Wall clock time and date at job start Tue Mar 31 2020 22:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47010 * 2 1 4 4 C 1.38600 * 119.55329 * 125.02133 * 3 2 1 5 5 C 1.38586 * 119.35699 * 179.97438 * 4 3 2 6 6 C 1.38631 * 118.48391 * 359.72773 * 5 4 3 7 7 C 1.39270 * 119.05994 * 0.53370 * 6 5 4 8 8 C 1.48176 * 119.72082 * 179.72765 * 7 6 5 9 9 O 1.21507 * 119.99842 * 359.72934 * 8 7 6 10 10 N 1.34776 * 119.99700 * 179.72644 * 8 7 6 11 11 C 1.46503 * 119.99569 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46814 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.47321 * 294.99860 * 12 11 10 14 14 N 1.46499 * 109.47475 * 54.99622 * 12 11 10 15 15 C 1.36932 * 119.99995 * 204.99860 * 14 12 11 16 16 H 1.08001 * 120.00526 * 0.02562 * 15 14 12 17 17 C 1.38817 * 119.99659 * 180.02562 * 15 14 12 18 18 N 1.31618 * 120.00077 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99753 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47206 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47139 * 119.99879 * 19 17 15 22 22 H 1.48501 * 109.46770 * 239.99492 * 19 17 15 23 23 C 1.50702 * 109.47221 * 175.00227 * 12 11 10 24 24 C 1.38234 * 120.00272 * 99.99373 * 23 12 11 25 25 C 1.38230 * 119.99880 * 179.97438 * 24 23 12 26 26 C 1.38235 * 120.00326 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99464 * 280.02088 * 23 12 11 29 29 N 1.31498 * 119.54899 * 304.99956 * 3 2 1 30 30 H 1.08998 * 109.46934 * 60.00138 * 1 2 3 31 31 H 1.09000 * 109.47058 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47423 * 300.00004 * 1 2 3 33 33 H 1.08993 * 109.47250 * 239.99764 * 2 1 3 34 34 H 1.08998 * 109.46934 * 119.99861 * 2 1 3 35 35 H 1.08003 * 120.32260 * 359.95906 * 4 3 2 36 36 H 1.07995 * 120.75801 * 180.02562 * 5 4 3 37 37 H 1.07998 * 120.46956 * 180.28186 * 6 5 4 38 38 H 0.96999 * 120.00521 * 0.02562 * 10 8 7 39 39 H 1.08994 * 109.46994 * 60.00502 * 11 10 8 40 40 H 1.09000 * 109.46867 * 299.99782 * 11 10 8 41 41 H 0.97004 * 119.99571 * 25.00541 * 14 12 11 42 42 H 0.97008 * 119.99977 * 180.02562 * 18 17 15 43 43 H 1.08001 * 119.99769 * 0.02562 * 24 23 12 44 44 H 1.08000 * 120.00376 * 180.02562 * 25 24 23 45 45 H 1.08000 * 120.00616 * 179.72578 * 26 25 24 46 46 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.00481 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9125 1.8347 0.9874 5 6 3.3723 3.1421 0.9832 6 6 2.9356 3.9932 -0.0202 7 6 2.0463 3.5107 -0.9771 8 6 1.5654 4.4095 -2.0525 9 8 1.9432 5.5636 -2.0940 10 7 0.7090 3.9469 -2.9847 11 6 0.2340 4.8354 -4.0483 12 6 -0.7203 4.0681 -4.9656 13 1 -0.1744 3.2742 -5.4754 14 7 -1.8004 3.4830 -4.1672 15 6 -2.4634 2.3740 -4.6206 16 1 -2.1899 1.9303 -5.5665 17 6 -3.4872 1.8200 -3.8643 18 7 -3.8209 2.3611 -2.7118 19 14 -4.3913 0.3067 -4.4824 20 1 -3.8301 -0.1036 -5.7946 21 1 -4.2286 -0.8003 -3.5060 22 1 -5.8342 0.6213 -4.6380 23 6 -1.3038 5.0115 -5.9856 24 6 -0.7866 5.0501 -7.2670 25 6 -1.3223 5.9151 -8.2027 26 6 -2.3755 6.7412 -7.8574 27 6 -2.8934 6.7018 -6.5763 28 6 -2.3560 5.8387 -5.6397 29 7 1.6298 2.2509 -0.9371 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.2368 1.1451 1.7528 36 1 4.0589 3.4885 1.7414 37 1 3.2771 5.0172 -0.0568 38 1 0.4071 3.0257 -2.9514 39 1 1.0841 5.1956 -4.6274 40 1 -0.2902 5.6829 -3.6065 41 1 -2.0459 3.8814 -3.3175 42 1 -4.5361 1.9737 -2.1831 43 1 0.0354 4.4039 -7.5372 44 1 -0.9185 5.9451 -9.2040 45 1 -2.7911 7.4202 -8.5871 46 1 -3.7160 7.3474 -6.3063 47 1 -2.7601 5.8085 -4.6386 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317721733.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:53 Heat of formation + Delta-G solvation = 11.722916 kcal Electronic energy + Delta-G solvation = -28782.629105 eV Core-core repulsion = 24929.369677 eV Total energy + Delta-G solvation = -3853.259428 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.69368 -40.47232 -39.85858 -37.43696 -35.31059 -35.12136 -33.91559 -33.20401 -31.70588 -31.18791 -30.97795 -29.07521 -26.25807 -25.54869 -25.05819 -23.96020 -23.21272 -22.28828 -21.66003 -21.32672 -19.44159 -18.92476 -17.79428 -17.47935 -17.04415 -16.87034 -16.57464 -16.37700 -16.00521 -15.79553 -15.72858 -15.34759 -15.19669 -14.88434 -14.58373 -14.53440 -14.18108 -14.06110 -14.04004 -13.79657 -13.41775 -13.21817 -12.92980 -12.88094 -12.81194 -12.45178 -12.38695 -12.16072 -12.00263 -11.97485 -11.83941 -11.64301 -11.40409 -11.00116 -10.89930 -10.43104 -10.21351 -9.91543 -9.68067 -9.53250 -9.02926 -7.90951 -5.20542 -0.34406 0.26688 0.58196 0.64571 1.46555 1.48053 1.56595 1.68516 2.11424 2.56146 2.84631 3.00754 3.06665 3.43149 3.64517 3.76701 3.85662 4.01553 4.04081 4.11080 4.15593 4.20999 4.32574 4.34581 4.36861 4.40733 4.43642 4.48289 4.57014 4.66333 4.78132 4.81762 4.87671 5.00381 5.03427 5.06186 5.13311 5.20646 5.23410 5.30192 5.38266 5.46732 5.54537 5.67042 5.69058 5.73111 5.94003 6.25183 6.28528 6.41817 6.85678 7.11380 7.36034 8.02900 8.30057 9.31258 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008825 B = 0.003976 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3172.191719 B = 7040.823773 C = 9615.223308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.065 4.065 3 C 0.110 3.890 4 C -0.135 4.135 5 C -0.072 4.072 6 C -0.126 4.126 7 C 0.056 3.944 8 C 0.562 3.438 9 O -0.574 6.574 10 N -0.692 5.692 11 C 0.129 3.871 12 C 0.204 3.796 13 H 0.067 0.933 14 N -0.717 5.717 15 C -0.229 4.229 16 H 0.073 0.927 17 C -0.062 4.062 18 N -0.961 5.961 19 Si 0.961 3.039 20 H -0.269 1.269 21 H -0.293 1.293 22 H -0.300 1.300 23 C -0.099 4.099 24 C -0.127 4.127 25 C -0.125 4.125 26 C -0.130 4.130 27 C -0.136 4.136 28 C -0.110 4.110 29 N -0.478 5.478 30 H 0.032 0.968 31 H 0.070 0.930 32 H 0.046 0.954 33 H 0.083 0.917 34 H 0.117 0.883 35 H 0.182 0.818 36 H 0.183 0.817 37 H 0.148 0.852 38 H 0.416 0.584 39 H 0.083 0.917 40 H 0.053 0.947 41 H 0.373 0.627 42 H 0.248 0.752 43 H 0.133 0.867 44 H 0.148 0.852 45 H 0.145 0.855 46 H 0.128 0.872 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.687 0.279 2.890 14.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.103 4.103 3 C -0.030 4.030 4 C -0.155 4.155 5 C -0.097 4.097 6 C -0.147 4.147 7 C -0.082 4.082 8 C 0.348 3.652 9 O -0.454 6.454 10 N -0.342 5.342 11 C 0.004 3.996 12 C 0.095 3.905 13 H 0.085 0.915 14 N -0.356 5.356 15 C -0.361 4.361 16 H 0.091 0.909 17 C -0.254 4.254 18 N -0.611 5.611 19 Si 0.791 3.209 20 H -0.193 1.193 21 H -0.220 1.220 22 H -0.228 1.228 23 C -0.103 4.103 24 C -0.145 4.145 25 C -0.143 4.143 26 C -0.148 4.148 27 C -0.154 4.154 28 C -0.128 4.128 29 N -0.191 5.191 30 H 0.051 0.949 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.135 0.865 35 H 0.199 0.801 36 H 0.200 0.800 37 H 0.166 0.834 38 H 0.254 0.746 39 H 0.101 0.899 40 H 0.071 0.929 41 H 0.206 0.794 42 H 0.057 0.943 43 H 0.151 0.849 44 H 0.166 0.834 45 H 0.163 0.837 46 H 0.146 0.854 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 14.302 0.661 2.058 14.465 hybrid contribution -0.966 -0.535 0.692 1.304 sum 13.336 0.126 2.750 13.617 Atomic orbital electron populations 1.21630 0.95470 1.01974 1.01105 1.20576 0.95523 0.89293 1.04877 1.21858 0.93915 0.96696 0.90567 1.22663 0.96120 0.97571 0.99098 1.22052 0.97949 0.92663 0.97054 1.22268 0.95955 1.02408 0.94106 1.20984 0.98715 0.91468 0.97007 1.18337 0.78864 0.86430 0.81603 1.90702 1.59994 1.18585 1.76148 1.45871 1.44678 1.16509 1.27153 1.21544 0.97240 0.92341 0.88440 1.19522 0.88310 0.92603 0.90100 0.91464 1.42449 1.38933 1.31944 1.22312 1.19463 1.11181 1.02917 1.02511 0.90943 1.25347 1.00639 1.02135 0.97328 1.69820 1.33241 1.43492 1.14572 0.85259 0.77953 0.79976 0.77686 1.19340 1.22035 1.22757 1.20812 0.96853 0.96512 0.96107 1.21269 1.00719 0.99874 0.92656 1.21409 0.96840 0.96003 1.00035 1.21395 0.97185 1.00011 0.96167 1.21343 1.00455 0.99313 0.94284 1.20940 0.96452 0.95997 0.99434 1.67292 1.23135 1.02954 1.25677 0.94909 0.91114 0.93484 0.89821 0.86509 0.80101 0.79953 0.83430 0.74623 0.89900 0.92911 0.79408 0.94309 0.84905 0.83450 0.83681 0.85381 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 9.77 71.98 0.70 -3.22 16 2 C -0.07 -1.34 6.33 29.85 0.19 -1.15 16 3 C 0.11 2.72 6.18 42.69 0.26 2.99 16 4 C -0.13 -2.29 9.72 22.44 0.22 -2.07 16 5 C -0.07 -1.23 10.17 22.45 0.23 -1.00 16 6 C -0.13 -3.22 9.63 22.61 0.22 -3.00 16 7 C 0.06 1.83 6.75 41.90 0.28 2.11 16 8 C 0.56 21.39 7.81 86.88 0.68 22.07 16 9 O -0.57 -23.71 16.32 -3.74 -0.06 -23.77 16 10 N -0.69 -26.58 5.38 -465.66 -2.50 -29.08 16 11 C 0.13 4.79 5.21 86.38 0.45 5.24 16 12 C 0.20 8.04 2.64 44.25 0.12 8.16 16 13 H 0.07 2.61 7.94 -2.39 -0.02 2.59 16 14 N -0.72 -34.67 3.80 -326.50 -1.24 -35.92 16 15 C -0.23 -12.24 9.92 84.04 0.83 -11.41 16 16 H 0.07 3.80 7.83 -2.91 -0.02 3.77 16 17 C -0.06 -3.45 5.50 84.86 0.47 -2.98 16 18 N -0.96 -57.60 13.06 21.65 0.28 -57.32 16 19 Si 0.96 45.83 29.55 68.60 2.03 47.86 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 22 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 23 C -0.10 -3.69 4.92 -19.87 -0.10 -3.79 16 24 C -0.13 -3.93 9.67 22.27 0.22 -3.71 16 25 C -0.13 -3.34 10.05 22.27 0.22 -3.11 16 26 C -0.13 -3.52 10.05 22.27 0.22 -3.29 16 27 C -0.14 -4.38 10.05 22.27 0.22 -4.16 16 28 C -0.11 -4.23 9.32 22.27 0.21 -4.03 16 29 N -0.48 -15.55 9.05 -173.08 -1.57 -17.11 16 30 H 0.03 1.17 7.94 -2.39 -0.02 1.15 16 31 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.12 1.45 7.87 -2.39 -0.02 1.43 16 35 H 0.18 1.46 7.95 -2.91 -0.02 1.44 16 36 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 37 H 0.15 3.59 7.64 -2.91 -0.02 3.57 16 38 H 0.42 17.00 7.47 -92.71 -0.69 16.31 16 39 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 40 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.37 20.00 7.80 -92.71 -0.72 19.28 16 42 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 43 H 0.13 3.55 8.04 -2.91 -0.02 3.52 16 44 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 45 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 46 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 47 H 0.09 4.09 7.72 -2.91 -0.02 4.07 16 Total: -1.00 -71.06 401.62 2.16 -68.90 By element: Atomic # 1 Polarization: 53.24 SS G_CDS: -0.43 Total: 52.81 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: 5.65 Total: -6.37 kcal Atomic # 7 Polarization: -134.40 SS G_CDS: -5.03 Total: -139.43 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.06 Total: -23.77 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -71.06 2.16 -68.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317721733.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.627 kcal (2) G-P(sol) polarization free energy of solvation -71.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds