Wall clock time and date at job start Tue Mar 31 2020 22:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34755 * 116.99858 * 2 1 4 4 O 1.21518 * 119.99815 * 359.97438 * 3 2 1 5 5 C 1.47378 * 119.99809 * 180.02562 * 3 2 1 6 6 C 1.36669 * 125.78020 * 180.02562 * 5 3 2 7 7 N 1.34784 * 106.83742 * 179.73052 * 6 5 3 8 8 C 1.46501 * 126.58666 * 180.25974 * 7 6 5 9 9 C 1.53001 * 109.46887 * 125.00579 * 8 7 6 10 10 N 1.46501 * 109.46887 * 179.97438 * 9 8 7 11 11 C 1.34782 * 119.99810 * 179.97438 * 10 9 8 12 12 O 1.21585 * 120.00144 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99910 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99868 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.46872 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.47097 * 299.99907 * 15 14 13 17 17 C 1.52998 * 109.46915 * 59.99923 * 15 14 13 18 18 C 1.50701 * 109.47124 * 179.97438 * 15 14 13 19 19 H 1.08002 * 119.99740 * 0.02562 * 18 15 14 20 20 C 1.37873 * 120.00188 * 179.97438 * 18 15 14 21 21 N 1.31514 * 119.99687 * 0.02562 * 20 18 15 22 22 Si 1.86801 * 120.00065 * 180.02562 * 20 18 15 23 23 H 1.48492 * 109.47320 * 90.00091 * 22 20 18 24 24 H 1.48504 * 109.46980 * 210.00173 * 22 20 18 25 25 H 1.48501 * 109.46930 * 330.00000 * 22 20 18 26 26 N 1.40210 * 106.82726 * 0.26571 * 7 6 5 27 27 N 1.28756 * 108.38353 * 359.97438 * 26 7 6 28 28 H 1.09002 * 109.46608 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46926 * 299.99467 * 1 2 3 30 30 H 1.08993 * 109.47352 * 59.99998 * 1 2 3 31 31 H 1.08002 * 126.58419 * 359.97438 * 6 5 3 32 32 H 1.08994 * 109.47030 * 245.00335 * 8 7 6 33 33 H 1.09000 * 109.47310 * 5.00335 * 8 7 6 34 34 H 1.09007 * 109.47021 * 300.00036 * 9 8 7 35 35 H 1.09000 * 109.47344 * 59.99777 * 9 8 7 36 36 H 0.97005 * 120.00163 * 0.02562 * 10 9 8 37 37 H 0.97005 * 120.00064 * 0.02562 * 13 11 10 38 38 H 1.08998 * 109.47171 * 299.99425 * 14 13 11 39 39 H 1.08997 * 109.47197 * 60.00240 * 14 13 11 40 40 H 1.09000 * 109.47501 * 60.00461 * 16 15 14 41 41 H 1.09003 * 109.46821 * 180.02562 * 16 15 14 42 42 H 1.08997 * 109.47625 * 299.99846 * 16 15 14 43 43 H 1.09007 * 109.47210 * 60.00320 * 17 15 14 44 44 H 1.09003 * 109.46938 * 179.97438 * 17 15 14 45 45 H 1.08993 * 109.47556 * 299.99718 * 17 15 14 46 46 H 0.97000 * 119.99788 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4019 2.2198 -0.0005 5 6 3.5356 1.2778 -0.0006 6 6 4.2755 2.4269 -0.0001 7 7 5.5715 2.0566 0.0051 8 6 6.7342 2.9479 0.0129 9 6 7.6367 2.5984 1.1979 10 7 8.7997 3.4892 1.2053 11 6 9.7372 3.3656 2.1659 12 8 9.6173 2.5152 3.0264 13 7 10.8068 4.1855 2.1730 14 6 11.8260 4.0508 3.2167 15 6 12.9238 5.0933 2.9951 16 6 13.5660 4.8741 1.6239 17 6 12.3148 6.4956 3.0548 18 6 13.9719 4.9552 4.0691 19 1 13.8659 4.1992 4.8330 20 6 15.0666 5.7933 4.0758 21 7 15.1959 6.7136 3.1453 22 14 16.3662 5.6216 5.4067 23 1 17.4114 4.6671 4.9578 24 1 16.9848 6.9461 5.6683 25 1 15.7354 5.1152 6.6521 26 7 5.5932 0.6547 0.0017 27 7 4.3777 0.2298 -0.0047 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 3.8949 3.4376 0.0003 32 1 7.2912 2.8265 -0.9161 33 1 6.3994 3.9812 0.1035 34 1 7.0797 2.7197 2.1270 35 1 7.9716 1.5651 1.1074 36 1 8.8948 4.1685 0.5194 37 1 10.9019 4.8648 1.4870 38 1 11.3684 4.2066 4.1936 39 1 12.2601 3.0519 3.1738 40 1 12.8077 4.9744 0.8473 41 1 14.3483 5.6166 1.4662 42 1 13.9998 3.8751 1.5813 43 1 11.8573 6.6518 4.0318 44 1 13.0969 7.2384 2.8974 45 1 11.5565 6.5959 2.2783 46 1 15.9659 7.3035 3.1502 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364264417.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:05 Heat of formation + Delta-G solvation = -14.745171 kcal Electronic energy + Delta-G solvation = -28097.306790 eV Core-core repulsion = 23832.050357 eV Total energy + Delta-G solvation = -4265.256433 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.76111 -40.52875 -39.77944 -36.92706 -36.86714 -36.05741 -34.08997 -33.31431 -31.74291 -30.98597 -29.63927 -28.09336 -25.77144 -25.75674 -25.17405 -24.38409 -23.98381 -22.35050 -21.21293 -20.85819 -18.94600 -18.79715 -18.05042 -17.48359 -17.10880 -16.82028 -16.47926 -15.86890 -15.75564 -15.58124 -15.15279 -14.74383 -14.61600 -14.30623 -14.09950 -13.68231 -13.66031 -13.12657 -13.01719 -12.90322 -12.71301 -12.43637 -12.23282 -12.20520 -11.67483 -11.42117 -11.23687 -11.23382 -11.18074 -10.92951 -10.89435 -10.71667 -10.42973 -10.25072 -9.96304 -9.88070 -9.67861 -9.36576 -9.24994 -8.83285 -8.46332 -8.30485 -6.05398 -4.15274 0.51639 1.07051 1.32099 2.21422 2.54842 2.89071 3.26656 3.33783 3.38144 3.47960 3.68924 3.75110 4.09996 4.17342 4.35240 4.35998 4.49015 4.60210 4.68808 4.74645 4.77599 5.03343 5.18583 5.21760 5.33709 5.46340 5.75104 5.83016 6.13122 6.30759 6.30957 6.45385 6.72958 6.77107 6.82310 6.98274 6.99724 7.13668 7.15038 7.33330 7.51041 7.51400 7.66672 7.97091 8.07965 8.29852 8.36836 8.83304 8.89515 9.50780 10.96074 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.040095 B = 0.001499 C = 0.001488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.165847 B =18671.164060 C =18813.533240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.339 6.339 3 C 0.560 3.440 4 O -0.506 6.506 5 C -0.095 4.095 6 C 0.110 3.890 7 N -0.354 5.354 8 C 0.110 3.890 9 C 0.130 3.870 10 N -0.754 5.754 11 C 0.700 3.300 12 O -0.593 6.593 13 N -0.730 5.730 14 C 0.150 3.850 15 C 0.055 3.945 16 C -0.129 4.129 17 C -0.129 4.129 18 C -0.506 4.506 19 H 0.058 0.942 20 C 0.067 3.933 21 N -0.886 5.886 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 N -0.047 5.047 27 N -0.181 5.181 28 H 0.105 0.895 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.211 0.789 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.396 0.604 37 H 0.394 0.606 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.005 0.995 41 H 0.085 0.915 42 H 0.027 0.973 43 H 0.026 0.974 44 H 0.085 0.915 45 H 0.005 0.995 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.378 -4.827 -11.438 27.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.254 6.254 3 C 0.403 3.597 4 O -0.393 6.393 5 C -0.232 4.232 6 C -0.047 4.047 7 N -0.137 5.137 8 C -0.012 4.012 9 C 0.004 3.996 10 N -0.413 5.413 11 C 0.400 3.600 12 O -0.471 6.471 13 N -0.384 5.384 14 C 0.027 3.973 15 C 0.054 3.946 16 C -0.187 4.187 17 C -0.187 4.187 18 C -0.544 4.544 19 H 0.076 0.924 20 C -0.135 4.135 21 N -0.525 5.525 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 N -0.028 5.028 27 N -0.056 5.056 28 H 0.124 0.876 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.228 0.772 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.229 0.771 37 H 0.229 0.771 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.024 0.976 41 H 0.104 0.896 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.104 0.896 45 H 0.024 0.976 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -23.636 -6.394 -10.652 26.702 hybrid contribution 0.108 1.636 0.023 1.640 sum -23.528 -4.758 -10.629 26.253 Atomic orbital electron populations 1.23368 0.75473 1.04164 1.02760 1.86651 1.23662 1.31486 1.83632 1.19390 0.86083 0.81898 0.72373 1.90892 1.65679 1.35967 1.46740 1.20199 0.92644 0.89784 1.20532 1.23375 0.83442 1.01429 0.96469 1.50384 1.06184 1.08244 1.48907 1.22254 0.84482 0.92388 1.02056 1.21183 0.86055 0.95819 0.96539 1.44833 1.24039 1.39827 1.32574 1.15967 0.80002 0.82394 0.81655 1.90922 1.78657 1.38028 1.39525 1.45507 1.22797 1.36777 1.33327 1.21627 0.87189 1.00417 0.88065 1.18385 0.90996 0.90397 0.94823 1.21816 1.00220 1.01128 0.95535 1.21815 0.98851 1.01064 0.96948 1.20977 1.05160 1.17317 1.10962 0.92384 1.24870 0.97793 0.94991 0.95815 1.69799 1.29480 1.19894 1.33322 0.86569 0.81730 0.77325 0.82245 1.20697 1.21273 1.19883 1.82204 1.13313 0.85860 1.21403 1.74833 0.96634 1.25627 1.08486 0.87649 0.91575 0.91615 0.77232 0.87067 0.86605 0.90806 0.89739 0.77070 0.77097 0.92840 0.92813 0.97600 0.89634 0.95421 0.95441 0.89634 0.97613 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.57 101.05 1.07 1.26 16 2 O -0.34 -3.16 10.57 -40.64 -0.43 -3.59 16 3 C 0.56 5.53 7.96 34.45 0.27 5.81 16 4 O -0.51 -5.46 16.65 -19.28 -0.32 -5.78 16 5 C -0.09 -0.92 7.02 -83.57 -0.59 -1.50 16 6 C 0.11 0.73 11.27 -16.82 -0.19 0.54 16 7 N -0.35 -2.63 3.69 -61.05 -0.23 -2.86 16 8 C 0.11 0.52 6.65 -4.04 -0.03 0.49 16 9 C 0.13 1.17 5.88 -4.04 -0.02 1.15 16 10 N -0.75 -7.75 5.56 -65.22 -0.36 -8.12 16 11 C 0.70 11.34 8.57 -86.92 -0.74 10.60 16 12 O -0.59 -12.35 16.34 5.29 0.09 -12.26 16 13 N -0.73 -12.08 4.96 -65.22 -0.32 -12.40 16 14 C 0.15 3.08 4.50 -4.04 -0.02 3.07 16 15 C 0.05 1.23 0.50 -155.66 -0.08 1.15 16 16 C -0.13 -2.80 8.08 37.16 0.30 -2.50 16 17 C -0.13 -2.78 8.08 37.16 0.30 -2.48 16 18 C -0.51 -12.97 8.01 -34.44 -0.28 -13.24 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 20 C 0.07 1.72 5.15 -17.82 -0.09 1.62 16 21 N -0.89 -23.08 9.35 55.43 0.52 -22.56 16 22 Si 0.89 20.43 29.54 -169.99 -5.02 15.40 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 N -0.05 -0.52 13.64 60.35 0.82 0.31 16 27 N -0.18 -2.12 12.39 32.83 0.41 -1.71 16 28 H 0.11 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.21 0.59 8.06 -52.49 -0.42 0.17 16 32 H 0.11 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.12 0.17 8.08 -51.93 -0.42 -0.25 16 34 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.40 2.63 8.49 -40.82 -0.35 2.29 16 37 H 0.39 5.66 6.18 -40.82 -0.25 5.41 16 38 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.01 0.09 6.86 -51.93 -0.36 -0.26 16 41 H 0.08 2.06 6.07 -51.93 -0.32 1.75 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 2.06 6.07 -51.93 -0.32 1.74 16 45 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 46 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 LS Contribution 390.39 15.07 5.88 5.88 Total: -1.00 -33.90 390.39 -5.61 -39.51 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.55 Total: 2.21 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -0.09 Total: 5.97 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.84 Total: -47.35 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.66 Total: -21.63 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.90 -5.61 -39.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364264417.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.761 kcal (2) G-P(sol) polarization free energy of solvation -33.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds