Wall clock time and date at job start Tue Mar 31 2020 22:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30826 * 119.23035 * 2 1 4 4 C 1.33786 * 121.72257 * 179.97438 * 3 2 1 5 5 C 1.40529 * 120.83050 * 180.02562 * 4 3 2 6 6 C 1.36128 * 119.81412 * 180.27085 * 5 4 3 7 7 C 1.39349 * 121.09498 * 359.53953 * 6 5 4 8 8 C 1.36134 * 120.83790 * 0.44750 * 7 6 5 9 9 C 1.40553 * 119.61637 * 359.78999 * 8 7 6 10 10 C 1.40490 * 121.22504 * 179.97438 * 9 8 7 11 11 C 1.39037 * 117.96528 * 180.02562 * 10 9 8 12 12 C 1.47761 * 120.27168 * 179.97438 * 11 10 9 13 13 O 1.21559 * 120.00292 * 173.69349 * 12 11 10 14 14 N 1.34785 * 119.99760 * 353.68569 * 12 11 10 15 15 C 1.46493 * 119.99985 * 180.02562 * 14 12 11 16 16 H 1.09002 * 112.84972 * 23.80620 * 15 14 12 17 17 C 1.53780 * 113.61544 * 155.00027 * 15 14 12 18 18 C 1.53779 * 87.08027 * 89.11690 * 17 15 14 19 19 H 1.09003 * 113.61867 * 270.80576 * 18 17 15 20 20 C 1.53003 * 113.61792 * 139.98323 * 18 17 15 21 21 N 1.46496 * 109.47375 * 175.00319 * 20 18 17 22 22 C 1.36933 * 119.99922 * 180.02562 * 21 20 18 23 23 H 1.08001 * 120.00340 * 359.97438 * 22 21 20 24 24 C 1.38815 * 120.00154 * 180.02562 * 22 21 20 25 25 N 1.31615 * 120.00479 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 119.99746 * 359.97438 * 24 22 21 27 27 H 1.48505 * 109.46821 * 90.00358 * 26 24 22 28 28 H 1.48498 * 109.47421 * 210.00292 * 26 24 22 29 29 H 1.48498 * 109.47545 * 330.00570 * 26 24 22 30 30 C 1.53779 * 87.08228 * 25.43281 * 18 17 15 31 31 H 1.08997 * 109.47146 * 263.29450 * 1 2 3 32 32 H 1.09012 * 109.47044 * 23.29435 * 1 2 3 33 33 H 1.09001 * 109.46830 * 143.28778 * 1 2 3 34 34 H 1.07996 * 120.09397 * 359.97438 * 5 4 3 35 35 H 1.08001 * 119.45438 * 179.74833 * 6 5 4 36 36 H 1.08003 * 119.58364 * 180.21509 * 7 6 5 37 37 H 1.07993 * 120.19539 * 179.77239 * 8 7 6 38 38 H 1.07999 * 121.01317 * 0.02562 * 10 9 8 39 39 H 0.97002 * 119.99613 * 0.02562 * 14 12 11 40 40 H 1.09000 * 113.61690 * 203.66728 * 17 15 14 41 41 H 1.09005 * 113.61198 * 334.57087 * 17 15 14 42 42 H 1.09002 * 109.46565 * 295.00404 * 20 18 17 43 43 H 1.09001 * 109.46777 * 54.99711 * 20 18 17 44 44 H 0.97000 * 120.00248 * 359.97438 * 21 20 18 45 45 H 0.96996 * 120.00448 * 179.97438 * 25 24 22 46 46 H 1.09002 * 113.61732 * 220.01882 * 30 18 17 47 47 H 1.09001 * 113.61070 * 89.11477 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1458 1.1417 0.0000 4 6 3.4824 1.1998 0.0005 5 6 4.1495 2.4367 0.0010 6 6 5.5103 2.4718 -0.0040 7 6 6.2605 1.2975 -0.0002 8 6 5.6512 0.0801 -0.0004 9 6 4.2476 0.0059 0.0000 10 6 3.5838 -1.2322 -0.0007 11 6 2.1934 -1.2266 -0.0008 12 6 1.4434 -2.4997 -0.0021 13 8 0.2333 -2.4924 0.1134 14 7 2.1009 -3.6691 -0.1316 15 6 1.3573 -4.9313 -0.1334 16 1 0.3172 -4.8093 -0.4357 17 6 2.0821 -6.0722 -0.8667 18 6 2.7502 -6.4062 0.4775 19 1 3.6850 -5.8713 0.6454 20 6 2.8681 -7.9077 0.7471 21 7 3.6194 -8.1239 1.9860 22 6 3.8528 -9.3974 2.4317 23 1 3.4828 -10.2425 1.8702 24 6 4.5642 -9.6023 3.6060 25 7 4.7882 -10.8264 4.0347 26 14 5.2037 -8.1407 4.5777 27 1 4.1789 -7.7163 5.5652 28 1 6.4481 -8.5262 5.2904 29 1 5.4922 -7.0175 3.6501 30 6 1.5342 -5.7523 1.1547 31 1 -0.3633 -0.1200 1.0206 32 1 -0.3634 0.9440 -0.4064 33 1 -0.3633 -0.8238 -0.6143 34 1 3.5841 3.3569 0.0006 35 1 6.0170 3.4256 -0.0077 36 1 7.3391 1.3538 -0.0008 37 1 6.2428 -0.8234 -0.0011 38 1 4.1366 -2.1600 -0.0011 39 1 3.0666 -3.6749 -0.2235 40 1 1.4133 -6.8534 -1.2280 41 1 2.7816 -5.7269 -1.6281 42 1 1.8717 -8.3382 0.8465 43 1 3.3894 -8.3858 -0.0822 44 1 3.9521 -7.3650 2.4902 45 1 5.2856 -10.9696 4.8550 46 1 1.7913 -5.1489 2.0253 47 1 0.7156 -6.4462 1.3461 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330605947.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:19 Heat of formation + Delta-G solvation = 34.123026 kcal Electronic energy + Delta-G solvation = -28037.812286 eV Core-core repulsion = 24185.524200 eV Total energy + Delta-G solvation = -3852.288086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.21486 -41.10104 -39.62851 -38.02264 -36.50672 -35.21775 -34.10934 -33.14609 -32.87729 -31.19461 -29.05307 -28.59781 -26.62139 -26.00411 -24.83318 -23.66781 -23.26084 -22.85908 -22.32922 -20.50269 -19.59320 -19.45568 -18.48536 -17.92839 -16.98235 -16.70812 -16.64586 -16.42447 -16.02992 -15.80868 -15.54794 -15.46632 -15.29064 -14.96932 -14.80801 -14.48769 -14.37813 -14.03330 -13.96745 -13.90402 -13.50919 -13.34358 -13.12126 -12.97013 -12.74890 -12.71643 -12.44536 -12.36556 -12.16078 -11.87364 -11.69570 -11.65474 -11.40130 -11.18015 -11.05821 -10.90230 -10.52292 -10.14326 -9.74102 -9.29610 -9.27099 -8.02773 -5.35608 -0.87432 -0.44092 0.79888 1.35891 1.41077 1.47319 1.48078 1.95571 2.14132 2.48237 3.00222 3.10790 3.28491 3.39585 3.45486 3.48152 3.57032 3.60358 3.76917 3.87439 3.94004 4.02841 4.12257 4.19428 4.29209 4.37291 4.53393 4.54954 4.62639 4.72236 4.74582 4.80461 4.87287 4.88422 4.89907 4.93306 5.00002 5.02897 5.13775 5.20446 5.27283 5.33575 5.35127 5.43322 5.47421 5.65515 5.76983 5.83655 6.21714 6.40771 6.79750 7.08802 7.09074 7.86438 8.05126 9.19019 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011840 B = 0.002529 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.246397 B =11067.431040 C =12648.917696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.194 3.806 3 N -0.505 5.505 4 C 0.125 3.875 5 C -0.126 4.126 6 C -0.075 4.075 7 C -0.122 4.122 8 C -0.088 4.088 9 C -0.136 4.136 10 C 0.001 3.999 11 C -0.206 4.206 12 C 0.567 3.433 13 O -0.554 6.554 14 N -0.694 5.694 15 C 0.126 3.874 16 H 0.100 0.900 17 C -0.117 4.117 18 C -0.115 4.115 19 H 0.096 0.904 20 C 0.161 3.839 21 N -0.758 5.758 22 C -0.234 4.234 23 H 0.055 0.945 24 C -0.068 4.068 25 N -0.986 5.986 26 Si 0.958 3.042 27 H -0.282 1.282 28 H -0.296 1.296 29 H -0.247 1.247 30 C -0.146 4.146 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.140 0.860 35 H 0.161 0.839 36 H 0.161 0.839 37 H 0.160 0.840 38 H 0.176 0.824 39 H 0.411 0.589 40 H 0.105 0.895 41 H 0.093 0.907 42 H 0.024 0.976 43 H 0.026 0.974 44 H 0.366 0.634 45 H 0.258 0.742 46 H 0.058 0.942 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.000 30.133 -13.578 33.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.041 3.959 3 N -0.214 5.214 4 C 0.004 3.996 5 C -0.144 4.144 6 C -0.095 4.095 7 C -0.140 4.140 8 C -0.106 4.106 9 C -0.138 4.138 10 C -0.025 4.025 11 C -0.211 4.211 12 C 0.355 3.645 13 O -0.434 6.434 14 N -0.345 5.345 15 C 0.021 3.979 16 H 0.118 0.882 17 C -0.156 4.156 18 C -0.134 4.134 19 H 0.114 0.886 20 C 0.036 3.964 21 N -0.403 5.403 22 C -0.366 4.366 23 H 0.073 0.927 24 C -0.259 4.259 25 N -0.637 5.637 26 Si 0.785 3.215 27 H -0.209 1.209 28 H -0.222 1.222 29 H -0.171 1.171 30 C -0.184 4.184 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.158 0.842 35 H 0.179 0.821 36 H 0.179 0.821 37 H 0.177 0.823 38 H 0.193 0.807 39 H 0.249 0.751 40 H 0.124 0.876 41 H 0.112 0.888 42 H 0.042 0.958 43 H 0.044 0.956 44 H 0.199 0.801 45 H 0.066 0.934 46 H 0.077 0.923 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.267 30.750 -13.541 33.600 hybrid contribution 1.093 -0.667 1.104 1.691 sum 0.826 30.083 -12.437 32.563 Atomic orbital electron populations 1.21016 0.87278 1.03849 1.03980 1.21733 0.98033 0.86754 0.89403 1.67888 1.09318 1.28375 1.15837 1.19461 0.89009 0.94614 0.96530 1.21023 0.95379 0.95910 1.02134 1.21420 0.92878 1.00611 0.94590 1.21401 1.02212 0.91677 0.98698 1.21438 0.91434 1.00552 0.97194 1.19027 0.96255 0.93226 1.05248 1.22356 0.92490 0.98994 0.88643 1.20693 0.94865 0.94398 1.11178 1.18058 0.86866 0.83670 0.75900 1.90730 1.14747 1.87266 1.50656 1.45487 1.11269 1.04545 1.73206 1.21806 0.97020 0.82245 0.96826 0.88236 1.23236 0.99693 0.96864 0.95787 1.22782 0.98351 0.94526 0.97749 0.88576 1.20827 0.94020 0.94674 0.86927 1.42719 1.66914 1.03303 1.27385 1.19073 1.27610 0.85205 1.04675 0.92739 1.25559 1.01752 0.99082 0.99535 1.69890 1.47419 1.21430 1.24923 0.85370 0.77433 0.79858 0.78878 1.20873 1.22227 1.17098 1.23479 0.98734 0.98857 0.97369 0.90249 0.90624 0.88562 0.84217 0.82093 0.82149 0.82253 0.80706 0.75088 0.87625 0.88798 0.95844 0.95629 0.80137 0.93373 0.92327 0.89391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.29 8.82 71.24 0.63 -1.66 16 2 C 0.19 4.58 6.82 43.27 0.30 4.87 16 3 N -0.50 -12.22 10.20 -175.85 -1.79 -14.01 16 4 C 0.12 2.58 6.61 40.29 0.27 2.85 16 5 C -0.13 -1.95 9.97 22.34 0.22 -1.72 16 6 C -0.08 -0.72 9.94 22.05 0.22 -0.50 16 7 C -0.12 -1.03 9.96 22.05 0.22 -0.81 16 8 C -0.09 -0.95 9.77 22.34 0.22 -0.73 16 9 C -0.14 -2.27 5.74 -21.28 -0.12 -2.40 16 10 C 0.00 0.02 9.38 23.01 0.22 0.23 16 11 C -0.21 -4.27 5.88 -20.00 -0.12 -4.39 16 12 C 0.57 12.63 7.69 86.76 0.67 13.29 16 13 O -0.55 -15.53 12.90 -3.90 -0.05 -15.58 16 14 N -0.69 -12.23 5.21 -442.99 -2.31 -14.54 16 15 C 0.13 2.50 4.32 45.52 0.20 2.70 16 16 H 0.10 2.15 7.46 -2.39 -0.02 2.14 16 17 C -0.12 -2.07 7.39 31.12 0.23 -1.84 16 18 C -0.12 -2.82 3.63 -10.27 -0.04 -2.86 16 19 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 20 C 0.16 5.69 6.10 86.38 0.53 6.21 16 21 N -0.76 -34.45 5.41 -343.45 -1.86 -36.31 16 22 C -0.23 -13.37 10.47 84.03 0.88 -12.49 16 23 H 0.05 3.41 8.06 -2.91 -0.02 3.39 16 24 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 25 N -0.99 -63.44 13.97 21.65 0.30 -63.13 16 26 Si 0.96 45.02 27.74 68.60 1.90 46.92 16 27 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 28 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 29 H -0.25 -10.16 6.52 99.48 0.65 -9.51 16 30 C -0.15 -3.55 7.43 31.12 0.23 -3.32 16 31 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.10 2.26 5.81 -2.39 -0.01 2.25 16 34 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 35 H 0.16 0.53 8.06 -2.91 -0.02 0.51 16 36 H 0.16 0.39 8.06 -2.91 -0.02 0.37 16 37 H 0.16 0.85 8.06 -2.91 -0.02 0.82 16 38 H 0.18 1.42 6.53 -2.91 -0.02 1.40 16 39 H 0.41 5.01 6.81 -92.71 -0.63 4.38 16 40 H 0.11 1.79 8.10 -2.39 -0.02 1.77 16 41 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 42 H 0.02 0.86 7.84 -2.39 -0.02 0.84 16 43 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.37 15.72 5.53 -92.71 -0.51 15.20 16 45 H 0.26 15.76 8.31 -92.71 -0.77 14.98 16 46 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.09 2.28 7.90 -2.39 -0.02 2.26 16 Total: -1.00 -77.96 385.02 1.21 -76.75 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: -0.19 Total: 26.01 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: 5.21 Total: -6.12 kcal Atomic # 7 Polarization: -122.33 SS G_CDS: -5.66 Total: -127.99 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.05 Total: -15.58 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.90 Total: 46.92 kcal Total: -77.96 1.21 -76.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330605947.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.873 kcal (2) G-P(sol) polarization free energy of solvation -77.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds