Wall clock time and date at job start Tue Mar 31 2020 22:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30284 * 126.28325 * 2 1 4 4 N 1.28668 * 109.38027 * 179.97438 * 3 2 1 5 5 C 1.30275 * 109.37999 * 359.97438 * 4 3 2 6 6 C 1.50701 * 126.27755 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47064 * 90.02608 * 6 5 4 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00161 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99832 * 359.97438 * 9 7 6 11 11 C 1.46496 * 120.00271 * 180.02562 * 9 7 6 12 12 C 1.52994 * 109.47253 * 89.99668 * 11 9 7 13 13 H 1.08994 * 109.47416 * 64.99923 * 12 11 9 14 14 C 1.53002 * 109.47354 * 185.00097 * 12 11 9 15 15 N 1.46902 * 109.46982 * 305.00046 * 12 11 9 16 16 C 1.46902 * 110.99649 * 155.00278 * 15 12 11 17 17 C 1.50708 * 109.47032 * 179.97438 * 16 15 12 18 18 O 1.21298 * 119.99625 * 359.97438 * 17 16 15 19 19 N 1.34778 * 120.00293 * 179.97438 * 17 16 15 20 20 C 1.37090 * 120.00219 * 180.02562 * 19 17 16 21 21 H 1.08007 * 120.00046 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00282 * 180.02562 * 20 19 17 23 23 N 1.31412 * 119.99665 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00238 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47603 * 89.99543 * 24 22 20 26 26 H 1.48507 * 109.47169 * 209.99407 * 24 22 20 27 27 H 1.48501 * 109.47152 * 329.99478 * 24 22 20 28 28 O 1.34357 * 126.28408 * 180.27973 * 2 1 3 29 29 H 1.08999 * 109.47063 * 89.97851 * 1 2 3 30 30 H 1.09006 * 109.47033 * 209.97751 * 1 2 3 31 31 H 1.08997 * 109.46905 * 329.97817 * 1 2 3 32 32 H 1.09002 * 109.47060 * 210.02572 * 6 5 4 33 33 H 1.09001 * 109.47380 * 330.02660 * 6 5 4 34 34 H 1.08999 * 109.47333 * 89.99805 * 10 9 7 35 35 H 1.08997 * 109.47024 * 210.00620 * 10 9 7 36 36 H 1.09000 * 109.46875 * 330.00379 * 10 9 7 37 37 H 1.09000 * 109.47082 * 209.99555 * 11 9 7 38 38 H 1.09004 * 109.46754 * 329.99821 * 11 9 7 39 39 H 1.08998 * 109.47181 * 179.97438 * 14 12 11 40 40 H 1.08995 * 109.46928 * 300.00037 * 14 12 11 41 41 H 1.08998 * 109.47209 * 60.00018 * 14 12 11 42 42 H 1.00894 * 111.00418 * 31.04658 * 15 12 11 43 43 H 1.09000 * 109.47422 * 299.99338 * 16 15 12 44 44 H 1.08995 * 109.47825 * 59.99981 * 16 15 12 45 45 H 0.96999 * 119.99175 * 359.97438 * 19 17 16 46 46 H 0.96999 * 120.00105 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2780 1.0502 0.0000 4 7 3.5091 0.6761 0.0005 5 6 3.5654 -0.6254 0.0015 6 6 4.8177 -1.4638 0.0018 7 6 5.2350 -1.7427 1.4227 8 8 4.5803 -1.3036 2.3444 9 7 6.3364 -2.4794 1.6694 10 6 7.1276 -3.0094 0.5560 11 6 6.7418 -2.7510 3.0506 12 6 6.0811 -4.0446 3.5311 13 1 6.4603 -4.8843 2.9488 14 6 6.4035 -4.2630 5.0107 15 7 4.6259 -3.9452 3.3565 16 6 4.0191 -5.2768 3.2273 17 6 2.5291 -5.1349 3.0509 18 8 2.0226 -4.0329 3.0348 19 7 1.7595 -6.2325 2.9110 20 6 0.4042 -6.1034 2.7499 21 1 -0.0469 -5.1221 2.7356 22 6 -0.3893 -7.2348 2.6062 23 7 0.1595 -8.4288 2.6241 24 14 -2.2360 -7.0589 2.3875 25 1 -2.5557 -6.9549 0.9410 26 1 -2.9178 -8.2471 2.9608 27 1 -2.7030 -5.8349 3.0868 28 8 2.3021 -1.0830 -0.0053 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5142 32 1 4.6245 -2.4056 -0.5117 33 1 5.6147 -0.9265 -0.5122 34 1 7.8952 -2.2867 0.2793 35 1 7.6003 -3.9437 0.8586 36 1 6.4757 -3.1920 -0.2983 37 1 7.8256 -2.8577 3.0969 38 1 6.4304 -1.9248 3.6898 39 1 5.9324 -5.1844 5.3530 40 1 7.4832 -4.3367 5.1402 41 1 6.0242 -3.4233 5.5930 42 1 4.3955 -3.3645 2.5642 43 1 4.4410 -5.7859 2.3608 44 1 4.2243 -5.8585 4.1260 45 1 2.1647 -7.1137 2.9235 46 1 -0.3944 -9.2187 2.5234 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331440399.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:08 Heat of formation + Delta-G solvation = -18.728035 kcal Electronic energy + Delta-G solvation = -30554.844230 eV Core-core repulsion = 26289.415087 eV Total energy + Delta-G solvation = -4265.429143 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.11421 -40.42211 -38.23890 -36.79433 -36.03105 -35.10790 -33.87192 -33.57956 -31.50717 -31.13445 -30.58411 -27.85317 -27.36001 -26.37015 -25.70011 -23.95868 -22.86988 -22.40243 -20.61443 -19.63769 -19.16674 -17.92301 -17.76356 -17.15641 -16.81410 -16.67509 -16.38200 -15.63297 -15.26636 -14.90771 -14.78054 -14.43999 -14.41026 -13.86608 -13.71710 -13.66736 -13.43814 -13.17794 -12.92514 -12.76712 -12.70889 -12.47186 -12.46354 -12.26101 -12.06517 -11.83245 -11.76829 -11.63484 -11.54081 -11.36457 -11.10217 -10.91908 -10.88011 -10.39129 -10.20246 -10.11243 -9.48512 -9.38117 -8.91837 -8.36389 -7.96985 -7.91016 -6.39899 -3.80196 1.18968 2.22152 2.37018 2.43105 2.80237 3.17464 3.25932 3.32244 3.74254 3.94765 4.10376 4.18754 4.31943 4.36534 4.64150 4.73631 4.80360 4.84760 5.01604 5.07855 5.22053 5.24813 5.25402 5.26881 5.28065 5.32457 5.40501 5.43280 5.56517 5.60037 5.73473 5.74249 5.81729 5.90146 6.01326 6.03403 6.15525 6.30425 6.41534 7.00039 7.34900 7.56605 7.77657 7.95698 8.09079 8.36639 8.65005 9.20621 9.57286 10.10265 10.78173 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007909 B = 0.004328 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3539.280248 B = 6467.338985 C = 9316.651165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.175 3.825 3 N -0.296 5.296 4 N -0.277 5.277 5 C 0.178 3.822 6 C -0.044 4.044 7 C 0.509 3.491 8 O -0.489 6.489 9 N -0.622 5.622 10 C 0.072 3.928 11 C 0.114 3.886 12 C 0.066 3.934 13 H 0.041 0.959 14 C -0.138 4.138 15 N -0.658 5.658 16 C 0.050 3.950 17 C 0.440 3.560 18 O -0.574 6.574 19 N -0.567 5.567 20 C -0.296 4.296 21 H 0.102 0.898 22 C 0.021 3.979 23 N -0.904 5.904 24 Si 0.928 3.072 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.270 1.270 28 O -0.207 6.207 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.127 0.873 33 H 0.139 0.861 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.065 0.935 42 H 0.351 0.649 43 H 0.037 0.963 44 H 0.084 0.916 45 H 0.391 0.609 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.780 7.950 -7.215 18.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.035 4.035 3 N -0.144 5.144 4 N -0.124 5.124 5 C -0.034 4.034 6 C -0.085 4.085 7 C 0.294 3.706 8 O -0.361 6.361 9 N -0.358 5.358 10 C -0.071 4.071 11 C -0.009 4.009 12 C -0.045 4.045 13 H 0.059 0.941 14 C -0.197 4.197 15 N -0.297 5.297 16 C -0.083 4.083 17 C 0.225 3.775 18 O -0.457 6.457 19 N -0.204 5.204 20 C -0.426 4.426 21 H 0.119 0.881 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.205 1.205 26 H -0.209 1.209 27 H -0.194 1.194 28 O -0.085 6.085 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.124 0.876 32 H 0.145 0.855 33 H 0.157 0.843 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.113 0.887 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.175 0.825 43 H 0.055 0.945 44 H 0.103 0.897 45 H 0.224 0.776 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 14.201 10.066 -6.091 18.441 hybrid contribution -0.654 -2.328 -1.000 2.616 sum 13.547 7.738 -7.091 17.137 Atomic orbital electron populations 1.20408 0.80209 1.06299 1.05040 1.27993 0.97910 0.79390 0.98190 1.74344 0.95878 1.25576 1.18575 1.74271 1.12650 1.08836 1.16634 1.26659 0.84949 0.91171 1.00642 1.20091 0.90350 1.00564 0.97491 1.20136 0.80888 0.79012 0.90526 1.90913 1.51214 1.48634 1.45320 1.47830 1.27077 1.53232 1.07690 1.21916 0.96109 0.99767 0.89325 1.21796 0.98872 0.98725 0.81480 1.21942 0.89369 0.96096 0.97135 0.94142 1.21744 0.99920 1.02920 0.95068 1.60176 1.06938 1.12205 1.50347 1.21739 0.94759 0.91309 1.00524 1.19861 0.87733 0.85543 0.84333 1.90565 1.74390 1.25689 1.55072 1.41856 1.07481 1.07155 1.63915 1.19682 0.81890 0.94786 1.46202 0.88063 1.25234 1.00562 0.94613 0.97573 1.69613 1.36638 0.97639 1.50658 0.85882 0.82223 0.77899 0.78437 1.20477 1.20923 1.19414 1.84840 1.17043 1.38029 1.68628 0.88383 0.88150 0.87564 0.85545 0.84331 0.91893 0.90518 0.90843 0.89624 0.88685 0.92242 0.92806 0.91639 0.82497 0.94542 0.89736 0.77586 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.67 10.51 36.00 0.38 -0.29 16 2 C 0.18 2.76 8.48 -12.94 -0.11 2.65 16 3 N -0.30 -5.10 12.22 32.55 0.40 -4.70 16 4 N -0.28 -4.77 12.22 32.55 0.40 -4.37 16 5 C 0.18 2.80 6.97 -12.94 -0.09 2.71 16 6 C -0.04 -0.48 4.88 -29.03 -0.14 -0.62 16 7 C 0.51 7.05 6.04 -10.98 -0.07 6.98 16 8 O -0.49 -9.44 14.20 5.56 0.08 -9.36 16 9 N -0.62 -6.43 2.66 -181.57 -0.48 -6.92 16 10 C 0.07 0.41 10.24 59.85 0.61 1.02 16 11 C 0.11 1.22 5.20 -4.05 -0.02 1.20 16 12 C 0.07 0.84 2.95 -67.71 -0.20 0.64 16 13 H 0.04 0.47 7.80 -51.93 -0.40 0.06 16 14 C -0.14 -1.60 9.42 37.16 0.35 -1.25 16 15 N -0.66 -11.89 5.82 -107.99 -0.63 -12.52 16 16 C 0.05 0.94 5.97 -4.97 -0.03 0.91 16 17 C 0.44 10.92 7.82 -10.98 -0.09 10.84 16 18 O -0.57 -16.54 15.78 5.54 0.09 -16.45 16 19 N -0.57 -14.72 5.29 -10.96 -0.06 -14.78 16 20 C -0.30 -8.38 9.68 -14.94 -0.14 -8.53 16 21 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.74 13.05 55.50 0.72 -24.01 16 24 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 O -0.21 -3.61 10.87 5.40 0.06 -3.55 16 29 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.13 1.06 7.40 -51.93 -0.38 0.68 16 33 H 0.14 0.98 8.11 -51.93 -0.42 0.55 16 34 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.08 0.36 8.07 -51.93 -0.42 -0.06 16 36 H 0.07 0.33 6.44 -51.93 -0.33 -0.01 16 37 H 0.09 0.62 8.07 -51.93 -0.42 0.20 16 38 H 0.09 1.24 7.42 -51.93 -0.39 0.85 16 39 H 0.06 0.73 7.45 -51.93 -0.39 0.35 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.35 6.82 4.18 -39.30 -0.16 6.66 16 43 H 0.04 0.62 8.06 -51.93 -0.42 0.20 16 44 H 0.08 1.48 7.43 -51.93 -0.39 1.09 16 45 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 46 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 389.29 15.07 5.87 5.87 Total: -1.00 -39.59 389.29 -4.72 -44.30 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -6.49 Total: 13.63 kcal Atomic # 6 Polarization: 16.38 SS G_CDS: 0.36 Total: 16.74 kcal Atomic # 7 Polarization: -67.65 SS G_CDS: 0.35 Total: -67.30 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: 0.23 Total: -29.37 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -39.59 -4.72 -44.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331440399.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.575 kcal (2) G-P(sol) polarization free energy of solvation -39.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds