Wall clock time and date at job start Tue Mar 31 2020 22:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47241 * 2 1 4 4 H 1.08994 * 109.46886 * 54.60613 * 3 2 1 5 5 C 1.52995 * 109.47130 * 174.60903 * 3 2 1 6 6 N 1.46506 * 109.46834 * 174.99845 * 5 3 2 7 7 C 1.34775 * 119.99821 * 179.97438 * 6 5 3 8 8 O 1.21279 * 120.00210 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99954 * 179.97438 * 7 6 5 10 10 C 1.50697 * 109.47026 * 180.02562 * 9 7 6 11 11 N 1.29949 * 125.30407 * 269.69490 * 10 9 7 12 12 O 1.41883 * 107.41304 * 179.89486 * 11 10 9 13 13 N 1.41877 * 106.38849 * 0.36686 * 12 11 10 14 14 C 1.29957 * 107.40872 * 359.78416 * 13 12 11 15 15 C 1.50704 * 125.29837 * 180.02562 * 14 13 12 16 16 N 1.46901 * 109.46853 * 294.61081 * 3 2 1 17 17 C 1.46906 * 110.99674 * 300.92051 * 16 3 2 18 18 C 1.50702 * 109.46969 * 185.68018 * 17 16 3 19 19 O 1.21289 * 119.99926 * 359.97438 * 18 17 16 20 20 N 1.34771 * 119.99669 * 180.02562 * 18 17 16 21 21 C 1.37103 * 119.99875 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99503 * 359.97438 * 21 20 18 23 23 C 1.38944 * 120.00219 * 179.97438 * 21 20 18 24 24 N 1.31412 * 120.00159 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 120.00195 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46934 * 0.02562 * 25 23 21 27 27 H 1.48494 * 109.46871 * 119.99872 * 25 23 21 28 28 H 1.48495 * 109.46930 * 240.00182 * 25 23 21 29 29 H 1.09001 * 109.47230 * 298.86251 * 1 2 3 30 30 H 1.08997 * 109.47227 * 58.86001 * 1 2 3 31 31 H 1.09001 * 109.47071 * 178.86795 * 1 2 3 32 32 H 1.08999 * 109.47468 * 239.99684 * 2 1 3 33 33 H 1.09002 * 109.47248 * 119.99843 * 2 1 3 34 34 H 1.09005 * 109.47214 * 294.99805 * 5 3 2 35 35 H 1.08996 * 109.47677 * 55.00055 * 5 3 2 36 36 H 0.96995 * 119.99880 * 359.97438 * 6 5 3 37 37 H 1.08992 * 109.47000 * 300.00406 * 9 7 6 38 38 H 1.09004 * 109.46825 * 60.00248 * 9 7 6 39 39 H 1.09003 * 109.46624 * 269.99470 * 15 14 13 40 40 H 1.08998 * 109.46787 * 29.99540 * 15 14 13 41 41 H 1.09000 * 109.47004 * 149.99645 * 15 14 13 42 42 H 1.00896 * 111.00131 * 64.86814 * 16 3 2 43 43 H 1.09002 * 109.47048 * 65.68091 * 17 16 3 44 44 H 1.09004 * 109.47096 * 305.67600 * 17 16 3 45 45 H 0.97000 * 120.00767 * 359.97438 * 20 18 17 46 46 H 0.96999 * 120.00152 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6000 1.9835 0.8377 5 6 3.5639 1.4446 0.1355 6 7 4.0629 2.8169 0.0158 7 6 5.3850 3.0634 0.1046 8 8 6.1616 2.1491 0.2832 9 6 5.8983 4.4749 -0.0191 10 6 7.3994 4.4770 0.1145 11 7 8.0539 4.6096 1.2292 12 8 9.4372 4.5549 0.9184 13 7 9.5253 4.3861 -0.4875 14 6 8.3118 4.3416 -0.9505 15 6 7.9387 4.1711 -2.4007 16 7 1.6594 2.0964 -1.2592 17 6 2.2178 1.3803 -2.4140 18 6 1.9258 2.1538 -3.6739 19 8 1.3124 3.1985 -3.6157 20 7 2.3453 1.6841 -4.8654 21 6 2.0792 2.3875 -6.0118 22 1 1.5330 3.3178 -5.9599 23 6 2.5121 1.9036 -7.2401 24 7 3.1772 0.7719 -7.3032 25 14 2.1489 2.8617 -8.8022 26 1 1.3923 4.0935 -8.4626 27 1 3.4257 3.2322 -9.4637 28 1 1.3406 2.0213 -9.7216 29 1 -0.3634 0.4961 0.9000 30 1 -0.3633 0.5314 -0.8796 31 1 -0.3633 -1.0275 -0.0203 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8428 1.0402 1.1086 35 1 3.9997 0.8297 -0.6519 36 1 3.4418 3.5480 -0.1274 37 1 5.6199 4.8786 -0.9925 38 1 5.4623 5.0903 0.7678 39 1 7.8580 5.1504 -2.8726 40 1 8.7065 3.5860 -2.9069 41 1 6.9820 3.6538 -2.4713 42 1 0.6567 2.1787 -1.3352 43 1 1.7650 0.3911 -2.4817 44 1 3.2962 1.2787 -2.2917 45 1 2.8356 0.8484 -4.9121 46 1 3.4791 0.4339 -8.1608 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318589856.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:43 Heat of formation + Delta-G solvation = -15.408302 kcal Electronic energy + Delta-G solvation = -29588.185131 eV Core-core repulsion = 25322.899942 eV Total energy + Delta-G solvation = -4265.285189 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.64581 -40.87887 -40.12359 -38.61937 -35.89712 -35.66728 -35.14712 -34.49508 -33.24383 -32.73293 -31.13458 -29.73853 -29.24401 -27.93490 -26.00384 -24.54667 -23.47182 -22.10858 -21.72253 -21.15794 -20.47525 -19.79990 -18.32517 -18.25408 -18.05016 -17.09124 -17.01667 -16.89059 -16.45969 -16.37348 -15.82787 -15.80451 -15.35000 -15.22391 -15.18169 -14.77463 -14.69834 -14.43148 -14.28838 -14.00120 -13.87915 -13.56238 -13.48185 -13.22236 -13.09567 -12.91035 -12.87083 -12.71547 -12.61250 -12.33816 -12.26560 -12.12707 -12.08138 -11.79332 -11.69211 -11.64430 -11.44523 -11.02562 -10.26799 -10.03563 -9.94519 -9.29493 -8.41154 -5.89078 -0.59608 0.84019 1.40249 1.46407 1.46975 1.54767 1.59294 1.99234 2.13282 2.25479 2.33358 2.79430 2.99795 3.27040 3.46589 3.58668 3.75945 3.84961 3.88296 4.06829 4.14019 4.20553 4.33804 4.35315 4.41168 4.48748 4.52879 4.57118 4.59502 4.60890 4.67086 4.81814 4.83257 4.96657 5.05122 5.14816 5.28659 5.40734 5.44977 5.47205 5.79178 5.93187 6.14149 6.44170 6.56077 6.66052 7.19498 7.21088 7.64255 8.18726 8.76273 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007797 B = 0.003375 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3590.314322 B = 8294.692859 C =11209.477100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.158 4.158 3 C 0.084 3.916 4 H 0.114 0.886 5 C 0.125 3.875 6 N -0.696 5.696 7 C 0.517 3.483 8 O -0.587 6.587 9 C -0.079 4.079 10 C 0.108 3.892 11 N -0.288 5.288 12 O -0.013 6.013 13 N -0.305 5.305 14 C 0.097 3.903 15 C -0.097 4.097 16 N -0.660 5.660 17 C 0.061 3.939 18 C 0.444 3.556 19 O -0.615 6.615 20 N -0.577 5.577 21 C -0.326 4.326 22 H 0.082 0.918 23 C -0.013 4.013 24 N -0.922 5.922 25 Si 0.988 3.012 26 H -0.270 1.270 27 H -0.273 1.273 28 H -0.276 1.276 29 H 0.069 0.931 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.054 0.946 36 H 0.422 0.578 37 H 0.166 0.834 38 H 0.156 0.844 39 H 0.128 0.872 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.352 0.648 43 H 0.062 0.938 44 H 0.096 0.904 45 H 0.393 0.607 46 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.216 2.697 14.099 14.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.198 4.198 3 C -0.026 4.026 4 H 0.132 0.868 5 C 0.001 3.999 6 N -0.348 5.348 7 C 0.302 3.698 8 O -0.468 6.468 9 C -0.119 4.119 10 C -0.076 4.076 11 N -0.033 5.033 12 O -0.147 6.147 13 N -0.054 5.054 14 C -0.086 4.086 15 C -0.154 4.154 16 N -0.293 5.293 17 C -0.072 4.072 18 C 0.232 3.768 19 O -0.501 6.501 20 N -0.214 5.214 21 C -0.456 4.456 22 H 0.100 0.900 23 C -0.212 4.212 24 N -0.564 5.564 25 Si 0.812 3.188 26 H -0.195 1.195 27 H -0.199 1.199 28 H -0.202 1.202 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.260 0.740 37 H 0.183 0.817 38 H 0.173 0.827 39 H 0.146 0.854 40 H 0.112 0.888 41 H 0.120 0.880 42 H 0.172 0.828 43 H 0.080 0.920 44 H 0.114 0.886 45 H 0.227 0.773 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.620 3.233 15.108 15.535 hybrid contribution -0.942 -0.918 -1.448 1.956 sum 0.678 2.315 13.661 13.872 Atomic orbital electron populations 1.21743 0.94891 1.02224 1.02015 1.22182 0.96992 0.97272 1.03321 1.21948 0.93454 0.94281 0.92915 0.86828 1.21467 0.93482 0.83199 1.01759 1.45674 1.06553 1.10912 1.71667 1.20399 0.82805 0.90396 0.76168 1.90762 1.57083 1.47745 1.51166 1.20588 0.84287 0.96248 1.10813 1.24296 0.99806 0.94684 0.88838 1.79825 0.88907 1.14061 1.20502 1.93342 1.19121 1.84847 1.17433 1.79900 1.20046 1.15772 0.89671 1.25141 0.88593 0.93485 1.01334 1.20836 1.04480 1.06387 0.83732 1.60200 1.18030 1.51377 0.99703 1.21545 1.01670 0.95171 0.88771 1.20793 0.83275 0.87444 0.85322 1.90495 1.45910 1.26473 1.87211 1.41968 1.50754 1.23235 1.05473 1.19677 1.34776 1.06071 0.85041 0.90028 1.25958 0.96275 0.97202 1.01769 1.69681 1.38346 1.20754 1.27602 0.84939 0.78168 0.78153 0.77542 1.19479 1.19867 1.20187 0.91181 0.93833 0.92209 0.92216 0.89756 0.90507 0.92736 0.73965 0.81656 0.82678 0.85433 0.88818 0.88025 0.82777 0.92048 0.88648 0.77349 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.71 71.98 0.70 -1.49 16 2 C -0.16 -2.33 5.17 30.60 0.16 -2.17 16 3 C 0.08 1.30 2.70 44.92 0.12 1.43 16 4 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 5 C 0.13 2.26 4.70 86.38 0.41 2.67 16 6 N -0.70 -12.13 5.39 -463.05 -2.50 -14.62 16 7 C 0.52 10.84 7.82 87.66 0.69 11.53 16 8 O -0.59 -17.91 16.03 -3.03 -0.05 -17.96 16 9 C -0.08 -1.14 5.87 29.10 0.17 -0.97 16 10 C 0.11 2.42 5.68 43.49 0.25 2.67 16 11 N -0.29 -8.04 12.98 -47.16 -0.61 -8.66 16 12 O -0.01 -0.41 13.71 70.15 0.96 0.55 16 13 N -0.31 -8.72 12.98 -47.15 -0.61 -9.33 16 14 C 0.10 2.22 7.19 43.49 0.31 2.54 16 15 C -0.10 -1.53 10.05 71.24 0.72 -0.81 16 16 N -0.66 -14.79 5.36 -495.55 -2.65 -17.44 16 17 C 0.06 1.73 5.34 85.56 0.46 2.19 16 18 C 0.44 18.55 7.83 87.66 0.69 19.24 16 19 O -0.62 -29.82 15.90 -3.06 -0.05 -29.87 16 20 N -0.58 -27.19 5.29 -306.99 -1.62 -28.81 16 21 C -0.33 -17.26 9.68 84.04 0.81 -16.45 16 22 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 23 C -0.01 -0.64 5.50 84.92 0.47 -0.17 16 24 N -0.92 -47.84 13.05 21.66 0.28 -47.56 16 25 Si 0.99 40.82 29.55 68.60 2.03 42.84 16 26 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 27 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 28 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.04 0.76 6.85 -2.39 -0.02 0.74 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 1.04 6.23 -2.39 -0.01 1.03 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.05 1.19 6.57 -2.39 -0.02 1.18 16 36 H 0.42 6.10 8.14 -92.71 -0.75 5.34 16 37 H 0.17 1.35 7.77 -2.39 -0.02 1.33 16 38 H 0.16 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.10 1.54 7.77 -2.39 -0.02 1.52 16 42 H 0.35 8.41 7.23 -89.70 -0.65 7.76 16 43 H 0.06 1.62 6.49 -2.39 -0.02 1.61 16 44 H 0.10 2.62 6.15 -2.39 -0.01 2.60 16 45 H 0.39 18.00 7.90 -92.71 -0.73 17.27 16 46 H 0.28 13.45 8.31 -92.71 -0.77 12.68 16 Total: -1.00 -74.69 390.51 0.04 -74.65 By element: Atomic # 1 Polarization: 37.09 SS G_CDS: -1.08 Total: 36.01 kcal Atomic # 6 Polarization: 14.25 SS G_CDS: 5.94 Total: 20.19 kcal Atomic # 7 Polarization: -118.71 SS G_CDS: -7.71 Total: -126.42 kcal Atomic # 8 Polarization: -48.14 SS G_CDS: 0.86 Total: -47.28 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.84 kcal Total: -74.69 0.04 -74.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318589856.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.238 kcal (2) G-P(sol) polarization free energy of solvation -74.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds