Wall clock time and date at job start Tue Mar 31 2020 22:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30852 * 125.42428 * 2 1 4 4 C 1.33322 * 109.69028 * 179.73421 * 3 2 1 5 5 C 1.36665 * 107.78324 * 0.02562 * 4 3 2 6 6 C 1.46755 * 126.84085 * 179.97438 * 5 4 3 7 7 O 1.21680 * 120.00826 * 351.16004 * 6 5 4 8 8 N 1.34780 * 120.00061 * 171.15417 * 6 5 4 9 9 C 1.46502 * 119.99765 * 1.33507 * 8 6 5 10 10 C 1.53003 * 109.47357 * 82.49262 * 9 8 6 11 11 O 1.42903 * 109.46698 * 65.00251 * 10 9 8 12 12 C 1.46500 * 120.00428 * 181.32687 * 8 6 5 13 13 C 1.53003 * 109.46768 * 90.00317 * 12 8 6 14 14 N 1.46905 * 109.46816 * 180.02562 * 13 12 8 15 15 C 1.46897 * 110.99851 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47040 * 180.02562 * 15 14 13 17 17 O 1.21291 * 120.00302 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00137 * 180.02562 * 16 15 14 19 19 C 1.37095 * 120.00377 * 179.97438 * 18 16 15 20 20 H 1.08002 * 119.99689 * 0.02562 * 19 18 16 21 21 C 1.38947 * 120.00245 * 179.97438 * 19 18 16 22 22 N 1.31417 * 119.99963 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00219 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47043 * 60.00524 * 23 21 19 25 25 H 1.48500 * 109.47240 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46903 * 300.00707 * 23 21 19 27 27 N 1.34506 * 125.41389 * 179.69206 * 2 1 3 28 28 H 0.96995 * 126.47226 * 0.24452 * 27 2 1 29 29 H 1.09002 * 109.47151 * 90.02341 * 1 2 3 30 30 H 1.09001 * 109.47583 * 210.02657 * 1 2 3 31 31 H 1.09003 * 109.46693 * 330.02430 * 1 2 3 32 32 H 1.07996 * 126.10571 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.47268 * 202.49715 * 9 8 6 34 34 H 1.09004 * 109.47084 * 322.49584 * 9 8 6 35 35 H 1.09005 * 109.47096 * 185.00120 * 10 9 8 36 36 H 1.08995 * 109.47390 * 305.00076 * 10 9 8 37 37 H 0.96699 * 113.99521 * 179.97438 * 11 10 9 38 38 H 1.09000 * 109.47302 * 210.00593 * 12 8 6 39 39 H 1.08998 * 109.46974 * 330.00415 * 12 8 6 40 40 H 1.08997 * 109.46928 * 300.00124 * 13 12 8 41 41 H 1.09001 * 109.46612 * 60.00574 * 13 12 8 42 42 H 1.00899 * 110.99906 * 56.04262 * 14 13 12 43 43 H 1.08999 * 109.47385 * 300.00595 * 15 14 13 44 44 H 1.09005 * 109.47130 * 59.99976 * 15 14 13 45 45 H 0.97007 * 120.00039 * 359.97438 * 18 16 15 46 46 H 0.96999 * 119.99560 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0663 0.0000 4 6 3.5487 0.7048 0.0058 5 6 3.5975 -0.6610 0.0091 6 6 4.8027 -1.4984 0.0152 7 8 5.8971 -0.9909 -0.1441 8 7 4.6975 -2.8297 0.1973 9 6 3.3777 -3.4446 0.3600 10 6 2.7498 -3.6761 -1.0158 11 8 3.5263 -4.6334 -1.7388 12 6 5.9026 -3.6618 0.2324 13 6 6.4105 -3.7632 1.6722 14 7 7.6194 -4.5972 1.7073 15 6 8.1361 -4.7177 3.0771 16 6 9.3736 -5.5776 3.0733 17 8 9.7845 -6.0446 2.0320 18 7 10.0234 -5.8287 4.2271 19 6 11.1489 -6.6114 4.2237 20 1 11.5152 -7.0265 3.2964 21 6 11.8190 -6.8698 5.4132 22 7 11.3736 -6.3643 6.5415 23 14 13.3522 -7.9369 5.4087 24 1 14.3858 -7.3148 4.5426 25 1 13.8744 -8.0590 6.7935 26 1 13.0151 -9.2856 4.8865 27 7 2.2864 -1.0962 0.0059 28 1 1.9848 -2.0181 0.0075 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3634 -0.8897 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 4.3978 1.3720 0.0068 33 1 3.4826 -4.3986 0.8768 34 1 2.7382 -2.7831 0.9446 35 1 1.7335 -4.0508 -0.8930 36 1 2.7263 -2.7363 -1.5674 37 1 3.1855 -4.8298 -2.6222 38 1 5.6670 -4.6585 -0.1408 39 1 6.6731 -3.2121 -0.3938 40 1 6.6461 -2.7666 2.0453 41 1 5.6400 -4.2131 2.2983 42 1 8.3261 -4.2360 1.0843 43 1 8.3831 -3.7278 3.4607 44 1 7.3776 -5.1748 3.7127 45 1 9.6946 -5.4556 5.0600 46 1 11.8413 -6.5450 7.3719 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325989217.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:25 Heat of formation + Delta-G solvation = -63.863707 kcal Electronic energy + Delta-G solvation = -28973.438685 eV Core-core repulsion = 24706.052312 eV Total energy + Delta-G solvation = -4267.386373 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.54596 -40.88307 -40.16293 -38.45703 -37.32115 -36.24956 -35.79266 -34.04493 -33.29398 -32.91493 -31.39312 -30.06039 -28.54893 -27.46404 -25.80325 -24.56090 -23.84155 -22.91605 -22.09661 -21.16997 -20.85439 -19.93254 -18.88527 -18.59556 -17.92069 -17.58711 -17.38601 -17.01283 -16.88910 -16.48881 -16.05724 -15.95591 -15.68380 -15.40905 -15.17374 -15.04476 -14.87310 -14.70982 -14.35600 -14.07163 -13.90887 -13.70043 -13.51982 -13.47701 -13.28847 -13.21261 -12.94494 -12.80281 -12.62950 -12.44509 -12.13052 -12.12167 -11.58307 -11.51872 -11.34325 -11.18491 -10.96797 -10.42612 -10.04964 -10.03840 -9.56382 -9.46572 -8.47851 -5.97075 0.12391 1.39354 1.41100 1.51120 1.53281 1.65948 1.89726 2.02080 2.15036 2.28797 2.91587 3.08685 3.18796 3.20889 3.46338 3.51640 3.76634 3.87877 3.99555 4.04720 4.11402 4.13535 4.25043 4.28271 4.32351 4.44105 4.45425 4.52966 4.54400 4.58395 4.76329 4.77840 4.81827 4.90373 5.12810 5.23227 5.39401 5.40619 5.80049 6.03408 6.07526 6.17703 6.24323 6.57771 6.78431 6.81898 6.87644 7.10342 7.53146 8.08349 8.69314 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022364 B = 0.001850 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.712570 B =15134.638250 C =15663.886638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.247 3.753 3 N -0.529 5.529 4 C 0.059 3.941 5 C -0.100 4.100 6 C 0.589 3.411 7 O -0.566 6.566 8 N -0.593 5.593 9 C 0.076 3.924 10 C 0.042 3.958 11 O -0.582 6.582 12 C 0.133 3.867 13 C 0.055 3.945 14 N -0.675 5.675 15 C 0.066 3.934 16 C 0.437 3.563 17 O -0.622 6.622 18 N -0.572 5.572 19 C -0.336 4.336 20 H 0.080 0.920 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.995 3.005 24 H -0.272 1.272 25 H -0.269 1.269 26 H -0.271 1.271 27 N -0.547 5.547 28 H 0.437 0.563 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.178 0.822 33 H 0.117 0.883 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.042 0.958 37 H 0.399 0.601 38 H 0.102 0.898 39 H 0.063 0.937 40 H 0.021 0.979 41 H 0.089 0.911 42 H 0.343 0.657 43 H 0.061 0.939 44 H 0.109 0.891 45 H 0.397 0.603 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.679 9.330 -11.962 34.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.017 4.017 3 N -0.249 5.249 4 C -0.095 4.095 5 C -0.215 4.215 6 C 0.378 3.622 7 O -0.445 6.445 8 N -0.324 5.324 9 C -0.047 4.047 10 C -0.037 4.037 11 O -0.390 6.390 12 C 0.010 3.990 13 C -0.075 4.075 14 N -0.307 5.307 15 C -0.066 4.066 16 C 0.225 3.775 17 O -0.509 6.509 18 N -0.209 5.209 19 C -0.466 4.466 20 H 0.098 0.902 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.819 3.181 24 H -0.198 1.198 25 H -0.194 1.194 26 H -0.196 1.196 27 N -0.163 5.163 28 H 0.289 0.711 29 H 0.123 0.877 30 H 0.128 0.872 31 H 0.117 0.883 32 H 0.195 0.805 33 H 0.135 0.865 34 H 0.127 0.873 35 H 0.123 0.877 36 H 0.060 0.940 37 H 0.249 0.751 38 H 0.120 0.880 39 H 0.082 0.918 40 H 0.040 0.960 41 H 0.107 0.893 42 H 0.162 0.838 43 H 0.079 0.921 44 H 0.127 0.873 45 H 0.231 0.769 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -30.035 9.428 -11.962 33.676 hybrid contribution 1.372 -0.437 0.187 1.452 sum -28.663 8.991 -11.775 32.265 Atomic orbital electron populations 1.20617 0.80658 1.06374 1.05812 1.24450 0.97639 0.81106 0.98480 1.70225 1.02003 1.30102 1.22602 1.22781 0.95335 0.91724 0.99614 1.20761 0.84328 0.95424 1.21013 1.17229 0.86992 0.81764 0.76178 1.90852 1.28292 1.73561 1.51798 1.47682 1.08194 1.05594 1.70946 1.22460 0.83243 1.01394 0.97561 1.22985 0.96067 0.92507 0.92106 1.86525 1.55994 1.62400 1.34106 1.21229 0.86426 0.95647 0.95718 1.22272 0.92824 0.94536 0.97907 1.60023 1.08769 1.54521 1.07393 1.21529 0.94814 0.98295 0.91981 1.20788 0.87324 0.85666 0.83752 1.90490 1.70363 1.57071 1.32935 1.41916 1.24912 1.45521 1.08523 1.19655 1.03980 1.27654 0.95293 0.90244 1.26079 1.02225 0.99039 0.93987 1.69672 1.41991 1.45394 0.99002 0.84959 0.77252 0.78257 0.77676 1.19766 1.19377 1.19588 1.44395 1.04701 1.11409 1.55836 0.71142 0.87662 0.87211 0.88345 0.80519 0.86493 0.87287 0.87703 0.93963 0.75083 0.87986 0.91841 0.96040 0.89279 0.83831 0.92127 0.87253 0.76947 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.13 10.51 71.23 0.75 0.62 16 2 C 0.25 2.94 8.12 138.19 1.12 4.06 16 3 N -0.53 -10.59 11.20 -187.39 -2.10 -12.68 16 4 C 0.06 1.32 11.67 84.10 0.98 2.31 16 5 C -0.10 -1.98 6.40 40.01 0.26 -1.73 16 6 C 0.59 14.63 7.57 86.47 0.65 15.28 16 7 O -0.57 -19.10 16.48 -4.28 -0.07 -19.17 16 8 N -0.59 -11.65 2.44 -826.42 -2.02 -13.67 16 9 C 0.08 0.75 5.32 86.38 0.46 1.21 16 10 C 0.04 0.27 5.88 71.98 0.42 0.69 16 11 O -0.58 -6.71 13.40 -148.98 -2.00 -8.70 16 12 C 0.13 3.24 5.64 86.38 0.49 3.73 16 13 C 0.05 1.44 6.01 86.30 0.52 1.96 16 14 N -0.67 -22.90 6.13 -517.93 -3.17 -26.07 16 15 C 0.07 2.41 6.17 85.56 0.53 2.94 16 16 C 0.44 21.62 7.82 87.66 0.69 22.31 16 17 O -0.62 -35.64 15.78 -3.06 -0.05 -35.69 16 18 N -0.57 -30.19 5.29 -306.99 -1.62 -31.81 16 19 C -0.34 -19.53 9.68 84.04 0.81 -18.72 16 20 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 21 C -0.01 -0.73 5.50 84.92 0.47 -0.27 16 22 N -0.92 -50.37 13.05 21.66 0.28 -50.09 16 23 Si 1.00 43.59 29.55 68.60 2.03 45.62 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 27 N -0.55 -5.93 4.31 -176.12 -0.76 -6.68 16 28 H 0.44 1.82 3.76 -92.71 -0.35 1.47 16 29 H 0.10 -0.11 8.14 -2.39 -0.02 -0.13 16 30 H 0.11 -0.47 8.14 -2.39 -0.02 -0.49 16 31 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.18 3.95 8.06 -2.91 -0.02 3.92 16 33 H 0.12 1.03 8.02 -2.39 -0.02 1.02 16 34 H 0.11 0.62 5.10 -2.38 -0.01 0.61 16 35 H 0.11 -0.19 8.14 -2.38 -0.02 -0.21 16 36 H 0.04 0.33 6.63 -2.39 -0.02 0.32 16 37 H 0.40 1.39 9.12 -74.06 -0.68 0.71 16 38 H 0.10 2.42 7.87 -2.39 -0.02 2.40 16 39 H 0.06 1.86 7.40 -2.39 -0.02 1.84 16 40 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.34 12.65 8.43 -89.69 -0.76 11.90 16 43 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.11 3.48 8.14 -2.38 -0.02 3.46 16 45 H 0.40 19.84 7.90 -92.70 -0.73 19.11 16 46 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -85.17 388.12 -2.78 -87.94 By element: Atomic # 1 Polarization: 38.08 SS G_CDS: -1.45 Total: 36.63 kcal Atomic # 6 Polarization: 26.24 SS G_CDS: 8.14 Total: 34.39 kcal Atomic # 7 Polarization: -131.63 SS G_CDS: -9.39 Total: -141.01 kcal Atomic # 8 Polarization: -61.45 SS G_CDS: -2.12 Total: -63.57 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -85.17 -2.78 -87.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325989217.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.078 kcal (2) G-P(sol) polarization free energy of solvation -85.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds