Wall clock time and date at job start Tue Mar 31 2020 22:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34755 * 116.99858 * 2 1 4 4 O 1.21518 * 119.99815 * 359.97438 * 3 2 1 5 5 C 1.47378 * 119.99809 * 180.02562 * 3 2 1 6 6 C 1.36669 * 125.78020 * 180.02562 * 5 3 2 7 7 N 1.34784 * 106.83742 * 179.73052 * 6 5 3 8 8 C 1.46501 * 126.58666 * 180.25974 * 7 6 5 9 9 C 1.53001 * 109.46887 * 125.00579 * 8 7 6 10 10 N 1.46501 * 109.46887 * 179.97438 * 9 8 7 11 11 C 1.34782 * 119.99810 * 179.97438 * 10 9 8 12 12 O 1.21585 * 120.00144 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99910 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99868 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.46872 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.47097 * 299.99907 * 15 14 13 17 17 C 1.52998 * 109.46915 * 59.99923 * 15 14 13 18 18 C 1.50701 * 109.47124 * 179.97438 * 15 14 13 19 19 H 1.08002 * 119.99740 * 0.02562 * 18 15 14 20 20 C 1.37873 * 120.00188 * 179.97438 * 18 15 14 21 21 N 1.31514 * 119.99687 * 0.02562 * 20 18 15 22 22 Si 1.86801 * 120.00065 * 180.02562 * 20 18 15 23 23 H 1.48492 * 109.47320 * 90.00091 * 22 20 18 24 24 H 1.48504 * 109.46980 * 210.00173 * 22 20 18 25 25 H 1.48501 * 109.46930 * 330.00000 * 22 20 18 26 26 N 1.40210 * 106.82726 * 0.26571 * 7 6 5 27 27 N 1.28756 * 108.38353 * 359.97438 * 26 7 6 28 28 H 1.09002 * 109.46608 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46926 * 299.99467 * 1 2 3 30 30 H 1.08993 * 109.47352 * 59.99998 * 1 2 3 31 31 H 1.08002 * 126.58419 * 359.97438 * 6 5 3 32 32 H 1.08994 * 109.47030 * 245.00335 * 8 7 6 33 33 H 1.09000 * 109.47310 * 5.00335 * 8 7 6 34 34 H 1.09007 * 109.47021 * 300.00036 * 9 8 7 35 35 H 1.09000 * 109.47344 * 59.99777 * 9 8 7 36 36 H 0.97005 * 120.00163 * 0.02562 * 10 9 8 37 37 H 0.97005 * 120.00064 * 0.02562 * 13 11 10 38 38 H 1.08998 * 109.47171 * 299.99425 * 14 13 11 39 39 H 1.08997 * 109.47197 * 60.00240 * 14 13 11 40 40 H 1.09000 * 109.47501 * 60.00461 * 16 15 14 41 41 H 1.09003 * 109.46821 * 180.02562 * 16 15 14 42 42 H 1.08997 * 109.47625 * 299.99846 * 16 15 14 43 43 H 1.09007 * 109.47210 * 60.00320 * 17 15 14 44 44 H 1.09003 * 109.46938 * 179.97438 * 17 15 14 45 45 H 1.08993 * 109.47556 * 299.99718 * 17 15 14 46 46 H 0.97000 * 119.99788 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4019 2.2198 -0.0005 5 6 3.5356 1.2778 -0.0006 6 6 4.2755 2.4269 -0.0001 7 7 5.5715 2.0566 0.0051 8 6 6.7342 2.9479 0.0129 9 6 7.6367 2.5984 1.1979 10 7 8.7997 3.4892 1.2053 11 6 9.7372 3.3656 2.1659 12 8 9.6173 2.5152 3.0264 13 7 10.8068 4.1855 2.1730 14 6 11.8260 4.0508 3.2167 15 6 12.9238 5.0933 2.9951 16 6 13.5660 4.8741 1.6239 17 6 12.3148 6.4956 3.0548 18 6 13.9719 4.9552 4.0691 19 1 13.8659 4.1992 4.8330 20 6 15.0666 5.7933 4.0758 21 7 15.1959 6.7136 3.1453 22 14 16.3662 5.6216 5.4067 23 1 17.4114 4.6671 4.9578 24 1 16.9848 6.9461 5.6683 25 1 15.7354 5.1152 6.6521 26 7 5.5932 0.6547 0.0017 27 7 4.3777 0.2298 -0.0047 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 3.8949 3.4376 0.0003 32 1 7.2912 2.8265 -0.9161 33 1 6.3994 3.9812 0.1035 34 1 7.0797 2.7197 2.1270 35 1 7.9716 1.5651 1.1074 36 1 8.8948 4.1685 0.5194 37 1 10.9019 4.8648 1.4870 38 1 11.3684 4.2066 4.1936 39 1 12.2601 3.0519 3.1738 40 1 12.8077 4.9744 0.8473 41 1 14.3483 5.6166 1.4662 42 1 13.9998 3.8751 1.5813 43 1 11.8573 6.6518 4.0318 44 1 13.0969 7.2384 2.8974 45 1 11.5565 6.5959 2.2783 46 1 15.9659 7.3035 3.1502 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364264417.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:05 Heat of formation + Delta-G solvation = -40.074621 kcal Electronic energy + Delta-G solvation = -28098.405157 eV Core-core repulsion = 23832.050357 eV Total energy + Delta-G solvation = -4266.354801 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.39974 -41.21570 -41.06054 -38.35507 -37.56596 -37.07426 -35.12105 -34.85515 -32.74205 -32.33937 -30.45311 -28.61662 -27.52409 -27.42719 -26.73071 -25.12183 -24.91320 -22.95602 -22.12031 -21.87224 -20.57664 -19.88091 -18.97795 -18.14078 -17.82753 -17.75735 -17.49217 -17.17403 -16.79493 -16.56448 -16.54327 -15.78208 -15.57864 -15.42043 -15.12098 -14.81032 -14.67544 -14.51148 -14.25786 -13.97221 -13.69061 -13.45004 -13.19066 -13.07477 -12.98094 -12.89687 -12.65923 -12.58484 -12.27563 -12.21286 -12.12475 -11.88637 -11.82140 -11.54421 -11.45453 -11.43701 -11.14154 -10.68135 -10.54522 -10.42555 -10.34195 -9.70588 -8.01081 -6.16007 -0.04409 0.33394 0.78211 1.43112 1.46567 1.54111 1.62360 1.84120 1.87112 2.17700 2.47323 3.07878 3.21518 3.22922 3.45395 3.62992 3.76535 3.78600 4.09259 4.21590 4.29778 4.37222 4.43744 4.45705 4.55818 4.68125 4.73684 4.75329 4.77735 5.02497 5.09638 5.12850 5.20229 5.22689 5.23667 5.38798 5.41504 5.63790 5.69619 5.70884 6.04943 6.19506 6.25036 6.46272 6.47522 6.84037 6.88209 7.15803 7.51673 7.61685 8.97634 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.040095 B = 0.001499 C = 0.001488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.165847 B =18671.164060 C =18813.533240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.561 3.439 4 O -0.520 6.520 5 C -0.120 4.120 6 C 0.137 3.863 7 N -0.348 5.348 8 C 0.115 3.885 9 C 0.131 3.869 10 N -0.726 5.726 11 C 0.698 3.302 12 O -0.643 6.643 13 N -0.722 5.722 14 C 0.168 3.832 15 C 0.049 3.951 16 C -0.119 4.119 17 C -0.118 4.118 18 C -0.528 4.528 19 H 0.042 0.958 20 C 0.031 3.969 21 N -0.897 5.897 22 Si 0.942 3.058 23 H -0.280 1.280 24 H -0.282 1.282 25 H -0.277 1.277 26 N -0.084 5.084 27 N -0.210 5.210 28 H 0.129 0.871 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.255 0.745 32 H 0.134 0.866 33 H 0.164 0.836 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.419 0.581 37 H 0.408 0.592 38 H 0.034 0.966 39 H 0.033 0.967 40 H 0.041 0.959 41 H 0.061 0.939 42 H 0.015 0.985 43 H 0.016 0.984 44 H 0.061 0.939 45 H 0.041 0.959 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.700 -3.255 -13.023 28.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.404 3.596 4 O -0.408 6.408 5 C -0.257 4.257 6 C -0.021 4.021 7 N -0.131 5.131 8 C -0.005 4.005 9 C 0.005 3.995 10 N -0.385 5.385 11 C 0.398 3.602 12 O -0.525 6.525 13 N -0.377 5.377 14 C 0.043 3.957 15 C 0.048 3.952 16 C -0.176 4.176 17 C -0.176 4.176 18 C -0.567 4.567 19 H 0.061 0.939 20 C -0.169 4.169 21 N -0.536 5.536 22 Si 0.769 3.231 23 H -0.206 1.206 24 H -0.208 1.208 25 H -0.202 1.202 26 N -0.065 5.065 27 N -0.084 5.084 28 H 0.147 0.853 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.270 0.730 32 H 0.152 0.848 33 H 0.182 0.818 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.257 0.743 37 H 0.246 0.754 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.035 0.965 43 H 0.036 0.964 44 H 0.080 0.920 45 H 0.060 0.940 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -24.972 -4.804 -12.305 28.251 hybrid contribution 0.454 1.138 0.509 1.326 sum -24.519 -3.667 -11.795 27.454 Atomic orbital electron populations 1.23658 0.73644 1.05958 1.03147 1.86640 1.25628 1.31487 1.83384 1.19473 0.86281 0.81868 0.71944 1.90870 1.66003 1.36226 1.47739 1.20511 0.92696 0.90588 1.21940 1.24021 0.82455 1.02246 0.93388 1.50519 1.07255 1.07369 1.47954 1.22488 0.83383 0.93901 1.00691 1.21159 0.85867 0.94257 0.98216 1.44464 1.22754 1.39969 1.31290 1.16121 0.80479 0.81539 0.82081 1.90899 1.79735 1.39996 1.41874 1.45139 1.22319 1.37465 1.32825 1.21107 0.87440 0.98653 0.88460 1.18393 0.90936 0.91443 0.94381 1.21647 1.00375 0.99544 0.96065 1.21641 0.98829 0.99469 0.97646 1.21274 1.06580 1.17109 1.11753 0.93921 1.25396 0.99192 0.94975 0.97379 1.69895 1.29722 1.20034 1.33960 0.85815 0.79824 0.77260 0.80230 1.20609 1.20802 1.20229 1.82137 1.13223 0.88067 1.23058 1.74798 0.97255 1.27107 1.09284 0.85271 0.91323 0.91078 0.72951 0.84781 0.81813 0.92213 0.92448 0.74281 0.75431 0.94708 0.94834 0.94058 0.92006 0.96549 0.96438 0.92031 0.94013 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.57 113.37 1.20 1.49 16 2 O -0.36 -6.56 10.57 -56.66 -0.60 -7.15 16 3 C 0.56 10.71 7.96 70.23 0.56 11.27 16 4 O -0.52 -10.58 16.65 19.78 0.33 -10.25 16 5 C -0.12 -2.20 7.02 40.78 0.29 -1.91 16 6 C 0.14 1.41 11.27 83.87 0.95 2.36 16 7 N -0.35 -4.27 3.69 -347.06 -1.28 -5.55 16 8 C 0.12 0.61 6.65 86.38 0.57 1.19 16 9 C 0.13 2.09 5.88 86.38 0.51 2.60 16 10 N -0.73 -12.78 5.56 -478.52 -2.66 -15.44 16 11 C 0.70 21.60 8.57 179.05 1.53 23.13 16 12 O -0.64 -26.90 16.34 -3.98 -0.07 -26.97 16 13 N -0.72 -22.56 4.96 -478.53 -2.37 -24.94 16 14 C 0.17 6.90 4.50 86.38 0.39 7.29 16 15 C 0.05 2.18 0.50 -52.93 -0.03 2.16 16 16 C -0.12 -5.00 8.08 71.98 0.58 -4.41 16 17 C -0.12 -4.94 8.08 71.98 0.58 -4.36 16 18 C -0.53 -27.43 8.01 25.60 0.21 -27.23 16 19 H 0.04 2.28 7.74 -2.91 -0.02 2.26 16 20 C 0.03 1.57 5.15 84.65 0.44 2.01 16 21 N -0.90 -46.62 9.35 21.45 0.20 -46.42 16 22 Si 0.94 42.05 29.54 68.60 2.03 44.08 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 26 N -0.08 -1.82 13.64 37.02 0.51 -1.32 16 27 N -0.21 -4.93 12.39 -50.04 -0.62 -5.55 16 28 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.25 0.16 8.06 -2.91 -0.02 0.13 16 32 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.16 -0.59 8.08 -2.39 -0.02 -0.61 16 34 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.42 3.61 8.49 -92.70 -0.79 2.83 16 37 H 0.41 10.30 6.18 -92.70 -0.57 9.73 16 38 H 0.03 1.54 8.14 -2.39 -0.02 1.53 16 39 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 41 H 0.06 2.93 6.07 -2.39 -0.01 2.92 16 42 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 44 H 0.06 2.90 6.07 -2.39 -0.01 2.89 16 45 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 46 H 0.26 13.04 8.31 -92.71 -0.77 12.27 16 Total: -1.00 -77.88 390.39 2.90 -74.98 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -0.33 Total: 8.95 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 7.77 Total: 15.58 kcal Atomic # 7 Polarization: -92.99 SS G_CDS: -6.23 Total: -99.22 kcal Atomic # 8 Polarization: -44.04 SS G_CDS: -0.33 Total: -44.37 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -77.88 2.90 -74.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364264417.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.906 kcal (2) G-P(sol) polarization free energy of solvation -77.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds