Wall clock time and date at job start Tue Mar 31 2020 22:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30852 * 125.42428 * 2 1 4 4 C 1.33322 * 109.69028 * 179.73421 * 3 2 1 5 5 C 1.36665 * 107.78324 * 0.02562 * 4 3 2 6 6 C 1.46755 * 126.84085 * 179.97438 * 5 4 3 7 7 O 1.21680 * 120.00826 * 351.16004 * 6 5 4 8 8 N 1.34780 * 120.00061 * 171.15417 * 6 5 4 9 9 C 1.46502 * 119.99765 * 1.33507 * 8 6 5 10 10 C 1.53003 * 109.47357 * 82.49262 * 9 8 6 11 11 O 1.42903 * 109.46698 * 65.00251 * 10 9 8 12 12 C 1.46500 * 120.00428 * 181.32687 * 8 6 5 13 13 C 1.53003 * 109.46768 * 90.00317 * 12 8 6 14 14 N 1.46905 * 109.46816 * 180.02562 * 13 12 8 15 15 C 1.46897 * 110.99851 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47040 * 180.02562 * 15 14 13 17 17 O 1.21291 * 120.00302 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00137 * 180.02562 * 16 15 14 19 19 C 1.37095 * 120.00377 * 179.97438 * 18 16 15 20 20 H 1.08002 * 119.99689 * 0.02562 * 19 18 16 21 21 C 1.38947 * 120.00245 * 179.97438 * 19 18 16 22 22 N 1.31417 * 119.99963 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00219 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47043 * 60.00524 * 23 21 19 25 25 H 1.48500 * 109.47240 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46903 * 300.00707 * 23 21 19 27 27 N 1.34506 * 125.41389 * 179.69206 * 2 1 3 28 28 H 0.96995 * 126.47226 * 0.24452 * 27 2 1 29 29 H 1.09002 * 109.47151 * 90.02341 * 1 2 3 30 30 H 1.09001 * 109.47583 * 210.02657 * 1 2 3 31 31 H 1.09003 * 109.46693 * 330.02430 * 1 2 3 32 32 H 1.07996 * 126.10571 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.47268 * 202.49715 * 9 8 6 34 34 H 1.09004 * 109.47084 * 322.49584 * 9 8 6 35 35 H 1.09005 * 109.47096 * 185.00120 * 10 9 8 36 36 H 1.08995 * 109.47390 * 305.00076 * 10 9 8 37 37 H 0.96699 * 113.99521 * 179.97438 * 11 10 9 38 38 H 1.09000 * 109.47302 * 210.00593 * 12 8 6 39 39 H 1.08998 * 109.46974 * 330.00415 * 12 8 6 40 40 H 1.08997 * 109.46928 * 300.00124 * 13 12 8 41 41 H 1.09001 * 109.46612 * 60.00574 * 13 12 8 42 42 H 1.00899 * 110.99906 * 56.04262 * 14 13 12 43 43 H 1.08999 * 109.47385 * 300.00595 * 15 14 13 44 44 H 1.09005 * 109.47130 * 59.99976 * 15 14 13 45 45 H 0.97007 * 120.00039 * 359.97438 * 18 16 15 46 46 H 0.96999 * 119.99560 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0663 0.0000 4 6 3.5487 0.7048 0.0058 5 6 3.5975 -0.6610 0.0091 6 6 4.8027 -1.4984 0.0152 7 8 5.8971 -0.9909 -0.1441 8 7 4.6975 -2.8297 0.1973 9 6 3.3777 -3.4446 0.3600 10 6 2.7498 -3.6761 -1.0158 11 8 3.5263 -4.6334 -1.7388 12 6 5.9026 -3.6618 0.2324 13 6 6.4105 -3.7632 1.6722 14 7 7.6194 -4.5972 1.7073 15 6 8.1361 -4.7177 3.0771 16 6 9.3736 -5.5776 3.0733 17 8 9.7845 -6.0446 2.0320 18 7 10.0234 -5.8287 4.2271 19 6 11.1489 -6.6114 4.2237 20 1 11.5152 -7.0265 3.2964 21 6 11.8190 -6.8698 5.4132 22 7 11.3736 -6.3643 6.5415 23 14 13.3522 -7.9369 5.4087 24 1 14.3858 -7.3148 4.5426 25 1 13.8744 -8.0590 6.7935 26 1 13.0151 -9.2856 4.8865 27 7 2.2864 -1.0962 0.0059 28 1 1.9848 -2.0181 0.0075 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3634 -0.8897 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 4.3978 1.3720 0.0068 33 1 3.4826 -4.3986 0.8768 34 1 2.7382 -2.7831 0.9446 35 1 1.7335 -4.0508 -0.8930 36 1 2.7263 -2.7363 -1.5674 37 1 3.1855 -4.8298 -2.6222 38 1 5.6670 -4.6585 -0.1408 39 1 6.6731 -3.2121 -0.3938 40 1 6.6461 -2.7666 2.0453 41 1 5.6400 -4.2131 2.2983 42 1 8.3261 -4.2360 1.0843 43 1 8.3831 -3.7278 3.4607 44 1 7.3776 -5.1748 3.7127 45 1 9.6946 -5.4556 5.0600 46 1 11.8413 -6.5450 7.3719 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325989217.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:26 Heat of formation + Delta-G solvation = -31.205328 kcal Electronic energy + Delta-G solvation = -28972.022511 eV Core-core repulsion = 24706.052312 eV Total energy + Delta-G solvation = -4265.970199 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.88405 -40.01982 -38.25035 -37.83247 -36.22536 -35.18178 -33.85060 -33.25126 -32.39881 -31.21729 -30.55183 -29.19366 -27.71618 -26.00067 -24.25420 -23.87386 -22.82800 -22.14452 -21.32763 -20.23087 -19.20928 -18.18201 -18.12559 -17.85783 -16.78292 -16.64158 -16.29496 -16.05414 -15.49828 -15.45575 -14.98816 -14.57080 -14.50008 -14.38960 -14.12245 -13.94302 -13.77694 -13.59468 -13.45233 -13.20848 -13.11068 -13.03321 -12.86959 -12.29854 -12.08698 -12.02473 -11.50394 -11.47711 -11.10190 -10.95251 -10.81781 -10.75542 -10.54235 -10.42039 -10.27271 -10.18692 -9.47349 -9.22027 -8.86976 -8.43099 -8.05393 -7.93242 -6.38930 -3.79723 0.86508 2.25695 2.36191 2.55817 2.96707 3.22468 3.27716 3.32458 3.42162 3.81021 3.93941 3.98539 4.14883 4.22916 4.33652 4.41333 4.45862 4.54030 4.63169 4.80182 4.88971 4.96721 5.00187 5.07682 5.19360 5.22332 5.29851 5.30690 5.35353 5.54124 5.77403 5.86478 5.88698 6.01236 6.09424 6.16826 6.30401 6.63553 6.89357 7.03493 7.19944 7.46350 7.57729 7.65726 7.76317 8.08888 8.64211 9.20486 9.57074 10.08723 10.78802 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022364 B = 0.001850 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.712570 B =15134.638250 C =15663.886638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.231 3.769 3 N -0.494 5.494 4 C 0.075 3.925 5 C -0.089 4.089 6 C 0.592 3.408 7 O -0.516 6.516 8 N -0.599 5.599 9 C 0.087 3.913 10 C 0.042 3.958 11 O -0.553 6.553 12 C 0.123 3.877 13 C 0.045 3.955 14 N -0.665 5.665 15 C 0.053 3.947 16 C 0.441 3.559 17 O -0.582 6.582 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.932 3.068 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 N -0.564 5.564 28 H 0.423 0.577 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.186 0.814 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.049 0.951 37 H 0.383 0.617 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.031 0.969 41 H 0.069 0.931 42 H 0.352 0.648 43 H 0.044 0.956 44 H 0.085 0.915 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.806 10.101 -12.464 32.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.032 4.032 3 N -0.214 5.214 4 C -0.079 4.079 5 C -0.204 4.204 6 C 0.380 3.620 7 O -0.390 6.390 8 N -0.331 5.331 9 C -0.038 4.038 10 C -0.038 4.038 11 O -0.359 6.359 12 C 0.001 3.999 13 C -0.086 4.086 14 N -0.298 5.298 15 C -0.080 4.080 16 C 0.227 3.773 17 O -0.466 6.466 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.759 3.241 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 N -0.179 5.179 28 H 0.271 0.729 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.116 0.884 32 H 0.203 0.797 33 H 0.127 0.873 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.231 0.769 38 H 0.116 0.884 39 H 0.105 0.895 40 H 0.049 0.951 41 H 0.087 0.913 42 H 0.171 0.829 43 H 0.062 0.938 44 H 0.103 0.897 45 H 0.225 0.775 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -27.081 10.229 -12.475 31.522 hybrid contribution 0.606 -0.700 0.377 0.999 sum -26.476 9.529 -12.098 30.629 Atomic orbital electron populations 1.20332 0.84174 1.04727 1.04155 1.23580 0.96039 0.81939 1.01670 1.70214 1.02100 1.28335 1.20734 1.22718 0.94815 0.91161 0.99158 1.21179 0.83620 0.96038 1.19543 1.16946 0.87008 0.81177 0.76868 1.90887 1.26368 1.72501 1.49288 1.47665 1.07179 1.06322 1.71969 1.22074 0.85015 1.00916 0.95766 1.22911 0.94497 0.92777 0.93608 1.86578 1.54651 1.61944 1.32708 1.21487 0.85932 0.95526 0.96987 1.22275 0.93964 0.95550 0.96773 1.59998 1.08070 1.53347 1.08432 1.21655 0.97103 0.98712 0.90558 1.19787 0.86370 0.86231 0.84931 1.90522 1.68940 1.55523 1.31661 1.41853 1.25038 1.45380 1.07785 1.19663 1.02108 1.25643 0.95480 0.87948 1.25268 0.99678 0.98328 0.94722 1.69610 1.41039 1.45155 0.98587 0.85905 0.81062 0.80120 0.77045 1.19907 1.21000 1.19901 1.44540 1.06257 1.10654 1.56477 0.72852 0.89492 0.90407 0.88435 0.79742 0.87305 0.89260 0.92028 0.93326 0.76913 0.88372 0.89487 0.95101 0.91291 0.82880 0.93794 0.89672 0.77461 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.21 10.51 36.00 0.38 0.17 16 2 C 0.23 1.64 8.12 -155.61 -1.26 0.38 16 3 N -0.49 -5.10 11.20 -10.58 -0.12 -5.22 16 4 C 0.08 0.81 11.67 -17.47 -0.20 0.61 16 5 C -0.09 -0.90 6.40 -82.15 -0.53 -1.42 16 6 C 0.59 7.21 7.57 -12.82 -0.10 7.11 16 7 O -0.52 -8.18 16.48 5.21 0.09 -8.10 16 8 N -0.60 -6.08 2.44 -175.20 -0.43 -6.50 16 9 C 0.09 0.54 5.32 -4.04 -0.02 0.52 16 10 C 0.04 0.19 5.88 37.16 0.22 0.41 16 11 O -0.55 -3.72 13.40 -35.23 -0.47 -4.20 16 12 C 0.12 1.49 5.64 -4.04 -0.02 1.47 16 13 C 0.05 0.61 6.01 -3.82 -0.02 0.59 16 14 N -0.67 -11.36 6.13 -115.06 -0.70 -12.06 16 15 C 0.05 0.97 6.17 -4.98 -0.03 0.94 16 16 C 0.44 10.77 7.82 -10.99 -0.09 10.68 16 17 O -0.58 -16.24 15.78 5.55 0.09 -16.16 16 18 N -0.56 -14.67 5.29 -10.97 -0.06 -14.73 16 19 C -0.30 -8.52 9.68 -14.94 -0.14 -8.67 16 20 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.94 13.05 55.50 0.72 -24.21 16 23 Si 0.93 21.40 29.55 -169.99 -5.02 16.37 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 27 N -0.56 -3.70 4.31 -7.02 -0.03 -3.73 16 28 H 0.42 1.61 3.76 -40.82 -0.15 1.46 16 29 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 31 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.19 1.86 8.06 -52.49 -0.42 1.43 16 33 H 0.11 0.65 8.02 -51.93 -0.42 0.23 16 34 H 0.09 0.40 5.10 -51.93 -0.26 0.14 16 35 H 0.06 0.09 8.14 -51.93 -0.42 -0.33 16 36 H 0.05 0.25 6.63 -51.93 -0.34 -0.09 16 37 H 0.38 1.02 9.12 45.56 0.42 1.43 16 38 H 0.10 1.19 7.87 -51.93 -0.41 0.78 16 39 H 0.09 1.20 7.40 -51.93 -0.38 0.82 16 40 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.35 6.31 8.43 -39.29 -0.33 5.98 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 45 H 0.39 9.74 7.90 -40.82 -0.32 9.42 16 46 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 388.12 15.07 5.85 5.85 Total: -1.00 -37.82 388.12 -7.53 -45.35 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -5.53 Total: 14.05 kcal Atomic # 6 Polarization: 15.20 SS G_CDS: -1.92 Total: 13.29 kcal Atomic # 7 Polarization: -65.84 SS G_CDS: -0.61 Total: -66.46 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -0.30 Total: -28.45 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.82 -7.53 -45.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325989217.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.146 kcal (2) G-P(sol) polarization free energy of solvation -37.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds