Wall clock time and date at job start Tue Mar 31 2020 22:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30826 * 119.23035 * 2 1 4 4 C 1.33786 * 121.72257 * 179.97438 * 3 2 1 5 5 C 1.40529 * 120.83050 * 180.02562 * 4 3 2 6 6 C 1.36128 * 119.81412 * 180.27085 * 5 4 3 7 7 C 1.39349 * 121.09498 * 359.53953 * 6 5 4 8 8 C 1.36134 * 120.83790 * 0.44750 * 7 6 5 9 9 C 1.40553 * 119.61637 * 359.78999 * 8 7 6 10 10 C 1.40490 * 121.22504 * 179.97438 * 9 8 7 11 11 C 1.39037 * 117.96528 * 180.02562 * 10 9 8 12 12 C 1.47761 * 120.27168 * 179.97438 * 11 10 9 13 13 O 1.21559 * 120.00292 * 173.69349 * 12 11 10 14 14 N 1.34785 * 119.99760 * 353.68569 * 12 11 10 15 15 C 1.46493 * 119.99985 * 180.02562 * 14 12 11 16 16 H 1.09002 * 112.84972 * 23.80620 * 15 14 12 17 17 C 1.53780 * 113.61544 * 155.00027 * 15 14 12 18 18 C 1.53779 * 87.08027 * 89.11690 * 17 15 14 19 19 H 1.09003 * 113.61867 * 270.80576 * 18 17 15 20 20 C 1.53003 * 113.61792 * 139.98323 * 18 17 15 21 21 N 1.46496 * 109.47375 * 175.00319 * 20 18 17 22 22 C 1.36933 * 119.99922 * 180.02562 * 21 20 18 23 23 H 1.08001 * 120.00340 * 359.97438 * 22 21 20 24 24 C 1.38815 * 120.00154 * 180.02562 * 22 21 20 25 25 N 1.31615 * 120.00479 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 119.99746 * 359.97438 * 24 22 21 27 27 H 1.48505 * 109.46821 * 90.00358 * 26 24 22 28 28 H 1.48498 * 109.47421 * 210.00292 * 26 24 22 29 29 H 1.48498 * 109.47545 * 330.00570 * 26 24 22 30 30 C 1.53779 * 87.08228 * 25.43281 * 18 17 15 31 31 H 1.08997 * 109.47146 * 263.29450 * 1 2 3 32 32 H 1.09012 * 109.47044 * 23.29435 * 1 2 3 33 33 H 1.09001 * 109.46830 * 143.28778 * 1 2 3 34 34 H 1.07996 * 120.09397 * 359.97438 * 5 4 3 35 35 H 1.08001 * 119.45438 * 179.74833 * 6 5 4 36 36 H 1.08003 * 119.58364 * 180.21509 * 7 6 5 37 37 H 1.07993 * 120.19539 * 179.77239 * 8 7 6 38 38 H 1.07999 * 121.01317 * 0.02562 * 10 9 8 39 39 H 0.97002 * 119.99613 * 0.02562 * 14 12 11 40 40 H 1.09000 * 113.61690 * 203.66728 * 17 15 14 41 41 H 1.09005 * 113.61198 * 334.57087 * 17 15 14 42 42 H 1.09002 * 109.46565 * 295.00404 * 20 18 17 43 43 H 1.09001 * 109.46777 * 54.99711 * 20 18 17 44 44 H 0.97000 * 120.00248 * 359.97438 * 21 20 18 45 45 H 0.96996 * 120.00448 * 179.97438 * 25 24 22 46 46 H 1.09002 * 113.61732 * 220.01882 * 30 18 17 47 47 H 1.09001 * 113.61070 * 89.11477 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1458 1.1417 0.0000 4 6 3.4824 1.1998 0.0005 5 6 4.1495 2.4367 0.0010 6 6 5.5103 2.4718 -0.0040 7 6 6.2605 1.2975 -0.0002 8 6 5.6512 0.0801 -0.0004 9 6 4.2476 0.0059 0.0000 10 6 3.5838 -1.2322 -0.0007 11 6 2.1934 -1.2266 -0.0008 12 6 1.4434 -2.4997 -0.0021 13 8 0.2333 -2.4924 0.1134 14 7 2.1009 -3.6691 -0.1316 15 6 1.3573 -4.9313 -0.1334 16 1 0.3172 -4.8093 -0.4357 17 6 2.0821 -6.0722 -0.8667 18 6 2.7502 -6.4062 0.4775 19 1 3.6850 -5.8713 0.6454 20 6 2.8681 -7.9077 0.7471 21 7 3.6194 -8.1239 1.9860 22 6 3.8528 -9.3974 2.4317 23 1 3.4828 -10.2425 1.8702 24 6 4.5642 -9.6023 3.6060 25 7 4.7882 -10.8264 4.0347 26 14 5.2037 -8.1407 4.5777 27 1 4.1789 -7.7163 5.5652 28 1 6.4481 -8.5262 5.2904 29 1 5.4922 -7.0175 3.6501 30 6 1.5342 -5.7523 1.1547 31 1 -0.3633 -0.1200 1.0206 32 1 -0.3634 0.9440 -0.4064 33 1 -0.3633 -0.8238 -0.6143 34 1 3.5841 3.3569 0.0006 35 1 6.0170 3.4256 -0.0077 36 1 7.3391 1.3538 -0.0008 37 1 6.2428 -0.8234 -0.0011 38 1 4.1366 -2.1600 -0.0011 39 1 3.0666 -3.6749 -0.2235 40 1 1.4133 -6.8534 -1.2280 41 1 2.7816 -5.7269 -1.6281 42 1 1.8717 -8.3382 0.8465 43 1 3.3894 -8.3858 -0.0822 44 1 3.9521 -7.3650 2.4902 45 1 5.2856 -10.9696 4.8550 46 1 1.7913 -5.1489 2.0253 47 1 0.7156 -6.4462 1.3461 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330605947.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:20 Heat of formation + Delta-G solvation = 56.434077 kcal Electronic energy + Delta-G solvation = -28036.844806 eV Core-core repulsion = 24185.524200 eV Total energy + Delta-G solvation = -3851.320606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.50311 -40.24420 -38.70253 -37.33322 -34.89878 -34.26698 -33.08716 -32.19286 -31.25468 -30.50057 -28.17544 -27.25453 -25.66770 -25.20987 -23.36347 -22.95199 -22.48067 -21.56443 -21.37182 -19.35001 -18.87842 -17.80474 -17.59174 -17.19586 -16.10086 -16.01683 -15.62491 -15.15535 -14.98276 -14.76934 -14.56363 -14.39830 -14.29003 -13.92449 -13.84483 -13.48787 -13.29551 -13.19775 -12.74387 -12.55735 -12.38353 -12.31564 -12.16552 -11.90390 -11.85679 -11.71552 -11.46529 -10.97608 -10.92478 -10.68480 -10.33218 -10.24939 -10.22174 -9.95498 -9.72479 -9.59966 -9.30078 -9.04107 -8.89685 -8.70221 -7.23808 -5.78415 -3.13535 -0.24346 0.23212 1.40680 2.17816 2.77610 2.87352 3.33913 3.37443 3.42824 3.65908 3.77925 4.04782 4.10782 4.22521 4.33764 4.50877 4.56785 4.60390 4.64627 4.65374 4.79171 4.94140 4.94573 4.97271 5.17793 5.25951 5.42591 5.49027 5.51187 5.53256 5.58598 5.64639 5.67181 5.75116 5.79937 5.85451 5.89631 5.91424 5.95794 6.04823 6.05387 6.15861 6.20482 6.38372 6.47912 6.65044 6.77764 7.18638 7.52231 7.90297 7.98286 8.40916 9.20261 9.92725 10.12733 11.40174 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011840 B = 0.002529 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.246397 B =11067.431040 C =12648.917696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.213 3.787 3 N -0.482 5.482 4 C 0.151 3.849 5 C -0.103 4.103 6 C -0.088 4.088 7 C -0.124 4.124 8 C -0.084 4.084 9 C -0.120 4.120 10 C -0.012 4.012 11 C -0.187 4.187 12 C 0.566 3.434 13 O -0.524 6.524 14 N -0.704 5.704 15 C 0.116 3.884 16 H 0.104 0.896 17 C -0.136 4.136 18 C -0.120 4.120 19 H 0.085 0.915 20 C 0.167 3.833 21 N -0.756 5.756 22 C -0.244 4.244 23 H 0.090 0.910 24 C 0.003 3.997 25 N -0.935 5.935 26 Si 0.886 3.114 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.279 1.279 30 C -0.141 4.141 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.137 0.863 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.134 0.866 38 H 0.145 0.855 39 H 0.399 0.601 40 H 0.099 0.901 41 H 0.070 0.930 42 H 0.030 0.970 43 H 0.027 0.973 44 H 0.360 0.640 45 H 0.259 0.741 46 H 0.067 0.933 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.371 27.649 -12.726 30.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.060 3.940 3 N -0.191 5.191 4 C 0.030 3.970 5 C -0.121 4.121 6 C -0.108 4.108 7 C -0.142 4.142 8 C -0.103 4.103 9 C -0.122 4.122 10 C -0.038 4.038 11 C -0.192 4.192 12 C 0.353 3.647 13 O -0.401 6.401 14 N -0.355 5.355 15 C 0.011 3.989 16 H 0.122 0.878 17 C -0.174 4.174 18 C -0.139 4.139 19 H 0.103 0.897 20 C 0.040 3.960 21 N -0.401 5.401 22 C -0.374 4.374 23 H 0.108 0.892 24 C -0.193 4.193 25 N -0.583 5.583 26 Si 0.716 3.284 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.205 1.205 30 C -0.179 4.179 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.123 0.877 34 H 0.155 0.845 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.152 0.848 38 H 0.163 0.837 39 H 0.234 0.766 40 H 0.117 0.883 41 H 0.089 0.911 42 H 0.047 0.953 43 H 0.044 0.956 44 H 0.192 0.808 45 H 0.069 0.931 46 H 0.086 0.914 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.641 28.229 -12.638 31.041 hybrid contribution 1.781 0.097 0.903 1.999 sum -0.860 28.326 -11.735 30.673 Atomic orbital electron populations 1.21126 0.87176 1.04006 1.04544 1.21608 0.97730 0.86138 0.88501 1.67925 1.08203 1.28076 1.14896 1.19030 0.89160 0.93049 0.95798 1.20832 0.94243 0.96420 1.00624 1.21014 0.93692 0.98943 0.97191 1.20964 1.00624 0.92236 1.00344 1.21093 0.92407 0.98918 0.97894 1.18770 0.95042 0.93553 1.04811 1.22025 0.93220 0.97826 0.90760 1.20803 0.94011 0.95318 1.09108 1.17912 0.87187 0.83104 0.76538 1.90743 1.13387 1.86830 1.49154 1.45617 1.10676 1.05379 1.73818 1.21986 0.96836 0.81923 0.98130 0.87756 1.23308 0.99851 0.97368 0.96917 1.22830 0.97513 0.98194 0.95326 0.89681 1.20618 0.95282 0.91000 0.89146 1.42695 1.66473 1.05121 1.25803 1.19076 1.29015 0.83969 1.05295 0.89245 1.24682 1.00660 0.95946 0.97995 1.69698 1.45769 1.18639 1.24175 0.86531 0.78611 0.82887 0.80348 1.21087 1.21745 1.20523 1.23462 0.99123 0.98645 0.96720 0.89639 0.91151 0.87683 0.84474 0.85033 0.85165 0.84787 0.83748 0.76598 0.88287 0.91133 0.95262 0.95553 0.80768 0.93065 0.91430 0.88622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 8.82 36.01 0.32 -0.84 16 2 C 0.21 2.47 6.82 -82.15 -0.56 1.91 16 3 N -0.48 -5.72 10.20 -6.94 -0.07 -5.79 16 4 C 0.15 1.61 6.61 -84.79 -0.56 1.05 16 5 C -0.10 -0.85 9.97 -39.48 -0.39 -1.25 16 6 C -0.09 -0.56 9.94 -39.93 -0.40 -0.96 16 7 C -0.12 -0.77 9.96 -39.92 -0.40 -1.17 16 8 C -0.08 -0.61 9.77 -39.47 -0.39 -0.99 16 9 C -0.12 -1.13 5.74 -106.81 -0.61 -1.74 16 10 C -0.01 -0.11 9.38 -38.44 -0.36 -0.47 16 11 C -0.19 -2.01 5.88 -104.83 -0.62 -2.62 16 12 C 0.57 6.56 7.69 -12.36 -0.10 6.46 16 13 O -0.52 -7.30 12.90 5.31 0.07 -7.23 16 14 N -0.70 -7.05 5.21 -53.99 -0.28 -7.33 16 15 C 0.12 1.27 4.32 -67.12 -0.29 0.98 16 16 H 0.10 1.20 7.46 -51.93 -0.39 0.82 16 17 C -0.14 -1.41 7.39 -25.92 -0.19 -1.61 16 18 C -0.12 -1.63 3.63 -89.81 -0.33 -1.95 16 19 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 20 C 0.17 3.05 6.10 -4.04 -0.02 3.03 16 21 N -0.76 -17.66 5.41 -59.91 -0.32 -17.99 16 22 C -0.24 -6.89 10.47 -15.06 -0.16 -7.05 16 23 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 24 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 25 N -0.93 -29.41 13.97 55.49 0.78 -28.64 16 26 Si 0.89 22.07 27.74 -169.99 -4.71 17.35 16 27 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 28 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 29 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 30 C -0.14 -1.84 7.43 -25.92 -0.19 -2.03 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.10 1.17 5.81 -51.93 -0.30 0.86 16 34 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 36 H 0.13 0.50 8.06 -52.48 -0.42 0.08 16 37 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 38 H 0.14 0.87 6.53 -52.49 -0.34 0.52 16 39 H 0.40 3.14 6.81 -40.82 -0.28 2.86 16 40 H 0.10 0.98 8.10 -51.93 -0.42 0.56 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.03 0.55 7.84 -51.93 -0.41 0.14 16 43 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.36 8.21 5.53 -40.82 -0.23 7.98 16 45 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 46 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.10 1.28 7.90 -51.93 -0.41 0.87 16 LS Contribution 385.02 15.07 5.80 5.80 Total: -1.00 -34.63 385.02 -10.68 -45.31 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -6.59 Total: 7.77 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -5.34 Total: -9.25 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: 0.10 Total: -59.75 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: 0.07 Total: -7.23 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.71 Total: 17.35 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.63 -10.68 -45.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330605947.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.744 kcal (2) G-P(sol) polarization free energy of solvation -34.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds