Wall clock time and date at job start Tue Mar 31 2020 22:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30636 * 128.64128 * 2 1 4 4 O 1.20840 * 109.61644 * 180.02562 * 3 2 1 5 5 N 1.20901 * 115.90663 * 359.69596 * 4 3 2 6 6 C 1.31599 * 109.18458 * 0.49290 * 5 4 3 7 7 C 1.48268 * 128.71788 * 179.82240 * 6 5 4 8 8 O 1.21504 * 120.00154 * 185.35186 * 7 6 5 9 9 N 1.34774 * 120.00074 * 5.34114 * 7 6 5 10 10 C 1.46500 * 119.99902 * 5.29045 * 9 7 6 11 11 C 1.46496 * 120.00459 * 185.28292 * 9 7 6 12 12 C 1.52996 * 109.47649 * 270.00813 * 11 9 7 13 13 C 1.52998 * 109.47690 * 179.97438 * 12 11 9 14 14 N 1.46901 * 109.47293 * 179.97438 * 13 12 11 15 15 C 1.46901 * 110.99602 * 66.04961 * 14 13 12 16 16 C 1.46899 * 110.99910 * 189.99722 * 14 13 12 17 17 C 1.50699 * 109.47145 * 169.99933 * 16 14 13 18 18 O 1.21286 * 119.99973 * 0.02562 * 17 16 14 19 19 N 1.34778 * 119.99804 * 180.02562 * 17 16 14 20 20 C 1.37101 * 119.99570 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00151 * 0.02562 * 20 19 17 22 22 C 1.38946 * 119.99946 * 179.97438 * 20 19 17 23 23 N 1.31421 * 119.99928 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00322 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47007 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47265 * 120.00045 * 24 22 20 27 27 H 1.48504 * 109.47331 * 240.00537 * 24 22 20 28 28 H 1.09003 * 109.46745 * 269.97519 * 1 2 3 29 29 H 1.08994 * 109.46798 * 29.97256 * 1 2 3 30 30 H 1.08992 * 109.47273 * 149.97280 * 1 2 3 31 31 H 1.08995 * 109.47319 * 275.26021 * 10 9 7 32 32 H 1.09001 * 109.47336 * 35.25833 * 10 9 7 33 33 H 1.09006 * 109.47395 * 155.25576 * 10 9 7 34 34 H 1.09003 * 109.46906 * 30.00891 * 11 9 7 35 35 H 1.09004 * 109.47138 * 150.00433 * 11 9 7 36 36 H 1.09003 * 109.47030 * 300.00001 * 12 11 9 37 37 H 1.08995 * 109.47295 * 59.99476 * 12 11 9 38 38 H 1.09003 * 109.47053 * 300.00193 * 13 12 11 39 39 H 1.09004 * 109.46950 * 59.99710 * 13 12 11 40 40 H 1.08999 * 109.47638 * 59.99993 * 15 14 13 41 41 H 1.09000 * 109.46535 * 179.97438 * 15 14 13 42 42 H 1.09001 * 109.46972 * 299.99691 * 15 14 13 43 43 H 1.09003 * 109.47571 * 290.00551 * 16 14 13 44 44 H 1.09008 * 109.46921 * 50.00458 * 16 14 13 45 45 H 0.96992 * 119.99988 * 359.97438 * 19 17 16 46 46 H 0.96995 * 119.99803 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3228 1.0204 0.0000 4 8 3.4652 0.6264 -0.0005 5 7 3.6101 -0.5738 0.0049 6 6 2.4280 -1.1521 -0.0006 7 6 2.1033 -2.5988 -0.0009 8 8 0.9485 -2.9623 -0.1046 9 7 3.0890 -3.5107 0.1136 10 6 4.4665 -3.0740 0.3545 11 6 2.7831 -4.9387 -0.0027 12 6 2.4490 -5.5030 1.3796 13 6 2.1289 -6.9942 1.2580 14 7 1.8087 -7.5361 2.5854 15 6 0.5649 -6.9530 3.1059 16 6 1.7282 -9.0024 2.5499 17 6 1.6441 -9.5351 3.9571 18 8 1.6502 -8.7686 4.8970 19 7 1.5622 -10.8633 4.1711 20 6 1.4852 -11.3478 5.4513 21 1 1.4898 -10.6652 6.2883 22 6 1.4002 -12.7170 5.6720 23 7 1.3941 -13.5476 4.6535 24 14 1.2960 -13.3773 7.4162 25 1 1.3216 -12.2449 8.3766 26 1 0.0318 -14.1384 7.5828 27 1 2.4513 -14.2735 7.6762 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8897 -0.5142 31 1 4.9412 -2.8282 -0.5953 32 1 4.4614 -2.1933 0.9968 33 1 5.0219 -3.8756 0.8415 34 1 1.9294 -5.0744 -0.6667 35 1 3.6473 -5.4634 -0.4102 36 1 3.3028 -5.3672 2.0435 37 1 1.5849 -4.9784 1.7871 38 1 1.2750 -7.1296 0.5942 39 1 2.9929 -7.5192 0.8503 40 1 -0.2562 -7.1831 2.4271 41 1 0.3512 -7.3718 4.0893 42 1 0.6768 -5.8718 3.1875 43 1 0.8408 -9.3043 1.9935 44 1 2.6167 -9.4034 2.0621 45 1 1.5569 -11.4762 3.4194 46 1 1.3351 -14.5034 4.8076 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327298839.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:37 Heat of formation + Delta-G solvation = 37.725825 kcal Electronic energy + Delta-G solvation = -28705.767398 eV Core-core repulsion = 24442.786278 eV Total energy + Delta-G solvation = -4262.981120 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.00372 -41.17012 -40.36145 -38.28122 -37.08149 -36.26678 -35.95109 -35.74882 -33.32131 -33.06951 -30.50735 -29.45734 -28.31519 -27.96033 -26.93887 -25.93651 -24.15625 -23.51078 -21.91395 -21.20610 -20.92081 -20.19015 -19.84163 -18.99028 -18.29990 -17.89062 -17.35423 -16.83795 -16.62706 -16.55292 -16.26119 -15.84540 -15.42612 -15.27223 -15.15096 -14.93390 -14.60486 -14.50958 -14.39963 -14.16106 -13.77389 -13.63675 -13.49842 -13.19401 -13.01972 -12.98822 -12.96171 -12.74530 -12.60649 -12.52406 -12.38890 -12.29001 -12.22683 -12.11061 -11.62470 -11.47797 -11.44569 -11.42011 -10.28424 -9.98790 -9.92152 -9.19775 -8.45832 -5.94179 -0.42683 0.19433 1.36690 1.38333 1.41883 1.55917 1.68579 2.07012 2.21971 2.29098 2.33275 2.64811 2.82303 3.21087 3.42255 3.43736 3.58790 3.92955 4.02964 4.08003 4.13734 4.19794 4.36447 4.38546 4.44718 4.54018 4.55083 4.56805 4.60652 4.62429 4.67164 4.73087 4.79456 4.88138 5.01683 5.05067 5.14720 5.22956 5.39121 5.42472 5.90017 5.98445 6.07912 6.23705 6.62361 6.67296 7.14544 7.30556 7.58257 8.14555 8.71793 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028665 B = 0.001667 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.565340 B =16797.263557 C =16967.234192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.062 3.938 3 N -0.364 5.364 4 O 0.342 5.658 5 N -0.312 5.312 6 C -0.054 4.054 7 C 0.598 3.402 8 O -0.536 6.536 9 N -0.593 5.593 10 C 0.071 3.929 11 C 0.123 3.877 12 C -0.121 4.121 13 C 0.060 3.940 14 N -0.539 5.539 15 C 0.030 3.970 16 C 0.058 3.942 17 C 0.441 3.559 18 O -0.616 6.616 19 N -0.575 5.575 20 C -0.331 4.331 21 H 0.078 0.922 22 C -0.014 4.014 23 N -0.920 5.920 24 Si 0.992 3.008 25 H -0.274 1.274 26 H -0.271 1.271 27 H -0.270 1.270 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.117 0.883 36 H 0.069 0.931 37 H 0.048 0.952 38 H 0.043 0.957 39 H 0.097 0.903 40 H 0.026 0.974 41 H 0.053 0.947 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.115 0.885 45 H 0.396 0.604 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.761 23.474 -16.465 28.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.104 4.104 3 N -0.091 5.091 4 O 0.117 5.883 5 N -0.032 5.032 6 C -0.219 4.219 7 C 0.382 3.618 8 O -0.412 6.412 9 N -0.324 5.324 10 C -0.071 4.071 11 C 0.001 3.999 12 C -0.160 4.160 13 C -0.068 4.068 14 N -0.263 5.263 15 C -0.118 4.118 16 C -0.073 4.073 17 C 0.228 3.772 18 O -0.502 6.502 19 N -0.213 5.213 20 C -0.461 4.461 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.816 3.184 25 H -0.199 1.199 26 H -0.197 1.197 27 H -0.196 1.196 28 H 0.122 0.878 29 H 0.125 0.875 30 H 0.116 0.884 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.101 0.899 35 H 0.135 0.865 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.115 0.885 40 H 0.045 0.955 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.133 0.867 45 H 0.230 0.770 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.504 24.374 -15.590 29.282 hybrid contribution -1.348 -1.512 0.184 2.034 sum 3.156 22.863 -15.406 27.749 Atomic orbital electron populations 1.20490 0.81344 1.05984 1.05645 1.26653 1.01382 0.84644 0.97711 1.75087 0.91199 1.24115 1.18691 1.85064 1.23370 1.16809 1.63070 1.75510 1.22599 0.92707 1.12401 1.26006 0.88661 0.98255 1.08962 1.16704 0.85281 0.82098 0.77668 1.90818 1.19768 1.79769 1.50856 1.47814 1.08919 1.06821 1.68872 1.22208 0.80072 1.01941 1.02833 1.21645 1.03793 0.77614 0.96881 1.21815 1.01901 0.94715 0.97599 1.22122 1.01443 0.95124 0.88091 1.61516 1.35310 1.04007 1.25460 1.22376 0.89391 1.00023 1.00057 1.21754 1.03481 0.89073 0.93024 1.20835 0.82019 0.82264 0.92076 1.90462 1.56267 1.57397 1.46087 1.41942 1.65056 1.05886 1.08395 1.19679 1.49393 0.91631 0.85356 0.90439 1.26021 0.96440 0.95526 1.03347 1.69679 1.50451 1.03986 1.32047 0.84882 0.78305 0.77969 0.77238 1.19917 1.19662 1.19558 0.87805 0.87497 0.88424 0.90523 0.91023 0.88242 0.89858 0.86501 0.91232 0.93276 0.93841 0.88519 0.95525 0.92775 0.91083 0.91599 0.86713 0.76992 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 10.26 71.24 0.73 -0.14 16 2 C 0.06 1.01 7.79 45.18 0.35 1.36 16 3 N -0.36 -6.15 12.22 -51.84 -0.63 -6.78 16 4 O 0.34 5.52 11.65 140.85 1.64 7.16 16 5 N -0.31 -5.10 9.35 -52.05 -0.49 -5.58 16 6 C -0.05 -0.98 7.11 44.29 0.31 -0.67 16 7 C 0.60 12.10 7.68 86.91 0.67 12.77 16 8 O -0.54 -13.37 15.56 -3.73 -0.06 -13.43 16 9 N -0.59 -9.59 2.87 -849.72 -2.44 -12.04 16 10 C 0.07 0.82 9.41 127.77 1.20 2.02 16 11 C 0.12 1.81 5.34 86.38 0.46 2.27 16 12 C -0.12 -2.43 5.46 30.59 0.17 -2.26 16 13 C 0.06 1.31 4.96 86.30 0.43 1.74 16 14 N -0.54 -17.30 4.50 -927.03 -4.17 -21.47 16 15 C 0.03 1.00 8.96 127.69 1.14 2.14 16 16 C 0.06 1.98 5.45 85.56 0.47 2.45 16 17 C 0.44 21.08 7.47 87.66 0.66 21.73 16 18 O -0.62 -34.34 13.91 -3.05 -0.04 -34.38 16 19 N -0.58 -29.60 5.29 -306.99 -1.62 -31.22 16 20 C -0.33 -18.89 9.68 84.04 0.81 -18.08 16 21 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 22 C -0.01 -0.74 5.50 84.92 0.47 -0.27 16 23 N -0.92 -49.65 13.05 21.66 0.28 -49.37 16 24 Si 0.99 43.14 29.55 68.60 2.03 45.17 16 25 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 28 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.10 1.25 7.24 -2.39 -0.02 1.24 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.94 5.99 -2.39 -0.01 0.93 16 33 H 0.10 0.85 8.03 -2.38 -0.02 0.83 16 34 H 0.08 1.36 7.50 -2.39 -0.02 1.34 16 35 H 0.12 1.05 8.07 -2.38 -0.02 1.04 16 36 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.05 1.21 6.55 -2.39 -0.02 1.19 16 38 H 0.04 0.89 8.12 -2.39 -0.02 0.87 16 39 H 0.10 1.70 7.93 -2.38 -0.02 1.68 16 40 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.05 2.27 5.82 -2.39 -0.01 2.26 16 42 H 0.07 2.19 6.47 -2.39 -0.02 2.17 16 43 H 0.07 2.04 8.12 -2.39 -0.02 2.02 16 44 H 0.11 3.33 7.93 -2.38 -0.02 3.31 16 45 H 0.40 19.27 7.90 -92.71 -0.73 18.54 16 46 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -72.05 386.20 2.66 -69.40 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 0.29 Total: 27.49 kcal Atomic # 6 Polarization: 17.19 SS G_CDS: 7.87 Total: 25.06 kcal Atomic # 7 Polarization: -117.39 SS G_CDS: -9.07 Total: -126.46 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: 1.54 Total: -40.65 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -72.05 2.66 -69.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327298839.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.122 kcal (2) G-P(sol) polarization free energy of solvation -72.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds