Wall clock time and date at job start Tue Mar 31 2020 22:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99935 * 2 1 4 4 C 1.52997 * 109.47660 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47012 * 64.99884 * 4 3 2 6 6 C 1.46498 * 120.00440 * 264.85648 * 5 4 3 7 7 C 1.50707 * 109.46784 * 263.15176 * 6 5 4 8 8 H 1.07997 * 120.00402 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99778 * 179.97438 * 7 6 5 10 10 N 1.31520 * 120.00255 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99947 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47117 * 59.99581 * 11 9 7 13 13 H 1.48502 * 109.47140 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46910 * 299.99573 * 11 9 7 15 15 C 1.34773 * 119.99859 * 84.85318 * 5 4 3 16 16 O 1.21361 * 120.00121 * 3.92549 * 15 5 4 17 17 C 1.49351 * 120.00375 * 183.92950 * 15 5 4 18 18 O 1.21380 * 119.99717 * 355.01149 * 17 15 5 19 19 N 1.34776 * 120.00167 * 175.00955 * 17 15 5 20 20 C 1.39661 * 119.99574 * 180.02562 * 19 17 15 21 21 N 1.33665 * 125.61427 * 359.97350 * 20 19 17 22 22 C 1.30836 * 109.78504 * 179.97438 * 21 20 19 23 23 N 1.34398 * 108.20969 * 359.97438 * 22 21 20 24 24 C 1.46507 * 126.76090 * 179.74215 * 23 22 21 25 25 C 1.53001 * 109.47084 * 275.00006 * 24 23 22 26 26 C 1.52999 * 109.47405 * 35.00080 * 24 23 22 27 27 N 1.31221 * 125.60558 * 179.97438 * 20 19 17 28 28 H 1.09000 * 109.46459 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47527 * 299.99967 * 1 2 3 30 30 H 1.09004 * 109.47057 * 60.00519 * 1 2 3 31 31 H 1.09006 * 109.46859 * 60.00087 * 3 2 1 32 32 H 1.08997 * 109.47578 * 300.00449 * 3 2 1 33 33 H 1.09005 * 109.47067 * 305.00370 * 4 3 2 34 34 H 1.08992 * 109.47655 * 185.00657 * 4 3 2 35 35 H 1.09000 * 109.46953 * 23.14883 * 6 5 4 36 36 H 1.08993 * 109.47657 * 143.15439 * 6 5 4 37 37 H 0.96995 * 119.99842 * 179.97438 * 10 9 7 38 38 H 0.97000 * 120.00258 * 359.97438 * 19 17 15 39 39 H 1.07994 * 125.89385 * 180.02562 * 22 21 20 40 40 H 1.09005 * 109.47207 * 155.00682 * 24 23 22 41 41 H 1.09000 * 109.47161 * 59.99936 * 25 24 23 42 42 H 1.09002 * 109.47407 * 179.97438 * 25 24 23 43 43 H 1.09006 * 109.47370 * 300.00423 * 25 24 23 44 44 H 1.08990 * 109.47030 * 179.97438 * 26 24 23 45 45 H 1.08996 * 109.47155 * 300.00483 * 26 24 23 46 46 H 1.09005 * 109.46537 * 60.00121 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5642 -1.2508 6 6 4.2150 -0.8802 -1.3081 7 6 5.6848 -1.1546 -1.1195 8 1 6.3726 -0.3351 -0.9722 9 6 6.1513 -2.4519 -1.1350 10 7 5.3137 -3.4499 -1.3139 11 14 7.9731 -2.7922 -0.9006 12 1 8.4082 -2.2701 0.4197 13 1 8.2145 -4.2563 -0.9575 14 1 8.7446 -2.1206 -1.9772 15 6 4.1634 1.3220 -2.3496 16 8 4.0352 2.5270 -2.2846 17 6 4.5279 0.6788 -3.6473 18 8 4.7447 -0.5146 -3.6933 19 7 4.6160 1.4234 -4.7672 20 6 4.9564 0.8218 -5.9808 21 7 5.2174 -0.4769 -6.1595 22 6 5.5002 -0.7029 -7.4167 23 7 5.4248 0.4634 -8.0804 24 6 5.6695 0.6767 -9.5090 25 6 7.1680 0.8745 -9.7458 26 6 5.1851 -0.5421 -10.2970 27 7 5.0726 1.4385 -7.1332 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6885 1.8464 0.8901 32 1 1.6886 1.8465 -0.8899 33 1 3.8508 0.5687 0.8427 34 1 3.9784 2.1766 0.0903 35 1 3.6489 -1.3733 -0.5178 36 1 3.8953 -1.2631 -2.2772 37 1 5.6420 -4.3626 -1.3251 38 1 4.4424 2.3771 -4.7305 39 1 5.7502 -1.6613 -7.8471 40 1 5.1290 1.5629 -9.8419 41 1 7.7085 -0.0116 -9.4130 42 1 7.3502 1.0327 -10.8088 43 1 7.5132 1.7428 -9.1844 44 1 5.3667 -0.3831 -11.3598 45 1 5.7255 -1.4282 -9.9641 46 1 4.1175 -0.6829 -10.1283 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327296574.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:10 Heat of formation + Delta-G solvation = -9.829272 kcal Electronic energy + Delta-G solvation = -30274.091379 eV Core-core repulsion = 26009.048116 eV Total energy + Delta-G solvation = -4265.043264 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.24380 -41.73309 -39.70084 -38.65867 -37.48812 -36.84041 -35.38979 -34.53182 -32.50528 -31.46675 -30.89316 -28.97326 -28.20728 -27.40110 -26.36123 -24.82026 -24.66585 -23.92704 -22.04594 -21.73796 -20.46842 -19.05671 -18.50731 -18.30150 -17.91257 -17.43563 -17.26219 -17.01077 -16.89198 -16.61214 -16.20843 -16.06213 -15.79782 -15.42252 -15.27980 -14.98627 -14.73938 -14.26521 -14.10013 -13.63970 -13.47890 -13.38519 -13.19983 -13.12334 -13.09788 -12.85813 -12.79329 -12.69907 -12.52746 -12.33251 -12.08435 -12.02867 -11.92062 -11.78453 -11.62883 -11.01773 -10.89654 -10.63919 -10.57751 -10.10344 -9.78711 -9.55832 -8.08499 -6.18270 0.20549 0.74011 0.81725 1.39166 1.43215 1.49294 1.61715 1.83969 2.36554 2.40680 2.51772 2.93404 3.21215 3.24816 3.44036 3.68847 3.91764 4.04261 4.11409 4.13366 4.18345 4.34356 4.38794 4.52483 4.54445 4.58606 4.67444 4.71956 4.84384 4.84444 4.85656 4.88005 4.99062 5.09703 5.24092 5.27716 5.37509 5.49077 5.61378 5.78264 5.83618 6.01287 6.16332 6.24178 6.35679 6.70507 6.86239 7.05168 7.20413 7.47470 8.99775 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009550 B = 0.003700 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2931.194703 B = 7566.438482 C = 9390.266432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.414 6.414 3 C 0.053 3.947 4 C 0.110 3.890 5 N -0.553 5.553 6 C 0.251 3.749 7 C -0.530 4.530 8 H 0.044 0.956 9 C 0.023 3.977 10 N -0.918 5.918 11 Si 0.953 3.047 12 H -0.265 1.265 13 H -0.278 1.278 14 H -0.284 1.284 15 C 0.513 3.487 16 O -0.557 6.557 17 C 0.487 3.513 18 O -0.431 6.431 19 N -0.608 5.608 20 C 0.432 3.568 21 N -0.571 5.571 22 C 0.275 3.725 23 N -0.364 5.364 24 C 0.144 3.856 25 C -0.160 4.160 26 C -0.160 4.160 27 N -0.351 5.351 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.093 0.907 32 H 0.045 0.955 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.022 0.978 36 H 0.046 0.954 37 H 0.263 0.737 38 H 0.435 0.565 39 H 0.259 0.741 40 H 0.108 0.892 41 H 0.065 0.935 42 H 0.109 0.891 43 H 0.044 0.956 44 H 0.112 0.888 45 H 0.079 0.921 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.518 8.548 -14.846 17.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.333 6.333 3 C -0.024 4.024 4 C -0.012 4.012 5 N -0.283 5.283 6 C 0.131 3.869 7 C -0.569 4.569 8 H 0.063 0.937 9 C -0.177 4.177 10 N -0.557 5.557 11 Si 0.779 3.221 12 H -0.190 1.190 13 H -0.203 1.203 14 H -0.210 1.210 15 C 0.295 3.705 16 O -0.438 6.438 17 C 0.266 3.734 18 O -0.295 6.295 19 N -0.265 5.265 20 C 0.063 3.937 21 N -0.302 5.302 22 C -0.022 4.022 23 N -0.157 5.157 24 C 0.044 3.956 25 C -0.218 4.218 26 C -0.218 4.218 27 N -0.188 5.188 28 H 0.105 0.895 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.111 0.889 32 H 0.063 0.937 33 H 0.110 0.890 34 H 0.126 0.874 35 H 0.040 0.960 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.275 0.725 39 H 0.275 0.725 40 H 0.126 0.874 41 H 0.084 0.916 42 H 0.128 0.872 43 H 0.063 0.937 44 H 0.131 0.869 45 H 0.098 0.902 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.465 8.385 -14.629 17.215 hybrid contribution 0.687 0.120 0.119 0.707 sum -2.779 8.506 -14.511 17.048 Atomic orbital electron populations 1.22877 0.79827 1.03348 1.00765 1.88010 1.21335 1.28463 1.95535 1.22974 0.92929 0.84852 1.01670 1.21832 0.93478 1.00259 0.85606 1.48142 1.60273 1.10849 1.09021 1.19511 0.95370 0.73504 0.98497 1.21426 0.93437 0.92267 1.49725 0.93748 1.25548 1.01546 0.95841 0.94728 1.70041 1.36046 0.99344 1.50278 0.85705 0.80689 0.77161 0.78564 1.18985 1.20309 1.21002 1.19534 0.79475 0.86435 0.85047 1.90633 1.54116 1.13328 1.85764 1.20611 0.80157 0.87394 0.85198 1.91029 1.40156 1.14238 1.84091 1.42146 1.68590 1.13127 1.02668 1.20418 0.98081 0.88335 0.86878 1.70663 1.25232 1.15483 1.18814 1.26670 0.94690 0.94668 0.86132 1.50848 1.50861 1.04523 1.09505 1.21838 0.98720 1.02672 0.72371 1.22237 0.92677 1.02373 1.04518 1.22234 1.01981 0.95802 1.01752 1.78028 1.30533 1.13234 0.97006 0.89464 0.91957 0.94026 0.88894 0.93678 0.88991 0.87416 0.96017 0.93658 0.92821 0.72458 0.72520 0.87432 0.91631 0.87211 0.93724 0.86933 0.90221 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.96 16 2 O -0.41 -14.74 10.31 -148.98 -1.54 -16.28 16 3 C 0.05 1.64 6.25 71.98 0.45 2.09 16 4 C 0.11 3.99 5.74 86.38 0.50 4.49 16 5 N -0.55 -25.21 2.43 -827.88 -2.01 -27.22 16 6 C 0.25 13.74 4.65 85.64 0.40 14.14 16 7 C -0.53 -31.02 8.36 25.60 0.21 -30.81 16 8 H 0.04 2.60 7.81 -2.91 -0.02 2.58 16 9 C 0.02 1.36 5.46 84.65 0.46 1.82 16 10 N -0.92 -56.63 13.29 21.45 0.28 -56.34 16 11 Si 0.95 46.64 29.54 68.60 2.03 48.66 16 12 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 13 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 14 H -0.28 -14.06 7.11 99.48 0.71 -13.35 16 15 C 0.51 22.87 7.63 87.24 0.67 23.53 16 16 O -0.56 -23.36 16.12 -3.28 -0.05 -23.41 16 17 C 0.49 22.57 7.74 87.24 0.67 23.25 16 18 O -0.43 -23.49 11.06 -3.34 -0.04 -23.53 16 19 N -0.61 -23.91 5.42 -314.25 -1.70 -25.61 16 20 C 0.43 16.81 8.80 260.87 2.30 19.11 16 21 N -0.57 -22.93 9.37 -201.24 -1.89 -24.82 16 22 C 0.27 7.53 11.77 180.37 2.12 9.65 16 23 N -0.36 -8.97 3.54 -331.45 -1.17 -10.14 16 24 C 0.14 1.98 3.97 44.99 0.18 2.16 16 25 C -0.16 -1.82 9.52 71.98 0.69 -1.14 16 26 C -0.16 -1.20 8.85 71.98 0.64 -0.56 16 27 N -0.35 -11.50 12.72 -58.98 -0.75 -12.25 16 28 H 0.09 2.13 8.14 -2.39 -0.02 2.12 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 32 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.09 3.37 8.03 -2.38 -0.02 3.35 16 34 H 0.11 3.50 7.53 -2.39 -0.02 3.48 16 35 H 0.02 1.26 7.77 -2.39 -0.02 1.24 16 36 H 0.05 2.78 5.37 -2.46 -0.01 2.77 16 37 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 38 H 0.44 14.72 8.30 -92.71 -0.77 13.95 16 39 H 0.26 4.32 7.31 -2.91 -0.02 4.30 16 40 H 0.11 1.41 8.14 -2.38 -0.02 1.40 16 41 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 44 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 45 H 0.08 0.47 7.21 -2.39 -0.02 0.45 16 46 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 Total: -1.00 -83.64 392.07 3.92 -79.71 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.24 Total: 21.51 kcal Atomic # 6 Polarization: 59.17 SS G_CDS: 10.53 Total: 69.70 kcal Atomic # 7 Polarization: -149.13 SS G_CDS: -7.24 Total: -156.38 kcal Atomic # 8 Polarization: -61.59 SS G_CDS: -1.63 Total: -63.22 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.66 kcal Total: -83.64 3.92 -79.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327296574.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.884 kcal (2) G-P(sol) polarization free energy of solvation -83.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds