Wall clock time and date at job start Tue Mar 31 2020 23:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.19280 * 2 1 4 4 C 1.53595 * 109.19615 * 119.33631 * 2 1 3 5 5 C 1.51482 * 107.47461 * 201.98111 * 4 2 1 6 6 N 1.30300 * 127.60926 * 114.93277 * 5 4 2 7 7 N 1.40358 * 108.08345 * 180.80025 * 6 5 4 8 8 H 0.97000 * 126.00968 * 179.77628 * 7 6 5 9 9 C 1.35317 * 107.98761 * 359.79630 * 7 6 5 10 10 C 1.34285 * 107.36990 * 359.74023 * 9 7 6 11 11 C 1.51924 * 128.41147 * 181.76603 * 10 9 7 12 12 N 1.47323 * 106.76386 * 240.12061 * 11 10 9 13 13 C 1.34770 * 119.48595 * 101.87303 * 12 11 10 14 14 O 1.21283 * 120.00361 * 180.02562 * 13 12 11 15 15 C 1.50702 * 119.99695 * 359.97438 * 13 12 11 16 16 C 1.50701 * 109.47282 * 180.02562 * 15 13 12 17 17 C 1.37641 * 120.12829 * 265.00180 * 16 15 13 18 18 C 1.38613 * 120.24972 * 180.02562 * 17 16 15 19 19 C 1.38660 * 120.49904 * 359.97438 * 18 17 16 20 20 C 1.37593 * 120.24924 * 0.02562 * 19 18 17 21 21 C 1.40699 * 120.12658 * 84.72671 * 16 15 13 22 22 C 1.41388 * 120.24457 * 359.97438 * 21 16 15 23 23 H 1.08004 * 120.00229 * 329.70089 * 22 21 16 24 24 C 1.39943 * 120.00293 * 149.69703 * 22 21 16 25 25 N 1.30826 * 120.00559 * 162.01813 * 24 22 21 26 26 Si 1.86805 * 119.99872 * 342.02176 * 24 22 21 27 27 H 1.48495 * 109.47259 * 95.39592 * 26 24 22 28 28 H 1.48501 * 109.47229 * 215.39736 * 26 24 22 29 29 H 1.48501 * 109.46979 * 335.39865 * 26 24 22 30 30 C 1.45010 * 121.03856 * 281.86953 * 12 11 10 31 31 H 1.09002 * 109.47401 * 300.66437 * 1 2 3 32 32 H 1.09004 * 109.47253 * 180.66235 * 1 2 3 33 33 H 1.09001 * 109.47350 * 60.66011 * 1 2 3 34 34 H 1.08999 * 109.86029 * 321.47282 * 4 2 1 35 35 H 1.08998 * 109.85428 * 82.42274 * 4 2 1 36 36 H 1.08003 * 126.31308 * 179.75897 * 9 7 6 37 37 H 1.09008 * 109.98842 * 359.42895 * 11 10 9 38 38 H 1.08996 * 109.99599 * 120.70475 * 11 10 9 39 39 H 1.09000 * 109.47421 * 300.00582 * 15 13 12 40 40 H 1.09002 * 109.47000 * 60.00619 * 15 13 12 41 41 H 1.08001 * 119.87647 * 359.97438 * 17 16 15 42 42 H 1.07994 * 119.75267 * 179.97438 * 18 17 16 43 43 H 1.07998 * 119.87781 * 179.97438 * 19 18 17 44 44 H 1.08007 * 120.12928 * 179.97438 * 20 19 18 45 45 H 0.97001 * 120.00171 * 180.02562 * 25 24 22 46 46 H 1.08996 * 108.36806 * 308.03525 * 30 12 11 47 47 H 1.09001 * 108.36842 * 190.91717 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8883 1.0294 0.0000 4 6 2.0350 -0.7107 1.2645 5 6 3.4499 -0.2338 1.5199 6 7 3.8839 0.4625 2.5322 7 7 5.2561 0.6920 2.3469 8 1 5.8374 1.1870 2.9451 9 6 5.6256 0.1016 1.1867 10 6 4.5325 -0.4801 0.6670 11 6 4.4153 -1.3025 -0.6050 12 7 3.4565 -0.6022 -1.4770 13 6 3.9141 0.1408 -2.5041 14 8 3.1331 0.7217 -3.2277 15 6 5.3964 0.2506 -2.7529 16 6 5.6408 1.1323 -3.9504 17 6 5.8065 0.5737 -5.1974 18 6 6.0320 1.3822 -6.3004 19 6 6.0929 2.7606 -6.1619 20 6 5.9301 3.3408 -4.9250 21 6 5.6948 2.5301 -3.7989 22 6 5.5197 3.1155 -2.5239 23 1 4.8937 2.6316 -1.7888 24 6 6.1577 4.3220 -2.2142 25 7 5.7412 5.0419 -1.2044 26 14 7.6040 4.9046 -3.2430 27 1 7.1225 5.8461 -4.2855 28 1 8.5871 5.5941 -2.3693 29 1 8.2521 3.7367 -3.8920 30 6 2.0280 -0.6996 -1.2477 31 1 -0.3634 0.5241 0.8840 32 1 -0.3634 -1.0276 0.0119 33 1 -0.3634 0.5035 -0.8958 34 1 1.3993 -0.4545 2.1121 35 1 2.0290 -1.7897 1.1102 36 1 6.6169 0.0985 0.7580 37 1 5.3861 -1.3692 -1.0963 38 1 4.0474 -2.3013 -0.3704 39 1 5.8806 0.6843 -1.8779 40 1 5.8076 -0.7411 -2.9416 41 1 5.7615 -0.4988 -5.3167 42 1 6.1614 0.9354 -7.2750 43 1 6.2695 3.3810 -7.0281 44 1 5.9782 4.4146 -4.8193 45 1 6.1832 5.8784 -0.9901 46 1 1.7622 -1.7545 -1.1794 47 1 1.5121 -0.2749 -2.1089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001419504103.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:07 Heat of formation + Delta-G solvation = 32.538363 kcal Electronic energy + Delta-G solvation = -30366.107920 eV Core-core repulsion = 26513.751117 eV Total energy + Delta-G solvation = -3852.356802 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.39380 -40.90316 -39.44441 -37.79112 -35.54618 -35.47474 -33.46163 -32.89464 -32.13968 -31.54219 -29.16525 -28.07541 -27.35386 -26.77549 -25.81366 -23.19403 -22.34271 -21.95949 -21.36437 -20.34287 -19.89617 -19.23410 -18.76384 -17.83017 -17.57131 -16.97674 -16.52904 -16.10455 -15.71640 -15.66157 -15.47766 -15.41612 -15.27239 -14.59082 -14.40896 -14.17999 -14.08250 -13.90926 -13.77975 -13.66981 -13.21447 -13.18115 -12.98935 -12.68095 -12.66086 -12.54313 -12.50415 -12.38984 -12.05272 -11.97930 -11.71275 -11.52745 -11.43748 -11.29756 -10.96375 -10.67991 -10.32389 -9.66911 -9.37644 -9.35918 -9.25021 -8.85484 -6.43262 0.81782 0.92833 1.00793 1.25834 1.38083 1.47900 1.66304 1.89363 2.04629 2.12862 2.41511 2.66432 3.53121 3.61273 3.82342 3.89402 3.96397 4.09439 4.23414 4.27565 4.30639 4.39702 4.46622 4.49852 4.55117 4.61684 4.62992 4.74045 4.74741 4.81592 4.85013 4.94886 4.97167 5.01914 5.05222 5.11963 5.18484 5.19454 5.29410 5.39038 5.40088 5.69919 5.71585 5.84947 5.89778 5.98665 6.08371 6.31884 6.46410 6.48127 6.54187 6.76190 6.83149 6.93195 7.45508 8.22281 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011473 B = 0.004616 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.965222 B = 6065.023476 C = 7208.183702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 H 0.020 0.980 4 C -0.025 4.025 5 C 0.077 3.923 6 N -0.332 5.332 7 N -0.485 5.485 8 H 0.446 0.554 9 C 0.082 3.918 10 C -0.277 4.277 11 C 0.188 3.812 12 N -0.605 5.605 13 C 0.515 3.485 14 O -0.581 6.581 15 C -0.069 4.069 16 C -0.169 4.169 17 C -0.078 4.078 18 C -0.228 4.228 19 C -0.093 4.093 20 C -0.258 4.258 21 C 0.083 3.917 22 C -0.463 4.463 23 H 0.050 0.950 24 C 0.048 3.952 25 N -0.856 5.856 26 Si 0.963 3.037 27 H -0.272 1.272 28 H -0.279 1.279 29 H -0.247 1.247 30 C 0.114 3.886 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.046 0.954 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.204 0.796 37 H 0.110 0.890 38 H 0.119 0.881 39 H 0.092 0.908 40 H 0.125 0.875 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.119 0.881 44 H 0.087 0.913 45 H 0.288 0.712 46 H 0.102 0.898 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.119 -16.377 4.989 17.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.115 4.115 3 H 0.039 0.961 4 C -0.063 4.063 5 C -0.092 4.092 6 N -0.154 5.154 7 N -0.193 5.193 8 H 0.292 0.708 9 C -0.066 4.066 10 C -0.290 4.290 11 C 0.066 3.934 12 N -0.337 5.337 13 C 0.305 3.695 14 O -0.460 6.460 15 C -0.108 4.108 16 C -0.170 4.170 17 C -0.096 4.096 18 C -0.247 4.247 19 C -0.112 4.112 20 C -0.277 4.277 21 C 0.081 3.919 22 C -0.493 4.493 23 H 0.068 0.932 24 C -0.165 4.165 25 N -0.484 5.484 26 Si 0.788 3.212 27 H -0.199 1.199 28 H -0.206 1.206 29 H -0.170 1.170 30 C -0.009 4.009 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.136 0.864 36 H 0.221 0.779 37 H 0.128 0.872 38 H 0.137 0.863 39 H 0.110 0.890 40 H 0.143 0.857 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.137 0.863 44 H 0.104 0.896 45 H 0.098 0.902 46 H 0.120 0.880 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.852 -15.326 5.923 16.453 hybrid contribution 0.879 1.556 -0.312 1.814 sum 0.027 -13.770 5.611 14.869 Atomic orbital electron populations 1.21740 0.92040 1.03756 1.01858 1.21168 0.97503 0.98023 0.94777 0.96141 1.20487 0.87246 1.01372 0.97242 1.22843 0.98117 0.96235 0.91987 1.76992 0.91152 1.22301 1.24970 1.46428 1.07457 1.45316 1.20147 0.70825 1.22643 1.01460 0.94414 0.88068 1.20739 0.92861 1.12657 1.02729 1.20582 0.94065 0.93980 0.84811 1.47862 1.07221 1.49465 1.29161 1.21254 0.91906 0.76653 0.79720 1.90640 1.59548 1.46318 1.49508 1.20357 0.91495 1.00843 0.98150 1.19611 1.09959 0.92618 0.94858 1.20915 0.97428 0.99409 0.91839 1.20883 1.11906 0.93073 0.98794 1.20961 0.98368 0.95881 0.95944 1.21122 1.14607 0.97709 0.94253 1.17720 0.89332 0.92501 0.92397 1.19230 1.26481 1.04728 0.98816 0.93209 1.26774 0.99680 0.94556 0.95501 1.69781 1.38186 1.12326 1.28062 0.85521 0.78321 0.79482 0.77893 1.19857 1.20571 1.16994 1.20838 0.80953 1.01897 0.97235 0.91938 0.89211 0.93512 0.89766 0.86406 0.77880 0.87178 0.86325 0.89016 0.85736 0.85222 0.85348 0.86293 0.89561 0.90169 0.87970 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.01 71.98 0.65 -2.19 16 2 C -0.09 -2.50 2.63 -11.10 -0.03 -2.53 16 3 H 0.02 0.76 7.89 -2.39 -0.02 0.74 16 4 C -0.02 -0.54 5.34 30.30 0.16 -0.38 16 5 C 0.08 2.20 6.40 43.46 0.28 2.48 16 6 N -0.33 -10.61 12.69 -46.93 -0.60 -11.21 16 7 N -0.48 -13.21 7.38 -57.98 -0.43 -13.64 16 8 H 0.45 9.68 8.96 -213.15 -1.91 7.77 16 9 C 0.08 2.06 11.97 83.25 1.00 3.05 16 10 C -0.28 -7.27 5.62 -19.95 -0.11 -7.38 16 11 C 0.19 3.97 6.03 85.87 0.52 4.49 16 12 N -0.61 -18.00 2.66 -828.41 -2.20 -20.20 16 13 C 0.51 20.32 7.25 87.66 0.64 20.95 16 14 O -0.58 -29.23 15.29 -3.04 -0.05 -29.28 16 15 C -0.07 -2.52 3.56 29.10 0.10 -2.42 16 16 C -0.17 -7.57 4.43 -19.40 -0.09 -7.65 16 17 C -0.08 -3.08 9.66 22.22 0.21 -2.87 16 18 C -0.23 -8.96 10.05 22.46 0.23 -8.73 16 19 C -0.09 -4.05 10.02 22.22 0.22 -3.83 16 20 C -0.26 -12.98 7.17 22.73 0.16 -12.82 16 21 C 0.08 4.34 5.10 -21.29 -0.11 4.23 16 22 C -0.46 -26.35 8.55 23.46 0.20 -26.15 16 23 H 0.05 3.13 6.99 -2.91 -0.02 3.11 16 24 C 0.05 2.65 5.41 85.26 0.46 3.11 16 25 N -0.86 -48.78 13.93 21.83 0.30 -48.47 16 26 Si 0.96 44.31 24.52 68.60 1.68 45.99 16 27 H -0.27 -12.38 6.71 99.48 0.67 -11.71 16 28 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 29 H -0.25 -11.29 6.85 99.48 0.68 -10.61 16 30 C 0.11 3.09 4.90 86.16 0.42 3.51 16 31 H 0.06 1.24 8.13 -2.39 -0.02 1.22 16 32 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.05 1.10 8.12 -2.39 -0.02 1.08 16 34 H 0.08 1.78 7.97 -2.39 -0.02 1.76 16 35 H 0.12 1.79 7.92 -2.39 -0.02 1.77 16 36 H 0.20 3.77 8.06 -2.91 -0.02 3.74 16 37 H 0.11 1.92 6.04 -2.38 -0.01 1.90 16 38 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.09 3.47 7.08 -2.39 -0.02 3.46 16 40 H 0.12 3.25 7.38 -2.39 -0.02 3.23 16 41 H 0.13 4.11 8.06 -2.91 -0.02 4.08 16 42 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 43 H 0.12 4.39 8.06 -2.91 -0.02 4.36 16 44 H 0.09 4.44 4.74 -2.91 -0.01 4.42 16 45 H 0.29 14.89 8.30 -92.71 -0.77 14.12 16 46 H 0.10 1.89 8.01 -2.39 -0.02 1.87 16 47 H 0.06 1.99 6.72 -2.39 -0.02 1.97 16 Total: -1.00 -80.56 372.98 2.66 -77.90 By element: Atomic # 1 Polarization: 35.02 SS G_CDS: -0.97 Total: 34.05 kcal Atomic # 6 Polarization: -40.05 SS G_CDS: 4.92 Total: -35.13 kcal Atomic # 7 Polarization: -90.60 SS G_CDS: -2.92 Total: -93.52 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.05 Total: -29.28 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.68 Total: 45.99 kcal Total: -80.56 2.66 -77.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001419504103.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.438 kcal (2) G-P(sol) polarization free energy of solvation -80.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds