Wall clock time and date at job start Tue Mar 31 2020 22:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29944 * 125.30425 * 2 1 4 4 O 1.41878 * 107.41495 * 180.02562 * 3 2 1 5 5 N 1.41877 * 106.38706 * 359.78266 * 4 3 2 6 6 C 1.29954 * 107.41151 * 0.36886 * 5 4 3 7 7 C 1.50701 * 125.30106 * 179.89446 * 6 5 4 8 8 C 1.50706 * 109.46790 * 269.68929 * 7 6 5 9 9 O 1.21280 * 120.00021 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99859 * 180.02562 * 8 7 6 11 11 C 1.46494 * 120.00302 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47646 * 175.01985 * 11 10 8 13 13 H 1.09003 * 109.47430 * 174.78066 * 12 11 10 14 14 C 1.52998 * 109.47095 * 294.78135 * 12 11 10 15 15 N 1.46899 * 109.47038 * 54.77782 * 12 11 10 16 16 C 1.46904 * 110.99784 * 55.39262 * 15 12 11 17 17 C 1.46897 * 111.00010 * 179.34175 * 15 12 11 18 18 C 1.50707 * 109.46967 * 169.99954 * 17 15 12 19 19 O 1.21286 * 119.99830 * 0.02562 * 18 17 15 20 20 N 1.34777 * 119.99742 * 179.72461 * 18 17 15 21 21 C 1.37093 * 120.00017 * 179.97438 * 20 18 17 22 22 H 1.08010 * 119.99915 * 0.02562 * 21 20 18 23 23 C 1.38947 * 120.00598 * 179.97438 * 21 20 18 24 24 N 1.31412 * 119.99481 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00546 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46873 * 90.00370 * 25 23 21 27 27 H 1.48501 * 109.47288 * 210.00369 * 25 23 21 28 28 H 1.48497 * 109.46959 * 330.00237 * 25 23 21 29 29 H 1.09004 * 109.47026 * 269.99258 * 1 2 3 30 30 H 1.08997 * 109.47504 * 29.99677 * 1 2 3 31 31 H 1.09003 * 109.47056 * 150.00094 * 1 2 3 32 32 H 1.09002 * 109.47025 * 149.69273 * 7 6 5 33 33 H 1.08996 * 109.47600 * 29.68573 * 7 6 5 34 34 H 0.97008 * 119.99878 * 359.97438 * 10 8 7 35 35 H 1.09008 * 109.47199 * 55.02199 * 11 10 8 36 36 H 1.08998 * 109.47214 * 295.02359 * 11 10 8 37 37 H 1.09001 * 109.47527 * 299.99784 * 14 12 11 38 38 H 1.09001 * 109.47241 * 59.99197 * 14 12 11 39 39 H 1.09001 * 109.47488 * 179.97438 * 14 12 11 40 40 H 1.09000 * 109.47155 * 177.40908 * 16 15 12 41 41 H 1.09007 * 109.46813 * 297.40627 * 16 15 12 42 42 H 1.08994 * 109.47034 * 57.40729 * 16 15 12 43 43 H 1.09005 * 109.46828 * 50.00363 * 17 15 12 44 44 H 1.09000 * 109.47371 * 290.00239 * 17 15 12 45 45 H 0.96996 * 120.00035 * 0.02562 * 20 18 17 46 46 H 0.97004 * 120.00400 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6082 0.6246 -0.0006 5 7 3.5710 -0.7936 0.0042 6 6 2.3212 -1.1499 -0.0007 7 6 1.8209 -2.5714 -0.0004 8 6 1.6531 -3.0451 -1.4212 9 8 1.9146 -2.3018 -2.3431 10 7 1.2125 -4.2948 -1.6673 11 6 1.0499 -4.7555 -3.0483 12 6 0.6610 -6.2353 -3.0500 13 1 0.4498 -6.5544 -4.0706 14 6 1.8143 -7.0664 -2.4842 15 7 -0.5350 -6.4282 -2.2192 16 6 -1.6329 -5.5612 -2.6677 17 6 -0.9478 -7.8379 -2.2098 18 6 -2.0151 -8.0419 -1.1656 19 8 -2.3949 -7.1050 -0.4955 20 7 -2.5519 -9.2643 -0.9805 21 6 -3.5224 -9.4500 -0.0303 22 1 -3.8572 -8.6166 0.5698 23 6 -4.0763 -10.7100 0.1603 24 7 -3.6694 -11.7238 -0.5702 25 14 -5.3993 -10.9629 1.4546 26 1 -6.7356 -10.7404 0.8464 27 1 -5.3191 -12.3495 1.9800 28 1 -5.1947 -9.9997 2.5662 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 0.8611 -2.6186 0.5141 33 1 2.5401 -3.2097 0.5128 34 1 1.0037 -4.8895 -0.9298 35 1 1.9884 -4.6260 -3.5875 36 1 0.2676 -4.1737 -3.5357 37 1 2.7019 -6.9233 -3.1006 38 1 2.0256 -6.7472 -1.4636 39 1 1.5371 -8.1205 -2.4849 40 1 -2.5199 -5.7571 -2.0652 41 1 -1.3405 -4.5171 -2.5551 42 1 -1.8528 -5.7661 -3.7154 43 1 -0.0880 -8.4667 -1.9782 44 1 -1.3418 -8.1077 -3.1896 45 1 -2.2510 -10.0127 -1.5191 46 1 -4.0557 -12.6035 -0.4370 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329587468.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:07 Heat of formation + Delta-G solvation = 27.854559 kcal Electronic energy + Delta-G solvation = -29316.594478 eV Core-core repulsion = 25053.185308 eV Total energy + Delta-G solvation = -4263.409170 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.80567 -40.04553 -38.88234 -37.35904 -34.86529 -34.50096 -33.86141 -33.67784 -31.40233 -31.30196 -29.87886 -29.03615 -28.43202 -26.13605 -24.98353 -23.81529 -22.94470 -21.50826 -20.50924 -20.09487 -19.17676 -17.94842 -17.63970 -17.25210 -16.72533 -16.16578 -15.83322 -15.80424 -15.46043 -14.82409 -14.80171 -14.57556 -14.35387 -14.17073 -13.92150 -13.80793 -13.73863 -13.47743 -13.35408 -13.18018 -12.85978 -12.42761 -12.31780 -12.03162 -11.99960 -11.90419 -11.72305 -11.54972 -11.44007 -11.29098 -11.20572 -11.00544 -10.88883 -10.72195 -10.45284 -10.28765 -10.16970 -9.54830 -9.22163 -8.56697 -8.08227 -7.99119 -6.48818 -3.89895 0.27458 1.63153 2.32391 2.35737 2.79506 3.04739 3.12011 3.21596 3.26451 3.55650 3.80721 3.83790 4.16182 4.19724 4.50750 4.52184 4.60957 4.77677 4.80104 4.88915 4.99224 5.02341 5.06798 5.13571 5.19473 5.30628 5.39138 5.47429 5.52497 5.56349 5.63496 5.67699 5.79125 5.88140 5.89998 6.11312 6.19599 6.23736 6.43229 6.65421 7.10456 7.22316 7.31817 7.48086 7.96045 7.98604 8.53604 9.10705 9.46755 9.97732 10.68720 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016355 B = 0.002171 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.551942 B =12895.497286 C =13919.282909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.089 3.911 3 N -0.280 5.280 4 O 0.025 5.975 5 N -0.264 5.264 6 C 0.100 3.900 7 C -0.083 4.083 8 C 0.518 3.482 9 O -0.542 6.542 10 N -0.705 5.705 11 C 0.130 3.870 12 C 0.063 3.937 13 H 0.056 0.944 14 C -0.149 4.149 15 N -0.514 5.514 16 C 0.019 3.981 17 C 0.041 3.959 18 C 0.444 3.556 19 O -0.579 6.579 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.133 0.867 33 H 0.126 0.874 34 H 0.416 0.584 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.097 0.903 41 H 0.062 0.938 42 H 0.015 0.985 43 H 0.093 0.907 44 H 0.048 0.952 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.070 12.863 -2.419 15.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.094 4.094 3 N -0.026 5.026 4 O -0.116 6.116 5 N -0.007 5.007 6 C -0.084 4.084 7 C -0.124 4.124 8 C 0.301 3.699 9 O -0.419 6.419 10 N -0.359 5.359 11 C 0.006 3.994 12 C -0.046 4.046 13 H 0.073 0.927 14 C -0.206 4.206 15 N -0.239 5.239 16 C -0.129 4.129 17 C -0.090 4.090 18 C 0.229 3.771 19 O -0.464 6.464 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.117 0.883 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.151 0.849 33 H 0.144 0.856 34 H 0.254 0.746 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.115 0.885 41 H 0.081 0.919 42 H 0.033 0.967 43 H 0.111 0.889 44 H 0.066 0.934 45 H 0.225 0.775 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.259 14.778 -2.143 18.116 hybrid contribution -1.347 -1.770 -0.308 2.246 sum 8.911 13.008 -2.451 15.957 Atomic orbital electron populations 1.20609 0.84090 1.05667 1.04879 1.24537 1.00374 0.88790 0.95680 1.79911 0.89045 1.19590 1.14055 1.93383 1.20267 1.13313 1.84639 1.79899 1.17407 0.91416 1.11950 1.23778 0.89998 0.97758 0.96870 1.20370 1.05545 0.89049 0.97467 1.19998 0.77568 0.82307 0.89981 1.90765 1.50468 1.54777 1.45920 1.45803 1.66227 1.13862 1.09960 1.21427 1.01460 0.93597 0.82955 1.21980 0.92128 0.94301 0.96196 0.92651 1.21921 0.96705 1.00192 1.01825 1.61646 1.04748 1.05707 1.51758 1.22586 0.95896 0.96576 0.97837 1.21953 0.99138 0.89679 0.98259 1.19693 0.85906 0.84107 0.87388 1.90473 1.64565 1.40911 1.50404 1.41875 1.35214 1.08427 1.34455 1.19675 1.13959 0.95708 1.13538 0.87902 1.25266 0.99019 0.95098 0.98545 1.69607 1.43412 1.00978 1.40205 0.85866 0.80422 0.77583 0.80473 1.20432 1.20924 1.19397 0.88263 0.89026 0.88686 0.84912 0.85556 0.74635 0.90792 0.91309 0.92130 0.91627 0.91735 0.88485 0.91927 0.96680 0.88930 0.93435 0.77523 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.57 10.05 36.01 0.36 -0.21 16 2 C 0.09 0.89 7.19 -82.39 -0.59 0.30 16 3 N -0.28 -3.51 12.98 33.74 0.44 -3.08 16 4 O 0.02 0.35 13.71 12.02 0.16 0.52 16 5 N -0.26 -3.43 12.98 33.74 0.44 -3.00 16 6 C 0.10 1.04 5.68 -82.38 -0.47 0.57 16 7 C -0.08 -0.61 5.87 -29.03 -0.17 -0.78 16 8 C 0.52 5.27 7.82 -10.98 -0.09 5.19 16 9 O -0.54 -7.70 16.03 5.56 0.09 -7.61 16 10 N -0.71 -6.54 5.05 -60.29 -0.30 -6.85 16 11 C 0.13 1.26 4.59 -4.04 -0.02 1.24 16 12 C 0.06 0.63 2.34 -67.71 -0.16 0.47 16 13 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 14 C -0.15 -1.34 8.88 37.16 0.33 -1.01 16 15 N -0.51 -6.73 3.73 -236.32 -0.88 -7.62 16 16 C 0.02 0.26 8.66 60.07 0.52 0.78 16 17 C 0.04 0.62 5.27 -4.97 -0.03 0.60 16 18 C 0.44 9.36 7.45 -10.98 -0.08 9.27 16 19 O -0.58 -13.86 13.93 5.55 0.08 -13.78 16 20 N -0.56 -13.22 5.29 -10.96 -0.06 -13.28 16 21 C -0.30 -7.85 9.68 -14.94 -0.14 -7.99 16 22 H 0.10 2.83 7.16 -52.48 -0.38 2.45 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -23.48 13.05 55.50 0.72 -22.75 16 25 Si 0.93 20.11 29.55 -169.99 -5.02 15.08 16 26 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 27 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 28 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.50 7.77 -51.93 -0.40 0.10 16 32 H 0.13 0.57 7.78 -51.93 -0.40 0.16 16 33 H 0.13 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.42 3.69 7.42 -40.82 -0.30 3.38 16 35 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 36 H 0.07 0.72 6.71 -51.93 -0.35 0.37 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.60 7.31 -51.93 -0.38 0.22 16 39 H 0.06 0.61 6.21 -51.93 -0.32 0.29 16 40 H 0.10 1.67 5.80 -51.93 -0.30 1.37 16 41 H 0.06 0.76 6.48 -51.92 -0.34 0.42 16 42 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 43 H 0.09 1.27 5.85 -51.93 -0.30 0.96 16 44 H 0.05 0.69 8.12 -51.93 -0.42 0.26 16 45 H 0.39 8.86 7.90 -40.82 -0.32 8.54 16 46 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 386.41 15.07 5.82 5.82 Total: -1.00 -33.32 386.41 -5.46 -38.78 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -6.32 Total: 8.85 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: -0.63 Total: 8.90 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: 0.36 Total: -56.57 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: 0.33 Total: -20.87 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.32 -5.46 -38.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329587468.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.635 kcal (2) G-P(sol) polarization free energy of solvation -33.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds