Wall clock time and date at job start Tue Mar 31 2020 22:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29944 * 125.30425 * 2 1 4 4 O 1.41878 * 107.41495 * 180.02562 * 3 2 1 5 5 N 1.41877 * 106.38706 * 359.78266 * 4 3 2 6 6 C 1.29954 * 107.41151 * 0.36886 * 5 4 3 7 7 C 1.50701 * 125.30106 * 179.89446 * 6 5 4 8 8 C 1.50706 * 109.46790 * 269.68929 * 7 6 5 9 9 O 1.21280 * 120.00021 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99859 * 180.02562 * 8 7 6 11 11 C 1.46494 * 120.00302 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47646 * 175.01985 * 11 10 8 13 13 H 1.09003 * 109.47430 * 174.78066 * 12 11 10 14 14 C 1.52998 * 109.47095 * 294.78135 * 12 11 10 15 15 N 1.46899 * 109.47038 * 54.77782 * 12 11 10 16 16 C 1.46904 * 110.99784 * 55.39262 * 15 12 11 17 17 C 1.46897 * 111.00010 * 179.34175 * 15 12 11 18 18 C 1.50707 * 109.46967 * 169.99954 * 17 15 12 19 19 O 1.21286 * 119.99830 * 0.02562 * 18 17 15 20 20 N 1.34777 * 119.99742 * 179.72461 * 18 17 15 21 21 C 1.37093 * 120.00017 * 179.97438 * 20 18 17 22 22 H 1.08010 * 119.99915 * 0.02562 * 21 20 18 23 23 C 1.38947 * 120.00598 * 179.97438 * 21 20 18 24 24 N 1.31412 * 119.99481 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00546 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46873 * 90.00370 * 25 23 21 27 27 H 1.48501 * 109.47288 * 210.00369 * 25 23 21 28 28 H 1.48497 * 109.46959 * 330.00237 * 25 23 21 29 29 H 1.09004 * 109.47026 * 269.99258 * 1 2 3 30 30 H 1.08997 * 109.47504 * 29.99677 * 1 2 3 31 31 H 1.09003 * 109.47056 * 150.00094 * 1 2 3 32 32 H 1.09002 * 109.47025 * 149.69273 * 7 6 5 33 33 H 1.08996 * 109.47600 * 29.68573 * 7 6 5 34 34 H 0.97008 * 119.99878 * 359.97438 * 10 8 7 35 35 H 1.09008 * 109.47199 * 55.02199 * 11 10 8 36 36 H 1.08998 * 109.47214 * 295.02359 * 11 10 8 37 37 H 1.09001 * 109.47527 * 299.99784 * 14 12 11 38 38 H 1.09001 * 109.47241 * 59.99197 * 14 12 11 39 39 H 1.09001 * 109.47488 * 179.97438 * 14 12 11 40 40 H 1.09000 * 109.47155 * 177.40908 * 16 15 12 41 41 H 1.09007 * 109.46813 * 297.40627 * 16 15 12 42 42 H 1.08994 * 109.47034 * 57.40729 * 16 15 12 43 43 H 1.09005 * 109.46828 * 50.00363 * 17 15 12 44 44 H 1.09000 * 109.47371 * 290.00239 * 17 15 12 45 45 H 0.96996 * 120.00035 * 0.02562 * 20 18 17 46 46 H 0.97004 * 120.00400 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6082 0.6246 -0.0006 5 7 3.5710 -0.7936 0.0042 6 6 2.3212 -1.1499 -0.0007 7 6 1.8209 -2.5714 -0.0004 8 6 1.6531 -3.0451 -1.4212 9 8 1.9146 -2.3018 -2.3431 10 7 1.2125 -4.2948 -1.6673 11 6 1.0499 -4.7555 -3.0483 12 6 0.6610 -6.2353 -3.0500 13 1 0.4498 -6.5544 -4.0706 14 6 1.8143 -7.0664 -2.4842 15 7 -0.5350 -6.4282 -2.2192 16 6 -1.6329 -5.5612 -2.6677 17 6 -0.9478 -7.8379 -2.2098 18 6 -2.0151 -8.0419 -1.1656 19 8 -2.3949 -7.1050 -0.4955 20 7 -2.5519 -9.2643 -0.9805 21 6 -3.5224 -9.4500 -0.0303 22 1 -3.8572 -8.6166 0.5698 23 6 -4.0763 -10.7100 0.1603 24 7 -3.6694 -11.7238 -0.5702 25 14 -5.3993 -10.9629 1.4546 26 1 -6.7356 -10.7404 0.8464 27 1 -5.3191 -12.3495 1.9800 28 1 -5.1947 -9.9997 2.5662 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 0.8611 -2.6186 0.5141 33 1 2.5401 -3.2097 0.5128 34 1 1.0037 -4.8895 -0.9298 35 1 1.9884 -4.6260 -3.5875 36 1 0.2676 -4.1737 -3.5357 37 1 2.7019 -6.9233 -3.1006 38 1 2.0256 -6.7472 -1.4636 39 1 1.5371 -8.1205 -2.4849 40 1 -2.5199 -5.7571 -2.0652 41 1 -1.3405 -4.5171 -2.5551 42 1 -1.8528 -5.7661 -3.7154 43 1 -0.0880 -8.4667 -1.9782 44 1 -1.3418 -8.1077 -3.1896 45 1 -2.2510 -10.0127 -1.5191 46 1 -4.0557 -12.6035 -0.4370 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329587468.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:06 Heat of formation + Delta-G solvation = 1.363705 kcal Electronic energy + Delta-G solvation = -29317.743208 eV Core-core repulsion = 25053.185308 eV Total energy + Delta-G solvation = -4264.557900 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.63155 -40.94943 -40.24697 -38.62761 -35.96487 -35.64852 -35.21247 -34.48523 -33.19918 -32.27945 -30.65916 -29.75072 -29.55339 -27.29044 -26.32059 -25.09425 -23.77675 -22.29745 -21.31197 -21.22404 -20.58870 -19.75902 -18.49151 -18.06172 -17.87169 -17.14976 -16.92257 -16.67608 -16.49207 -16.44616 -16.02339 -15.57621 -15.38953 -15.24507 -15.12639 -14.91723 -14.57374 -14.44964 -14.25600 -13.89167 -13.75192 -13.57520 -13.36447 -13.13543 -13.05782 -12.89558 -12.88187 -12.68704 -12.61512 -12.37241 -12.27223 -12.22718 -12.11824 -12.09275 -11.67798 -11.65019 -11.38366 -11.03006 -10.17927 -10.03592 -9.92499 -9.19384 -8.40899 -5.88280 -0.57544 0.86496 1.41504 1.45809 1.47843 1.55253 1.57366 2.00696 2.14513 2.26272 2.32929 2.77131 2.83032 3.27077 3.47844 3.50596 3.74931 3.87299 3.90394 4.05076 4.15890 4.26322 4.36805 4.38557 4.46602 4.51089 4.58702 4.61473 4.65032 4.70038 4.70429 4.75386 4.83861 4.98744 5.06899 5.07851 5.27374 5.40533 5.44482 5.47465 5.80935 5.92233 6.11889 6.23751 6.55109 6.67529 7.19762 7.20252 7.65557 8.20604 8.76437 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016355 B = 0.002171 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.551942 B =12895.497286 C =13919.282909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.098 3.902 3 N -0.307 5.307 4 O -0.016 6.016 5 N -0.291 5.291 6 C 0.108 3.892 7 C -0.080 4.080 8 C 0.521 3.479 9 O -0.585 6.585 10 N -0.697 5.697 11 C 0.132 3.868 12 C 0.070 3.930 13 H 0.067 0.933 14 C -0.148 4.148 15 N -0.519 5.519 16 C 0.026 3.974 17 C 0.053 3.947 18 C 0.446 3.554 19 O -0.608 6.608 20 N -0.579 5.579 21 C -0.325 4.325 22 H 0.081 0.919 23 C -0.016 4.016 24 N -0.923 5.923 25 Si 0.988 3.012 26 H -0.274 1.274 27 H -0.275 1.275 28 H -0.271 1.271 29 H 0.128 0.872 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.171 0.829 33 H 0.149 0.851 34 H 0.421 0.579 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.078 0.922 42 H 0.025 0.975 43 H 0.115 0.885 44 H 0.062 0.938 45 H 0.394 0.606 46 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.722 12.148 -2.339 15.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 N -0.056 5.056 4 O -0.150 6.150 5 N -0.037 5.037 6 C -0.077 4.077 7 C -0.120 4.120 8 C 0.306 3.694 9 O -0.466 6.466 10 N -0.350 5.350 11 C 0.008 3.992 12 C -0.039 4.039 13 H 0.085 0.915 14 C -0.205 4.205 15 N -0.244 5.244 16 C -0.122 4.122 17 C -0.078 4.078 18 C 0.233 3.767 19 O -0.493 6.493 20 N -0.216 5.216 21 C -0.454 4.454 22 H 0.099 0.901 23 C -0.215 4.215 24 N -0.564 5.564 25 Si 0.813 3.187 26 H -0.200 1.200 27 H -0.200 1.200 28 H -0.195 1.195 29 H 0.146 0.854 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.189 0.811 33 H 0.167 0.833 34 H 0.259 0.741 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.096 0.904 42 H 0.043 0.957 43 H 0.133 0.867 44 H 0.080 0.920 45 H 0.228 0.772 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.958 14.071 -2.066 17.362 hybrid contribution -1.267 -1.522 -0.380 2.017 sum 8.690 12.549 -2.446 15.459 Atomic orbital electron populations 1.20874 0.81067 1.06467 1.06873 1.25230 1.02017 0.88024 0.93215 1.79883 0.88707 1.20811 1.16237 1.93350 1.21593 1.14063 1.85958 1.79849 1.19068 0.91055 1.13713 1.24329 0.89366 0.99254 0.94727 1.20594 1.08033 0.87272 0.96122 1.20341 0.76559 0.81973 0.90536 1.90761 1.52461 1.55902 1.47494 1.45766 1.65544 1.13656 1.10001 1.21390 1.01443 0.93186 0.83188 1.22008 0.90841 0.94715 0.96288 0.91519 1.21928 0.96792 0.99705 1.02106 1.61603 1.05412 1.04254 1.53133 1.22435 0.94693 0.97552 0.97521 1.21815 0.97824 0.91571 0.96590 1.20726 0.85803 0.82761 0.87397 1.90458 1.65508 1.41656 1.51690 1.41963 1.35594 1.09456 1.34635 1.19627 1.15567 0.95555 1.14687 0.90054 1.25977 1.00676 0.94611 1.00225 1.69671 1.44320 1.01239 1.41213 0.84983 0.78012 0.77602 0.78118 1.19992 1.20047 1.19526 0.85417 0.88632 0.87418 0.81144 0.83307 0.74092 0.90458 0.91829 0.90534 0.91676 0.91943 0.92330 0.90381 0.95694 0.86747 0.92004 0.77229 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.90 10.05 71.24 0.72 -0.19 16 2 C 0.10 1.85 7.19 43.49 0.31 2.16 16 3 N -0.31 -7.81 12.98 -47.16 -0.61 -8.42 16 4 O -0.02 -0.47 13.71 70.16 0.96 0.49 16 5 N -0.29 -7.63 12.98 -47.16 -0.61 -8.24 16 6 C 0.11 2.11 5.68 43.49 0.25 2.36 16 7 C -0.08 -0.95 5.87 29.10 0.17 -0.78 16 8 C 0.52 9.44 7.82 87.66 0.69 10.12 16 9 O -0.59 -15.92 16.03 -3.03 -0.05 -15.97 16 10 N -0.70 -11.08 5.05 -463.06 -2.34 -13.42 16 11 C 0.13 2.23 4.59 86.38 0.40 2.63 16 12 C 0.07 1.18 2.34 44.92 0.11 1.29 16 13 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 14 C -0.15 -2.19 8.88 71.98 0.64 -1.55 16 15 N -0.52 -12.36 3.73 -901.59 -3.37 -15.72 16 16 C 0.03 0.66 8.66 127.69 1.11 1.77 16 17 C 0.05 1.50 5.27 85.56 0.45 1.95 16 18 C 0.45 18.55 7.45 87.66 0.65 19.20 16 19 O -0.61 -29.05 13.93 -3.05 -0.04 -29.10 16 20 N -0.58 -27.21 5.29 -306.98 -1.62 -28.83 16 21 C -0.32 -17.21 9.68 84.04 0.81 -16.39 16 22 H 0.08 4.58 7.16 -2.91 -0.02 4.56 16 23 C -0.02 -0.79 5.50 84.93 0.47 -0.32 16 24 N -0.92 -47.82 13.05 21.66 0.28 -47.54 16 25 Si 0.99 40.95 29.55 68.60 2.03 42.98 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 27 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 28 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 29 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.11 0.79 7.77 -2.39 -0.02 0.77 16 32 H 0.17 0.74 7.78 -2.39 -0.02 0.72 16 33 H 0.15 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.42 6.16 7.42 -92.70 -0.69 5.48 16 35 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.06 1.17 6.71 -2.39 -0.02 1.16 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.06 0.98 7.31 -2.39 -0.02 0.97 16 39 H 0.06 0.97 6.21 -2.39 -0.01 0.95 16 40 H 0.06 1.99 5.80 -2.39 -0.01 1.97 16 41 H 0.08 1.72 6.48 -2.38 -0.02 1.71 16 42 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.11 2.81 5.85 -2.38 -0.01 2.79 16 44 H 0.06 1.62 8.12 -2.39 -0.02 1.60 16 45 H 0.39 17.80 7.90 -92.71 -0.73 17.07 16 46 H 0.28 13.45 8.31 -92.71 -0.77 12.68 16 Total: -1.00 -74.89 386.41 1.02 -73.87 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: -0.37 Total: 27.65 kcal Atomic # 6 Polarization: 15.48 SS G_CDS: 6.76 Total: 22.25 kcal Atomic # 7 Polarization: -113.90 SS G_CDS: -8.27 Total: -122.17 kcal Atomic # 8 Polarization: -45.45 SS G_CDS: 0.87 Total: -44.57 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -74.89 1.02 -73.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329587468.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.231 kcal (2) G-P(sol) polarization free energy of solvation -74.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds