Wall clock time and date at job start Tue Mar 31 2020 22:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30284 * 126.28325 * 2 1 4 4 N 1.28668 * 109.38027 * 179.97438 * 3 2 1 5 5 C 1.30275 * 109.37999 * 359.97438 * 4 3 2 6 6 C 1.50701 * 126.27755 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47064 * 90.02608 * 6 5 4 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00161 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99832 * 359.97438 * 9 7 6 11 11 C 1.46496 * 120.00271 * 180.02562 * 9 7 6 12 12 C 1.52994 * 109.47253 * 89.99668 * 11 9 7 13 13 H 1.08994 * 109.47416 * 64.99923 * 12 11 9 14 14 C 1.53002 * 109.47354 * 185.00097 * 12 11 9 15 15 N 1.46902 * 109.46982 * 305.00046 * 12 11 9 16 16 C 1.46902 * 110.99649 * 155.00278 * 15 12 11 17 17 C 1.50708 * 109.47032 * 179.97438 * 16 15 12 18 18 O 1.21298 * 119.99625 * 359.97438 * 17 16 15 19 19 N 1.34778 * 120.00293 * 179.97438 * 17 16 15 20 20 C 1.37090 * 120.00219 * 180.02562 * 19 17 16 21 21 H 1.08007 * 120.00046 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00282 * 180.02562 * 20 19 17 23 23 N 1.31412 * 119.99665 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00238 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47603 * 89.99543 * 24 22 20 26 26 H 1.48507 * 109.47169 * 209.99407 * 24 22 20 27 27 H 1.48501 * 109.47152 * 329.99478 * 24 22 20 28 28 O 1.34357 * 126.28408 * 180.27973 * 2 1 3 29 29 H 1.08999 * 109.47063 * 89.97851 * 1 2 3 30 30 H 1.09006 * 109.47033 * 209.97751 * 1 2 3 31 31 H 1.08997 * 109.46905 * 329.97817 * 1 2 3 32 32 H 1.09002 * 109.47060 * 210.02572 * 6 5 4 33 33 H 1.09001 * 109.47380 * 330.02660 * 6 5 4 34 34 H 1.08999 * 109.47333 * 89.99805 * 10 9 7 35 35 H 1.08997 * 109.47024 * 210.00620 * 10 9 7 36 36 H 1.09000 * 109.46875 * 330.00379 * 10 9 7 37 37 H 1.09000 * 109.47082 * 209.99555 * 11 9 7 38 38 H 1.09004 * 109.46754 * 329.99821 * 11 9 7 39 39 H 1.08998 * 109.47181 * 179.97438 * 14 12 11 40 40 H 1.08995 * 109.46928 * 300.00037 * 14 12 11 41 41 H 1.08998 * 109.47209 * 60.00018 * 14 12 11 42 42 H 1.00894 * 111.00418 * 31.04658 * 15 12 11 43 43 H 1.09000 * 109.47422 * 299.99338 * 16 15 12 44 44 H 1.08995 * 109.47825 * 59.99981 * 16 15 12 45 45 H 0.96999 * 119.99175 * 359.97438 * 19 17 16 46 46 H 0.96999 * 120.00105 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2780 1.0502 0.0000 4 7 3.5091 0.6761 0.0005 5 6 3.5654 -0.6254 0.0015 6 6 4.8177 -1.4638 0.0018 7 6 5.2350 -1.7427 1.4227 8 8 4.5803 -1.3036 2.3444 9 7 6.3364 -2.4794 1.6694 10 6 7.1276 -3.0094 0.5560 11 6 6.7418 -2.7510 3.0506 12 6 6.0811 -4.0446 3.5311 13 1 6.4603 -4.8843 2.9488 14 6 6.4035 -4.2630 5.0107 15 7 4.6259 -3.9452 3.3565 16 6 4.0191 -5.2768 3.2273 17 6 2.5291 -5.1349 3.0509 18 8 2.0226 -4.0329 3.0348 19 7 1.7595 -6.2325 2.9110 20 6 0.4042 -6.1034 2.7499 21 1 -0.0469 -5.1221 2.7356 22 6 -0.3893 -7.2348 2.6062 23 7 0.1595 -8.4288 2.6241 24 14 -2.2360 -7.0589 2.3875 25 1 -2.5557 -6.9549 0.9410 26 1 -2.9178 -8.2471 2.9608 27 1 -2.7030 -5.8349 3.0868 28 8 2.3021 -1.0830 -0.0053 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5142 32 1 4.6245 -2.4056 -0.5117 33 1 5.6147 -0.9265 -0.5122 34 1 7.8952 -2.2867 0.2793 35 1 7.6003 -3.9437 0.8586 36 1 6.4757 -3.1920 -0.2983 37 1 7.8256 -2.8577 3.0969 38 1 6.4304 -1.9248 3.6898 39 1 5.9324 -5.1844 5.3530 40 1 7.4832 -4.3367 5.1402 41 1 6.0242 -3.4233 5.5930 42 1 4.3955 -3.3645 2.5642 43 1 4.4410 -5.7859 2.3608 44 1 4.2243 -5.8585 4.1260 45 1 2.1647 -7.1137 2.9235 46 1 -0.3944 -9.2187 2.5234 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331440399.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:08 Heat of formation + Delta-G solvation = -54.833735 kcal Electronic energy + Delta-G solvation = -30556.409891 eV Core-core repulsion = 26289.415087 eV Total energy + Delta-G solvation = -4266.994804 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.32651 -41.40970 -40.11748 -37.97380 -37.28846 -36.24494 -35.82154 -34.67027 -33.31861 -32.51456 -31.65305 -28.74771 -28.25773 -27.94340 -26.65472 -25.73795 -24.04191 -23.57002 -21.66206 -21.17286 -20.45399 -19.92884 -18.87237 -18.30795 -18.03073 -17.86351 -17.49177 -17.10376 -16.51910 -16.46317 -16.12135 -15.82930 -15.59850 -15.56218 -15.03564 -14.70541 -14.30465 -14.25411 -14.03120 -13.73541 -13.63665 -13.56978 -13.52940 -13.49019 -13.27548 -13.23979 -13.04732 -12.98109 -12.89476 -12.60115 -12.46520 -12.39878 -12.13684 -12.11203 -11.97423 -11.52674 -11.20130 -10.52806 -10.36191 -10.03129 -9.73619 -9.26119 -8.48103 -5.96861 0.02223 1.14671 1.25409 1.36012 1.39872 1.42070 1.52869 1.94746 2.02496 2.27893 2.72521 2.93705 3.18569 3.27547 3.39160 3.49541 3.75447 3.90287 4.01186 4.18461 4.22734 4.27353 4.29002 4.32892 4.40146 4.45709 4.46804 4.48849 4.54139 4.56986 4.63819 4.74781 4.87992 4.93947 4.97417 4.99854 5.06902 5.34327 5.38829 5.51945 5.91019 6.14038 6.20780 6.47285 6.59348 7.00527 7.11292 7.13923 7.53493 8.10623 8.69387 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007909 B = 0.004328 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3539.280248 B = 6467.338985 C = 9316.651165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.168 3.832 3 N -0.322 5.322 4 N -0.303 5.303 5 C 0.175 3.825 6 C -0.042 4.042 7 C 0.501 3.499 8 O -0.559 6.559 9 N -0.612 5.612 10 C 0.060 3.940 11 C 0.115 3.885 12 C 0.064 3.936 13 H 0.066 0.934 14 C -0.135 4.135 15 N -0.686 5.686 16 C 0.065 3.935 17 C 0.433 3.567 18 O -0.621 6.621 19 N -0.571 5.571 20 C -0.333 4.333 21 H 0.074 0.926 22 C -0.010 4.010 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.267 1.267 26 H -0.270 1.270 27 H -0.275 1.275 28 O -0.233 6.233 29 H 0.130 0.870 30 H 0.092 0.908 31 H 0.122 0.878 32 H 0.155 0.845 33 H 0.181 0.819 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.132 0.868 38 H 0.063 0.937 39 H 0.049 0.951 40 H 0.091 0.909 41 H 0.042 0.958 42 H 0.342 0.658 43 H 0.064 0.936 44 H 0.100 0.900 45 H 0.396 0.604 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.595 6.379 -8.558 19.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.042 4.042 3 N -0.169 5.169 4 N -0.149 5.149 5 C -0.037 4.037 6 C -0.082 4.082 7 C 0.288 3.712 8 O -0.437 6.437 9 N -0.346 5.346 10 C -0.081 4.081 11 C -0.008 4.008 12 C -0.046 4.046 13 H 0.084 0.916 14 C -0.193 4.193 15 N -0.324 5.324 16 C -0.068 4.068 17 C 0.220 3.780 18 O -0.507 6.507 19 N -0.209 5.209 20 C -0.463 4.463 21 H 0.092 0.908 22 C -0.210 4.210 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.192 1.192 26 H -0.194 1.194 27 H -0.200 1.200 28 O -0.113 6.113 29 H 0.148 0.852 30 H 0.111 0.889 31 H 0.141 0.859 32 H 0.172 0.828 33 H 0.198 0.802 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.150 0.850 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.110 0.890 41 H 0.061 0.939 42 H 0.165 0.835 43 H 0.082 0.918 44 H 0.118 0.882 45 H 0.230 0.770 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 16.100 8.454 -7.459 19.655 hybrid contribution -1.139 -1.873 -0.555 2.261 sum 14.961 6.580 -8.014 18.203 Atomic orbital electron populations 1.20696 0.77290 1.06638 1.07207 1.28934 0.99456 0.78782 0.97034 1.74255 0.96305 1.26431 1.19953 1.74171 1.12863 1.09850 1.17978 1.27602 0.85705 0.91336 0.99040 1.20467 0.89427 1.01809 0.96510 1.20627 0.81112 0.78681 0.90782 1.90885 1.53668 1.51768 1.47347 1.47940 1.26109 1.51692 1.08867 1.22326 0.96500 1.01141 0.88130 1.21835 1.01075 0.96518 0.81336 1.22138 0.86311 0.97992 0.98207 0.91648 1.21743 1.02203 1.01374 0.94021 1.60175 1.10496 1.11353 1.50378 1.21593 0.90256 0.92638 1.02299 1.20946 0.90229 0.84381 0.82418 1.90537 1.76010 1.27413 1.56736 1.41903 1.07046 1.07750 1.64170 1.19612 0.83445 0.94264 1.48939 0.90778 1.26011 1.04727 0.93957 0.96320 1.69668 1.38283 0.98112 1.49955 0.84958 0.76782 0.77920 0.78871 1.19208 1.19424 1.20034 1.84855 1.18117 1.39050 1.69241 0.85164 0.88889 0.85934 0.82761 0.80160 0.89273 0.88779 0.89392 0.85002 0.91843 0.93211 0.89034 0.93881 0.83474 0.91792 0.88197 0.77002 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.33 10.51 71.24 0.75 -0.58 16 2 C 0.17 5.52 8.48 88.34 0.75 6.27 16 3 N -0.32 -11.57 12.22 -165.50 -2.02 -13.60 16 4 N -0.30 -10.78 12.22 -165.50 -2.02 -12.80 16 5 C 0.18 5.65 6.97 88.34 0.62 6.27 16 6 C -0.04 -0.87 4.88 29.10 0.14 -0.73 16 7 C 0.50 13.69 6.04 87.66 0.53 14.21 16 8 O -0.56 -22.67 14.20 -3.02 -0.04 -22.71 16 9 N -0.61 -11.24 2.66 -846.77 -2.25 -13.49 16 10 C 0.06 0.41 10.24 127.77 1.31 1.72 16 11 C 0.11 2.22 5.20 86.38 0.45 2.67 16 12 C 0.06 1.48 2.95 44.91 0.13 1.61 16 13 H 0.07 1.23 7.80 -2.39 -0.02 1.21 16 14 C -0.14 -2.89 9.42 71.98 0.68 -2.21 16 15 N -0.69 -24.63 5.82 -495.58 -2.88 -27.51 16 16 C 0.06 2.40 5.97 85.56 0.51 2.91 16 17 C 0.43 22.00 7.82 87.66 0.69 22.69 16 18 O -0.62 -37.45 15.78 -3.09 -0.05 -37.50 16 19 N -0.57 -30.27 5.29 -306.97 -1.62 -31.90 16 20 C -0.33 -19.37 9.68 84.04 0.81 -18.55 16 21 H 0.07 4.64 7.16 -2.91 -0.02 4.62 16 22 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 23 N -0.92 -49.71 13.05 21.66 0.28 -49.42 16 24 Si 0.99 43.14 29.55 68.60 2.03 45.17 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 26 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 27 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 28 O -0.23 -8.48 10.87 -3.59 -0.04 -8.52 16 29 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 31 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.15 2.26 7.40 -2.39 -0.02 2.24 16 33 H 0.18 2.04 8.11 -2.39 -0.02 2.03 16 34 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.09 0.39 8.07 -2.39 -0.02 0.38 16 36 H 0.09 0.39 6.44 -2.39 -0.02 0.38 16 37 H 0.13 1.32 8.07 -2.39 -0.02 1.30 16 38 H 0.06 1.67 7.42 -2.39 -0.02 1.65 16 39 H 0.05 1.15 7.45 -2.39 -0.02 1.13 16 40 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.34 13.46 4.18 -89.70 -0.37 13.09 16 43 H 0.06 2.02 8.06 -2.39 -0.02 2.00 16 44 H 0.10 3.38 7.43 -2.39 -0.02 3.36 16 45 H 0.40 19.75 7.90 -92.71 -0.73 19.02 16 46 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -92.95 389.29 -0.87 -93.82 By element: Atomic # 1 Polarization: 42.34 SS G_CDS: -0.08 Total: 42.27 kcal Atomic # 6 Polarization: 28.37 SS G_CDS: 7.83 Total: 36.19 kcal Atomic # 7 Polarization: -138.20 SS G_CDS: -10.52 Total: -148.72 kcal Atomic # 8 Polarization: -68.61 SS G_CDS: -0.13 Total: -68.74 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -92.95 -0.87 -93.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331440399.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.990 kcal (2) G-P(sol) polarization free energy of solvation -92.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds