Wall clock time and date at job start Tue Mar 31 2020 22:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30636 * 128.64128 * 2 1 4 4 O 1.20840 * 109.61644 * 180.02562 * 3 2 1 5 5 N 1.20901 * 115.90663 * 359.69596 * 4 3 2 6 6 C 1.31599 * 109.18458 * 0.49290 * 5 4 3 7 7 C 1.48268 * 128.71788 * 179.82240 * 6 5 4 8 8 O 1.21504 * 120.00154 * 185.35186 * 7 6 5 9 9 N 1.34774 * 120.00074 * 5.34114 * 7 6 5 10 10 C 1.46500 * 119.99902 * 5.29045 * 9 7 6 11 11 C 1.46496 * 120.00459 * 185.28292 * 9 7 6 12 12 C 1.52996 * 109.47649 * 270.00813 * 11 9 7 13 13 C 1.52998 * 109.47690 * 179.97438 * 12 11 9 14 14 N 1.46901 * 109.47293 * 179.97438 * 13 12 11 15 15 C 1.46901 * 110.99602 * 66.04961 * 14 13 12 16 16 C 1.46899 * 110.99910 * 189.99722 * 14 13 12 17 17 C 1.50699 * 109.47145 * 169.99933 * 16 14 13 18 18 O 1.21286 * 119.99973 * 0.02562 * 17 16 14 19 19 N 1.34778 * 119.99804 * 180.02562 * 17 16 14 20 20 C 1.37101 * 119.99570 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00151 * 0.02562 * 20 19 17 22 22 C 1.38946 * 119.99946 * 179.97438 * 20 19 17 23 23 N 1.31421 * 119.99928 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00322 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47007 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47265 * 120.00045 * 24 22 20 27 27 H 1.48504 * 109.47331 * 240.00537 * 24 22 20 28 28 H 1.09003 * 109.46745 * 269.97519 * 1 2 3 29 29 H 1.08994 * 109.46798 * 29.97256 * 1 2 3 30 30 H 1.08992 * 109.47273 * 149.97280 * 1 2 3 31 31 H 1.08995 * 109.47319 * 275.26021 * 10 9 7 32 32 H 1.09001 * 109.47336 * 35.25833 * 10 9 7 33 33 H 1.09006 * 109.47395 * 155.25576 * 10 9 7 34 34 H 1.09003 * 109.46906 * 30.00891 * 11 9 7 35 35 H 1.09004 * 109.47138 * 150.00433 * 11 9 7 36 36 H 1.09003 * 109.47030 * 300.00001 * 12 11 9 37 37 H 1.08995 * 109.47295 * 59.99476 * 12 11 9 38 38 H 1.09003 * 109.47053 * 300.00193 * 13 12 11 39 39 H 1.09004 * 109.46950 * 59.99710 * 13 12 11 40 40 H 1.08999 * 109.47638 * 59.99993 * 15 14 13 41 41 H 1.09000 * 109.46535 * 179.97438 * 15 14 13 42 42 H 1.09001 * 109.46972 * 299.99691 * 15 14 13 43 43 H 1.09003 * 109.47571 * 290.00551 * 16 14 13 44 44 H 1.09008 * 109.46921 * 50.00458 * 16 14 13 45 45 H 0.96992 * 119.99988 * 359.97438 * 19 17 16 46 46 H 0.96995 * 119.99803 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3228 1.0204 0.0000 4 8 3.4652 0.6264 -0.0005 5 7 3.6101 -0.5738 0.0049 6 6 2.4280 -1.1521 -0.0006 7 6 2.1033 -2.5988 -0.0009 8 8 0.9485 -2.9623 -0.1046 9 7 3.0890 -3.5107 0.1136 10 6 4.4665 -3.0740 0.3545 11 6 2.7831 -4.9387 -0.0027 12 6 2.4490 -5.5030 1.3796 13 6 2.1289 -6.9942 1.2580 14 7 1.8087 -7.5361 2.5854 15 6 0.5649 -6.9530 3.1059 16 6 1.7282 -9.0024 2.5499 17 6 1.6441 -9.5351 3.9571 18 8 1.6502 -8.7686 4.8970 19 7 1.5622 -10.8633 4.1711 20 6 1.4852 -11.3478 5.4513 21 1 1.4898 -10.6652 6.2883 22 6 1.4002 -12.7170 5.6720 23 7 1.3941 -13.5476 4.6535 24 14 1.2960 -13.3773 7.4162 25 1 1.3216 -12.2449 8.3766 26 1 0.0318 -14.1384 7.5828 27 1 2.4513 -14.2735 7.6762 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8897 -0.5142 31 1 4.9412 -2.8282 -0.5953 32 1 4.4614 -2.1933 0.9968 33 1 5.0219 -3.8756 0.8415 34 1 1.9294 -5.0744 -0.6667 35 1 3.6473 -5.4634 -0.4102 36 1 3.3028 -5.3672 2.0435 37 1 1.5849 -4.9784 1.7871 38 1 1.2750 -7.1296 0.5942 39 1 2.9929 -7.5192 0.8503 40 1 -0.2562 -7.1831 2.4271 41 1 0.3512 -7.3718 4.0893 42 1 0.6768 -5.8718 3.1875 43 1 0.8408 -9.3043 1.9935 44 1 2.6167 -9.4034 2.0621 45 1 1.5569 -11.4762 3.4194 46 1 1.3351 -14.5034 4.8076 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327298839.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:38 Heat of formation + Delta-G solvation = 61.322021 kcal Electronic energy + Delta-G solvation = -28704.744190 eV Core-core repulsion = 24442.786278 eV Total energy + Delta-G solvation = -4261.957912 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -47.33117 -40.40345 -38.64892 -37.02814 -36.15930 -35.60151 -35.11025 -33.87799 -32.17993 -31.21833 -29.93206 -28.04259 -27.47734 -27.16479 -25.53490 -24.59411 -23.10862 -22.79097 -20.83456 -20.44785 -19.51419 -19.12548 -18.29739 -17.82594 -17.60480 -16.75793 -15.99823 -15.96712 -15.47970 -15.02724 -14.76574 -14.62716 -14.44200 -14.14899 -14.02574 -13.84746 -13.70489 -13.52342 -13.37093 -13.28954 -12.98749 -12.44709 -12.33277 -12.13575 -12.03311 -11.99611 -11.63163 -11.56743 -11.45505 -11.24482 -11.19423 -10.91920 -10.81115 -10.75936 -10.56882 -10.33683 -10.21632 -9.47726 -9.21926 -8.43080 -7.96467 -7.82807 -6.40926 -3.81559 0.28269 0.85258 2.07964 2.44568 2.89138 2.96854 3.16704 3.27161 3.31415 3.34507 3.92014 4.00425 4.08877 4.24841 4.25939 4.61190 4.67695 4.76710 4.93144 4.98620 5.04522 5.10831 5.12575 5.14956 5.24547 5.27169 5.38221 5.42444 5.51878 5.60187 5.72396 5.76887 5.86132 5.98409 6.00287 6.07623 6.19137 6.30671 6.60943 6.68986 7.30303 7.40261 7.44067 7.56351 7.98005 8.07968 8.63249 9.19426 9.55917 10.07979 10.76964 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028665 B = 0.001667 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.565340 B =16797.263557 C =16967.234192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.062 3.938 3 N -0.357 5.357 4 O 0.339 5.661 5 N -0.318 5.318 6 C -0.040 4.040 7 C 0.602 3.398 8 O -0.508 6.508 9 N -0.595 5.595 10 C 0.073 3.927 11 C 0.118 3.882 12 C -0.131 4.131 13 C 0.058 3.942 14 N -0.519 5.519 15 C 0.022 3.978 16 C 0.046 3.954 17 C 0.445 3.555 18 O -0.577 6.577 19 N -0.566 5.566 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.033 0.967 39 H 0.073 0.927 40 H 0.014 0.986 41 H 0.094 0.906 42 H 0.060 0.940 43 H 0.047 0.953 44 H 0.087 0.913 45 H 0.392 0.608 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.032 23.459 -15.199 28.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.103 4.103 3 N -0.083 5.083 4 O 0.114 5.886 5 N -0.039 5.039 6 C -0.206 4.206 7 C 0.386 3.614 8 O -0.382 6.382 9 N -0.327 5.327 10 C -0.070 4.070 11 C -0.004 4.004 12 C -0.170 4.170 13 C -0.071 4.071 14 N -0.243 5.243 15 C -0.126 4.126 16 C -0.086 4.086 17 C 0.230 3.770 18 O -0.461 6.461 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.122 0.878 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.051 0.949 39 H 0.092 0.908 40 H 0.032 0.968 41 H 0.113 0.887 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.106 0.894 45 H 0.225 0.775 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.746 24.369 -14.289 28.497 hybrid contribution -1.152 -1.580 -0.192 1.965 sum 2.594 22.789 -14.481 27.125 Atomic orbital electron populations 1.20381 0.82817 1.05403 1.04936 1.26267 1.00438 0.85087 0.98543 1.75083 0.91127 1.23973 1.18073 1.85074 1.23350 1.16903 1.63250 1.75521 1.22856 0.92685 1.12872 1.26039 0.88138 0.98386 1.07994 1.16529 0.85350 0.81572 0.77918 1.90839 1.18702 1.79270 1.49346 1.47695 1.08384 1.06835 1.69815 1.22075 0.81114 1.01618 1.02147 1.21644 1.02575 0.77672 0.98513 1.21936 1.03147 0.95620 0.96329 1.22020 1.00171 0.94512 0.90373 1.61556 1.35535 1.04749 1.22426 1.22557 0.88500 0.99651 1.01912 1.21866 1.01370 0.88176 0.97152 1.19753 0.84245 0.83143 0.89862 1.90482 1.55156 1.56597 1.43901 1.41878 1.64293 1.05011 1.09057 1.19749 1.47041 0.91182 0.84719 0.87876 1.25261 0.97439 0.95863 0.99472 1.69624 1.50732 1.03535 1.30502 0.85805 0.77689 0.78854 0.82019 1.19237 1.20803 1.20765 0.88675 0.89330 0.87835 0.91720 0.90349 0.89785 0.89431 0.89523 0.90647 0.91060 0.94917 0.90809 0.96755 0.88714 0.92151 0.93480 0.89431 0.77508 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.26 36.01 0.37 -0.10 16 2 C 0.06 0.53 7.79 -79.33 -0.62 -0.09 16 3 N -0.36 -3.16 12.22 33.75 0.41 -2.75 16 4 O 0.34 2.87 11.65 27.27 0.32 3.19 16 5 N -0.32 -2.74 9.35 33.49 0.31 -2.43 16 6 C -0.04 -0.38 7.11 -80.07 -0.57 -0.95 16 7 C 0.60 6.31 7.68 -12.14 -0.09 6.22 16 8 O -0.51 -6.41 15.56 5.36 0.08 -6.32 16 9 N -0.59 -5.30 2.87 -182.54 -0.52 -5.82 16 10 C 0.07 0.49 9.41 59.85 0.56 1.06 16 11 C 0.12 1.01 5.34 -4.05 -0.02 0.99 16 12 C -0.13 -1.43 5.46 -26.73 -0.15 -1.58 16 13 C 0.06 0.71 4.96 -3.82 -0.02 0.69 16 14 N -0.52 -8.68 4.50 -244.36 -1.10 -9.78 16 15 C 0.02 0.36 8.96 60.07 0.54 0.90 16 16 C 0.05 0.82 5.45 -4.98 -0.03 0.79 16 17 C 0.44 10.53 7.47 -10.99 -0.08 10.45 16 18 O -0.58 -15.61 13.91 5.55 0.08 -15.54 16 19 N -0.57 -14.36 5.29 -10.96 -0.06 -14.42 16 20 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 21 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 22 C 0.02 0.56 5.50 -17.46 -0.10 0.47 16 23 N -0.90 -24.57 13.05 55.50 0.72 -23.84 16 24 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.10 0.68 7.24 -51.93 -0.38 0.31 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.57 5.99 -51.93 -0.31 0.26 16 33 H 0.08 0.47 8.03 -51.93 -0.42 0.05 16 34 H 0.09 0.80 7.50 -51.93 -0.39 0.41 16 35 H 0.09 0.56 8.07 -51.93 -0.42 0.14 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.90 6.55 -51.93 -0.34 0.56 16 38 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 39 H 0.07 0.80 7.93 -51.93 -0.41 0.39 16 40 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.09 1.93 5.82 -51.93 -0.30 1.63 16 42 H 0.06 0.93 6.47 -51.93 -0.34 0.59 16 43 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 44 H 0.09 1.40 7.93 -51.92 -0.41 0.98 16 45 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 46 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 386.20 15.07 5.82 5.82 Total: -1.00 -32.77 386.20 -5.81 -38.58 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -6.51 Total: 6.84 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: -0.35 Total: 10.41 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: -0.23 Total: -59.04 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: 0.48 Total: -18.67 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.77 -5.81 -38.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327298839.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.905 kcal (2) G-P(sol) polarization free energy of solvation -32.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds