Wall clock time and date at job start Tue Mar 31 2020 23:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.19280 * 2 1 4 4 C 1.53595 * 109.19615 * 119.33631 * 2 1 3 5 5 C 1.51482 * 107.47461 * 201.98111 * 4 2 1 6 6 N 1.30300 * 127.60926 * 114.93277 * 5 4 2 7 7 N 1.40358 * 108.08345 * 180.80025 * 6 5 4 8 8 H 0.97000 * 126.00968 * 179.77628 * 7 6 5 9 9 C 1.35317 * 107.98761 * 359.79630 * 7 6 5 10 10 C 1.34285 * 107.36990 * 359.74023 * 9 7 6 11 11 C 1.51924 * 128.41147 * 181.76603 * 10 9 7 12 12 N 1.47323 * 106.76386 * 240.12061 * 11 10 9 13 13 C 1.34770 * 119.48595 * 101.87303 * 12 11 10 14 14 O 1.21283 * 120.00361 * 180.02562 * 13 12 11 15 15 C 1.50702 * 119.99695 * 359.97438 * 13 12 11 16 16 C 1.50701 * 109.47282 * 180.02562 * 15 13 12 17 17 C 1.37641 * 120.12829 * 265.00180 * 16 15 13 18 18 C 1.38613 * 120.24972 * 180.02562 * 17 16 15 19 19 C 1.38660 * 120.49904 * 359.97438 * 18 17 16 20 20 C 1.37593 * 120.24924 * 0.02562 * 19 18 17 21 21 C 1.40699 * 120.12658 * 84.72671 * 16 15 13 22 22 C 1.41388 * 120.24457 * 359.97438 * 21 16 15 23 23 H 1.08004 * 120.00229 * 329.70089 * 22 21 16 24 24 C 1.39943 * 120.00293 * 149.69703 * 22 21 16 25 25 N 1.30826 * 120.00559 * 162.01813 * 24 22 21 26 26 Si 1.86805 * 119.99872 * 342.02176 * 24 22 21 27 27 H 1.48495 * 109.47259 * 95.39592 * 26 24 22 28 28 H 1.48501 * 109.47229 * 215.39736 * 26 24 22 29 29 H 1.48501 * 109.46979 * 335.39865 * 26 24 22 30 30 C 1.45010 * 121.03856 * 281.86953 * 12 11 10 31 31 H 1.09002 * 109.47401 * 300.66437 * 1 2 3 32 32 H 1.09004 * 109.47253 * 180.66235 * 1 2 3 33 33 H 1.09001 * 109.47350 * 60.66011 * 1 2 3 34 34 H 1.08999 * 109.86029 * 321.47282 * 4 2 1 35 35 H 1.08998 * 109.85428 * 82.42274 * 4 2 1 36 36 H 1.08003 * 126.31308 * 179.75897 * 9 7 6 37 37 H 1.09008 * 109.98842 * 359.42895 * 11 10 9 38 38 H 1.08996 * 109.99599 * 120.70475 * 11 10 9 39 39 H 1.09000 * 109.47421 * 300.00582 * 15 13 12 40 40 H 1.09002 * 109.47000 * 60.00619 * 15 13 12 41 41 H 1.08001 * 119.87647 * 359.97438 * 17 16 15 42 42 H 1.07994 * 119.75267 * 179.97438 * 18 17 16 43 43 H 1.07998 * 119.87781 * 179.97438 * 19 18 17 44 44 H 1.08007 * 120.12928 * 179.97438 * 20 19 18 45 45 H 0.97001 * 120.00171 * 180.02562 * 25 24 22 46 46 H 1.08996 * 108.36806 * 308.03525 * 30 12 11 47 47 H 1.09001 * 108.36842 * 190.91717 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8883 1.0294 0.0000 4 6 2.0350 -0.7107 1.2645 5 6 3.4499 -0.2338 1.5199 6 7 3.8839 0.4625 2.5322 7 7 5.2561 0.6920 2.3469 8 1 5.8374 1.1870 2.9451 9 6 5.6256 0.1016 1.1867 10 6 4.5325 -0.4801 0.6670 11 6 4.4153 -1.3025 -0.6050 12 7 3.4565 -0.6022 -1.4770 13 6 3.9141 0.1408 -2.5041 14 8 3.1331 0.7217 -3.2277 15 6 5.3964 0.2506 -2.7529 16 6 5.6408 1.1323 -3.9504 17 6 5.8065 0.5737 -5.1974 18 6 6.0320 1.3822 -6.3004 19 6 6.0929 2.7606 -6.1619 20 6 5.9301 3.3408 -4.9250 21 6 5.6948 2.5301 -3.7989 22 6 5.5197 3.1155 -2.5239 23 1 4.8937 2.6316 -1.7888 24 6 6.1577 4.3220 -2.2142 25 7 5.7412 5.0419 -1.2044 26 14 7.6040 4.9046 -3.2430 27 1 7.1225 5.8461 -4.2855 28 1 8.5871 5.5941 -2.3693 29 1 8.2521 3.7367 -3.8920 30 6 2.0280 -0.6996 -1.2477 31 1 -0.3634 0.5241 0.8840 32 1 -0.3634 -1.0276 0.0119 33 1 -0.3634 0.5035 -0.8958 34 1 1.3993 -0.4545 2.1121 35 1 2.0290 -1.7897 1.1102 36 1 6.6169 0.0985 0.7580 37 1 5.3861 -1.3692 -1.0963 38 1 4.0474 -2.3013 -0.3704 39 1 5.8806 0.6843 -1.8779 40 1 5.8076 -0.7411 -2.9416 41 1 5.7615 -0.4988 -5.3167 42 1 6.1614 0.9354 -7.2750 43 1 6.2695 3.3810 -7.0281 44 1 5.9782 4.4146 -4.8193 45 1 6.1832 5.8784 -0.9901 46 1 1.7622 -1.7545 -1.1794 47 1 1.5121 -0.2749 -2.1089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001419504103.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:08 Heat of formation + Delta-G solvation = 54.312410 kcal Electronic energy + Delta-G solvation = -30365.163726 eV Core-core repulsion = 26513.751117 eV Total energy + Delta-G solvation = -3851.412609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.32895 -39.46505 -37.78199 -36.48438 -34.33227 -33.54712 -32.00862 -31.64113 -30.44132 -30.27749 -27.66661 -27.09971 -26.10865 -25.19212 -24.38818 -21.41244 -21.08962 -20.80222 -19.86443 -19.23553 -18.59472 -17.64205 -17.28790 -16.45040 -16.00746 -15.49105 -15.07692 -14.63238 -14.51640 -14.27198 -14.21788 -13.96690 -13.67990 -13.14365 -13.06666 -12.87514 -12.79703 -12.63504 -12.32105 -12.13847 -12.04619 -11.85227 -11.56683 -11.40476 -11.32124 -11.10322 -10.94705 -10.77419 -10.70649 -10.60128 -10.35512 -10.20928 -9.67362 -9.50140 -9.25109 -9.10913 -9.08619 -8.50617 -8.18931 -7.55007 -7.45042 -6.89431 -4.42922 2.05410 2.59857 2.75204 2.79041 2.99219 3.13932 3.21143 3.33154 3.37470 3.63739 4.00836 4.55070 4.60405 4.84649 4.91220 4.96283 5.21645 5.25701 5.30419 5.44674 5.51019 5.56284 5.65220 5.66021 5.71783 5.72890 5.88877 5.92496 6.02997 6.05205 6.12817 6.15629 6.21797 6.22680 6.26259 6.32434 6.46617 6.62922 6.73666 6.76635 6.99662 7.02867 7.25240 7.41894 7.47548 7.70994 7.78182 7.80934 7.88293 7.97108 8.19558 8.41881 8.73849 8.87257 8.90524 10.12502 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011473 B = 0.004616 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.965222 B = 6065.023476 C = 7208.183702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 H 0.078 0.922 4 C -0.031 4.031 5 C 0.090 3.910 6 N -0.293 5.293 7 N -0.483 5.483 8 H 0.438 0.562 9 C 0.085 3.915 10 C -0.260 4.260 11 C 0.191 3.809 12 N -0.614 5.614 13 C 0.519 3.481 14 O -0.521 6.521 15 C -0.071 4.071 16 C -0.166 4.166 17 C -0.070 4.070 18 C -0.242 4.242 19 C -0.081 4.081 20 C -0.234 4.234 21 C 0.110 3.890 22 C -0.441 4.441 23 H 0.088 0.912 24 C 0.085 3.915 25 N -0.810 5.810 26 Si 0.908 3.092 27 H -0.272 1.272 28 H -0.294 1.294 29 H -0.244 1.244 30 C 0.118 3.882 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.178 0.822 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.282 0.718 46 H 0.058 0.942 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.163 -12.892 6.349 14.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 H 0.096 0.904 4 C -0.070 4.070 5 C -0.079 4.079 6 N -0.115 5.115 7 N -0.190 5.190 8 H 0.282 0.718 9 C -0.062 4.062 10 C -0.273 4.273 11 C 0.067 3.933 12 N -0.348 5.348 13 C 0.309 3.691 14 O -0.395 6.395 15 C -0.111 4.111 16 C -0.167 4.167 17 C -0.088 4.088 18 C -0.261 4.261 19 C -0.099 4.099 20 C -0.253 4.253 21 C 0.107 3.893 22 C -0.470 4.470 23 H 0.106 0.894 24 C -0.133 4.133 25 N -0.435 5.435 26 Si 0.735 3.265 27 H -0.198 1.198 28 H -0.221 1.221 29 H -0.167 1.167 30 C -0.005 4.005 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.195 0.805 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.116 0.884 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.115 0.885 45 H 0.092 0.908 46 H 0.076 0.924 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.908 -11.808 7.233 13.978 hybrid contribution 1.249 0.617 -0.630 1.529 sum -0.658 -11.191 6.603 13.011 Atomic orbital electron populations 1.21767 0.94077 1.01761 1.02324 1.21284 0.95846 1.01248 0.93977 0.90397 1.20396 0.88652 0.99743 0.98214 1.22316 0.96727 0.96683 0.92124 1.77067 0.89896 1.21037 1.23468 1.46344 1.07834 1.45233 1.19582 0.71837 1.22085 1.00209 0.95461 0.88458 1.20439 0.92926 1.11880 1.02040 1.20185 0.93722 0.93182 0.86248 1.47807 1.05926 1.50882 1.30226 1.21111 0.91957 0.76904 0.79173 1.90669 1.58290 1.43641 1.46871 1.20316 0.91709 0.99231 0.99832 1.19111 1.12006 0.93092 0.92525 1.20427 0.98528 0.97192 0.92639 1.20324 1.15230 0.93514 0.97033 1.20589 0.98692 0.94584 0.96047 1.20990 1.13202 0.97976 0.93102 1.17477 0.88238 0.90732 0.92869 1.19398 1.25354 1.03682 0.98554 0.89365 1.26147 0.97899 0.94656 0.94628 1.69731 1.36403 1.11303 1.26033 0.86378 0.80824 0.80161 0.79173 1.19791 1.22131 1.16683 1.20670 0.81956 0.99585 0.98316 0.92349 0.92523 0.92102 0.90303 0.89893 0.80512 0.88988 0.90172 0.88411 0.90462 0.89104 0.89055 0.89090 0.88453 0.90754 0.92406 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.01 37.16 0.33 -1.18 16 2 C -0.10 -1.37 2.63 -91.09 -0.24 -1.61 16 3 H 0.08 1.36 7.89 -51.93 -0.41 0.95 16 4 C -0.03 -0.36 5.34 -27.19 -0.15 -0.51 16 5 C 0.09 1.31 6.40 -82.20 -0.53 0.79 16 6 N -0.29 -4.59 12.69 33.82 0.43 -4.16 16 7 N -0.48 -6.45 7.38 30.32 0.22 -6.23 16 8 H 0.44 4.57 8.96 -182.40 -1.64 2.94 16 9 C 0.09 1.09 11.97 -17.41 -0.21 0.89 16 10 C -0.26 -3.56 5.62 -104.75 -0.59 -4.14 16 11 C 0.19 2.29 6.03 -4.14 -0.02 2.27 16 12 N -0.61 -9.50 2.66 -175.77 -0.47 -9.97 16 13 C 0.52 10.26 7.25 -10.99 -0.08 10.18 16 14 O -0.52 -12.66 15.29 5.56 0.08 -12.58 16 15 C -0.07 -1.35 3.56 -29.03 -0.10 -1.45 16 16 C -0.17 -3.80 4.43 -103.91 -0.46 -4.26 16 17 C -0.07 -1.49 9.66 -39.66 -0.38 -1.88 16 18 C -0.24 -5.22 10.05 -39.29 -0.39 -5.61 16 19 C -0.08 -1.84 10.02 -39.66 -0.40 -2.23 16 20 C -0.23 -5.88 7.17 -38.87 -0.28 -6.16 16 21 C 0.11 2.83 5.10 -106.83 -0.54 2.28 16 22 C -0.44 -11.93 8.55 -37.75 -0.32 -12.25 16 23 H 0.09 2.56 6.99 -52.48 -0.37 2.20 16 24 C 0.08 2.24 5.41 -17.34 -0.09 2.14 16 25 N -0.81 -21.85 13.93 55.55 0.77 -21.07 16 26 Si 0.91 20.94 24.52 -169.99 -4.17 16.77 16 27 H -0.27 -6.23 6.71 56.52 0.38 -5.85 16 28 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 29 H -0.24 -5.69 6.85 56.52 0.39 -5.30 16 30 C 0.12 1.66 4.90 -5.61 -0.03 1.63 16 31 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 34 H 0.08 0.88 7.97 -51.93 -0.41 0.47 16 35 H 0.08 0.80 7.92 -51.93 -0.41 0.39 16 36 H 0.18 1.75 8.06 -52.48 -0.42 1.33 16 37 H 0.09 0.97 6.04 -51.92 -0.31 0.66 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.10 1.85 7.08 -51.93 -0.37 1.49 16 40 H 0.08 1.16 7.38 -51.93 -0.38 0.78 16 41 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 43 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 44 H 0.10 2.46 4.74 -52.48 -0.25 2.21 16 45 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 46 H 0.06 0.64 8.01 -51.93 -0.42 0.23 16 47 H 0.09 1.46 6.72 -51.93 -0.35 1.11 16 LS Contribution 372.98 15.07 5.62 5.62 Total: -1.00 -33.98 372.98 -9.85 -43.83 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -7.87 Total: 8.89 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -4.48 Total: -21.10 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.96 Total: -41.43 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.08 Total: -12.58 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.17 Total: 16.77 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.98 -9.85 -43.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001419504103.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.141 kcal (2) G-P(sol) polarization free energy of solvation -33.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds