Wall clock time and date at job start Tue Mar 31 2020 22:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30276 * 126.28617 * 2 1 4 4 N 1.28660 * 109.38503 * 180.02562 * 3 2 1 5 5 C 1.30281 * 109.38108 * 359.97438 * 4 3 2 6 6 C 1.50701 * 126.28155 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.46939 * 90.02880 * 6 5 4 8 8 O 1.21280 * 119.99807 * 359.97438 * 7 6 5 9 9 N 1.34772 * 119.99951 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99852 * 359.97438 * 9 7 6 11 11 C 1.46498 * 119.99821 * 180.02562 * 9 7 6 12 12 C 1.53000 * 109.47043 * 269.99358 * 11 9 7 13 13 H 1.08999 * 109.47446 * 295.00641 * 12 11 9 14 14 C 1.52995 * 109.47146 * 174.99892 * 12 11 9 15 15 N 1.46906 * 109.46965 * 55.00259 * 12 11 9 16 16 C 1.46898 * 110.99888 * 204.99952 * 15 12 11 17 17 C 1.50705 * 109.46661 * 180.02562 * 16 15 12 18 18 O 1.21288 * 120.00125 * 359.97438 * 17 16 15 19 19 N 1.34775 * 119.99549 * 179.97438 * 17 16 15 20 20 C 1.37103 * 120.00062 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99229 * 0.02562 * 20 19 17 22 22 C 1.38942 * 120.00207 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99885 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00123 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46979 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47480 * 120.00092 * 24 22 20 27 27 H 1.48497 * 109.47080 * 240.00247 * 24 22 20 28 28 O 1.34356 * 107.43208 * 0.24445 * 5 4 3 29 29 H 1.08994 * 109.47208 * 89.97808 * 1 2 3 30 30 H 1.09004 * 109.47027 * 209.97719 * 1 2 3 31 31 H 1.09000 * 109.46667 * 329.97402 * 1 2 3 32 32 H 1.09002 * 109.47525 * 330.03203 * 6 5 4 33 33 H 1.08997 * 109.47461 * 210.02775 * 6 5 4 34 34 H 1.08997 * 109.47736 * 269.99960 * 10 9 7 35 35 H 1.08996 * 109.47163 * 30.00915 * 10 9 7 36 36 H 1.09005 * 109.46872 * 150.00666 * 10 9 7 37 37 H 1.09004 * 109.47353 * 149.99601 * 11 9 7 38 38 H 1.08999 * 109.47248 * 29.99851 * 11 9 7 39 39 H 1.09002 * 109.46959 * 60.00507 * 14 12 11 40 40 H 1.09003 * 109.47335 * 180.02562 * 14 12 11 41 41 H 1.09002 * 109.47311 * 300.00221 * 14 12 11 42 42 H 1.00902 * 110.99923 * 328.95894 * 15 12 11 43 43 H 1.08995 * 109.47296 * 299.99911 * 16 15 12 44 44 H 1.08997 * 109.47334 * 60.00212 * 16 15 12 45 45 H 0.97003 * 120.00664 * 0.02562 * 19 17 16 46 46 H 0.97010 * 119.99812 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2780 1.0501 0.0000 4 7 3.5090 0.6761 -0.0005 5 6 3.5654 -0.6255 -0.0004 6 6 4.8176 -1.4639 -0.0014 7 6 5.2360 -1.7437 1.4192 8 8 4.5819 -1.3050 2.3415 9 7 6.3375 -2.4804 1.6646 10 6 7.1278 -3.0098 0.5504 11 6 6.7438 -2.7528 3.0455 12 6 7.6873 -1.6487 3.5267 13 1 8.6080 -1.6779 2.9440 14 6 8.0127 -1.8648 5.0060 15 7 7.0397 -0.3415 3.3537 16 6 8.0385 0.7280 3.2253 17 6 7.3383 2.0509 3.0505 18 8 6.1264 2.0981 3.0340 19 7 8.0587 3.1816 2.9125 20 6 7.4217 4.3851 2.7529 21 1 6.3426 4.4271 2.7382 22 6 8.1644 5.5508 2.6111 23 7 9.4774 5.4996 2.6295 24 14 7.2965 7.1907 2.3944 25 1 5.8268 6.9785 2.4076 26 1 7.6755 8.1019 3.5041 27 1 7.6972 7.7954 1.0987 28 8 2.3021 -1.0831 -0.0051 29 1 -0.3633 0.0004 -1.0276 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5143 32 1 5.6144 -0.9264 -0.5156 33 1 4.6242 -2.4055 -0.5153 34 1 6.7525 -3.9952 0.2745 35 1 7.0470 -2.3378 -0.3039 36 1 8.1723 -3.0902 0.8518 37 1 7.2563 -3.7138 3.0906 38 1 5.8616 -2.7813 3.6849 39 1 8.4932 -2.8347 5.1343 40 1 8.6845 -1.0779 5.3490 41 1 7.0919 -1.8355 5.5886 42 1 6.4146 -0.3496 2.5617 43 1 8.6548 0.7594 4.1238 44 1 8.6699 0.5333 2.3584 45 1 9.0279 3.1438 2.9252 46 1 9.9959 6.3136 2.5309 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331440400.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:11 Heat of formation + Delta-G solvation = -54.660375 kcal Electronic energy + Delta-G solvation = -30385.314190 eV Core-core repulsion = 26118.326904 eV Total energy + Delta-G solvation = -4266.987286 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.30430 -41.40836 -40.11436 -37.96951 -37.26856 -36.24616 -35.82569 -34.66149 -33.32080 -32.50434 -31.63573 -28.74039 -28.25332 -27.95017 -26.65750 -25.74651 -24.06417 -23.50166 -21.65456 -21.16899 -20.44971 -19.93692 -18.87460 -18.29358 -18.09606 -17.86294 -17.39093 -17.15277 -16.55532 -16.48334 -16.14653 -15.79330 -15.61482 -15.53908 -15.05042 -14.69851 -14.29683 -14.24655 -13.99453 -13.71046 -13.63881 -13.54989 -13.49917 -13.48645 -13.27734 -13.22720 -12.99374 -12.92303 -12.89752 -12.59677 -12.46317 -12.38886 -12.15387 -11.97690 -11.95632 -11.53652 -11.20620 -10.55361 -10.35410 -10.02439 -9.73485 -9.25685 -8.49097 -5.97186 0.05312 1.13183 1.30038 1.32693 1.36852 1.41731 1.52525 1.95535 2.03375 2.27849 2.76317 2.94367 3.17206 3.34723 3.42275 3.50330 3.73921 3.90845 4.00405 4.17776 4.22351 4.27126 4.32432 4.36468 4.40764 4.46788 4.47386 4.53705 4.54210 4.56889 4.68850 4.74806 4.88021 4.94180 4.99873 5.01081 5.07373 5.34482 5.38729 5.52384 5.91226 6.14479 6.20879 6.48221 6.59480 7.00537 7.11893 7.23682 7.53794 8.12533 8.68781 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007882 B = 0.004064 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3551.442915 B = 6888.598375 C = 9689.859443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.170 3.830 3 N -0.340 5.340 4 N -0.317 5.317 5 C 0.177 3.823 6 C -0.040 4.040 7 C 0.501 3.499 8 O -0.559 6.559 9 N -0.612 5.612 10 C 0.060 3.940 11 C 0.116 3.884 12 C 0.062 3.938 13 H 0.064 0.936 14 C -0.135 4.135 15 N -0.686 5.686 16 C 0.067 3.933 17 C 0.432 3.568 18 O -0.620 6.620 19 N -0.572 5.572 20 C -0.332 4.332 21 H 0.068 0.932 22 C -0.009 4.009 23 N -0.918 5.918 24 Si 0.989 3.011 25 H -0.282 1.282 26 H -0.265 1.265 27 H -0.265 1.265 28 O -0.224 6.224 29 H 0.129 0.871 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.156 0.844 33 H 0.180 0.820 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.134 0.866 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.047 0.953 41 H 0.042 0.958 42 H 0.343 0.657 43 H 0.101 0.899 44 H 0.064 0.936 45 H 0.397 0.603 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.637 -25.618 -8.477 27.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.042 4.042 3 N -0.186 5.186 4 N -0.161 5.161 5 C -0.036 4.036 6 C -0.080 4.080 7 C 0.288 3.712 8 O -0.437 6.437 9 N -0.346 5.346 10 C -0.081 4.081 11 C -0.007 4.007 12 C -0.048 4.048 13 H 0.082 0.918 14 C -0.193 4.193 15 N -0.325 5.325 16 C -0.066 4.066 17 C 0.219 3.781 18 O -0.505 6.505 19 N -0.210 5.210 20 C -0.462 4.462 21 H 0.086 0.914 22 C -0.209 4.209 23 N -0.559 5.559 24 Si 0.813 3.187 25 H -0.207 1.207 26 H -0.190 1.190 27 H -0.190 1.190 28 O -0.105 6.105 29 H 0.147 0.853 30 H 0.135 0.865 31 H 0.129 0.871 32 H 0.173 0.827 33 H 0.197 0.803 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.152 0.848 38 H 0.083 0.917 39 H 0.111 0.889 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.166 0.834 43 H 0.119 0.881 44 H 0.081 0.919 45 H 0.231 0.769 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.366 -23.881 -7.380 25.565 hybrid contribution 0.129 0.172 -0.606 0.643 sum -5.237 -23.709 -7.986 25.560 Atomic orbital electron populations 1.20737 0.75993 1.07116 1.07330 1.29178 0.99598 0.78726 0.96649 1.74335 0.96465 1.27793 1.19999 1.74399 1.13201 1.11094 1.17453 1.27575 0.85994 0.90981 0.99013 1.20446 0.88834 1.02208 0.96515 1.20630 0.81492 0.78323 0.90783 1.90885 1.54723 1.50772 1.47298 1.47942 1.25752 1.52017 1.08895 1.22327 0.96838 1.00878 0.88054 1.21840 0.98831 0.98684 0.81317 1.22166 0.96459 0.87932 0.98270 0.91768 1.21743 1.01176 1.02408 0.93970 1.60183 1.18793 1.03011 1.50501 1.21575 0.93910 0.88835 1.02276 1.21027 0.87939 0.86802 0.82320 1.90577 1.16150 1.87414 1.56370 1.41875 1.09061 1.05584 1.64459 1.19605 0.92647 0.85058 1.48875 0.91415 1.25959 0.96215 1.02336 0.96355 1.69668 1.05266 1.30792 1.50187 0.84938 0.77746 0.77317 0.78707 1.20689 1.19007 1.19023 1.84711 1.17178 1.38376 1.70191 0.85306 0.86503 0.87101 0.82654 0.80271 0.88915 0.89613 0.88903 0.84815 0.91672 0.88898 0.93340 0.93830 0.83407 0.88051 0.91855 0.76945 0.91191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.80 10.51 71.24 0.75 -0.05 16 2 C 0.17 4.96 8.48 88.34 0.75 5.71 16 3 N -0.34 -13.62 12.22 -165.50 -2.02 -15.64 16 4 N -0.32 -13.50 12.22 -165.50 -2.02 -15.52 16 5 C 0.18 5.74 6.97 88.34 0.62 6.36 16 6 C -0.04 -0.83 4.88 29.10 0.14 -0.68 16 7 C 0.50 13.67 6.04 87.66 0.53 14.20 16 8 O -0.56 -22.68 14.19 -3.03 -0.04 -22.72 16 9 N -0.61 -11.19 2.66 -846.77 -2.25 -13.44 16 10 C 0.06 0.41 10.24 127.77 1.31 1.72 16 11 C 0.12 2.22 5.20 86.38 0.45 2.67 16 12 C 0.06 1.49 2.95 44.91 0.13 1.62 16 13 H 0.06 1.27 7.80 -2.39 -0.02 1.25 16 14 C -0.13 -2.95 9.41 71.98 0.68 -2.27 16 15 N -0.69 -25.93 5.82 -495.58 -2.88 -28.82 16 16 C 0.07 2.63 5.97 85.56 0.51 3.14 16 17 C 0.43 23.54 7.82 87.66 0.69 24.22 16 18 O -0.62 -40.41 15.78 -3.05 -0.05 -40.46 16 19 N -0.57 -32.36 5.29 -306.99 -1.62 -33.99 16 20 C -0.33 -20.77 9.68 84.04 0.81 -19.96 16 21 H 0.07 4.65 7.16 -2.91 -0.02 4.63 16 22 C -0.01 -0.51 5.50 84.92 0.47 -0.05 16 23 N -0.92 -52.04 13.05 21.66 0.28 -51.76 16 24 Si 0.99 46.59 29.55 68.60 2.03 48.62 16 25 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 27 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 28 O -0.22 -6.54 10.87 -3.61 -0.04 -6.58 16 29 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.16 2.68 7.40 -2.39 -0.02 2.66 16 33 H 0.18 1.58 8.11 -2.39 -0.02 1.56 16 34 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.09 0.43 6.44 -2.39 -0.02 0.42 16 36 H 0.09 0.41 8.07 -2.38 -0.02 0.39 16 37 H 0.13 1.26 8.07 -2.39 -0.02 1.24 16 38 H 0.06 1.67 7.42 -2.39 -0.02 1.65 16 39 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.05 1.16 7.45 -2.39 -0.02 1.14 16 41 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.34 14.27 4.17 -89.69 -0.37 13.90 16 43 H 0.10 3.63 7.43 -2.39 -0.02 3.61 16 44 H 0.06 2.15 8.05 -2.39 -0.02 2.13 16 45 H 0.40 20.93 7.90 -92.71 -0.73 20.20 16 46 H 0.28 14.63 8.31 -92.70 -0.77 13.85 16 Total: -1.00 -103.10 389.28 -0.87 -103.98 By element: Atomic # 1 Polarization: 39.79 SS G_CDS: -0.08 Total: 39.72 kcal Atomic # 6 Polarization: 28.79 SS G_CDS: 7.83 Total: 36.62 kcal Atomic # 7 Polarization: -148.64 SS G_CDS: -10.52 Total: -159.17 kcal Atomic # 8 Polarization: -69.64 SS G_CDS: -0.13 Total: -69.77 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -103.10 -0.87 -103.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331440400.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.316 kcal (2) G-P(sol) polarization free energy of solvation -103.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds