Atomic # 7 Polarization: -62.04 SS G_CDS: 0.13 Total: -61.91 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.46 -10.65 -41.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317721733.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.525 kcal (2) G-P(sol) polarization free energy of solvation -30.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds