Wall clock time and date at job start Tue Mar 31 2020 22:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47301 * 2 1 4 4 C 1.38351 * 120.34371 * 269.99619 * 3 2 1 5 5 N 1.31933 * 121.07487 * 179.97438 * 4 3 2 6 6 C 1.31694 * 121.87963 * 359.97438 * 5 4 3 7 7 C 1.39522 * 120.56847 * 0.02702 * 6 5 4 8 8 C 1.47835 * 120.55672 * 179.97438 * 7 6 5 9 9 O 1.21552 * 119.99717 * 180.02562 * 8 7 6 10 10 N 1.34780 * 120.00398 * 359.97438 * 8 7 6 11 11 C 1.46495 * 120.00092 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47141 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.47586 * 64.99656 * 12 11 10 14 14 N 1.46499 * 109.47304 * 304.99885 * 12 11 10 15 15 C 1.36930 * 120.00354 * 155.00043 * 14 12 11 16 16 H 1.07994 * 120.00130 * 359.97438 * 15 14 12 17 17 C 1.38818 * 120.00035 * 180.02562 * 15 14 12 18 18 N 1.31610 * 119.99891 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99907 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47116 * 89.99618 * 19 17 15 21 21 H 1.48504 * 109.46750 * 209.99731 * 19 17 15 22 22 H 1.48502 * 109.47211 * 329.99721 * 19 17 15 23 23 C 1.50704 * 109.47436 * 184.99326 * 12 11 10 24 24 C 1.38238 * 119.99402 * 79.72645 * 23 12 11 25 25 C 1.38236 * 119.99591 * 179.79184 * 24 23 12 26 26 C 1.38237 * 119.99787 * 0.43589 * 25 24 23 27 27 C 1.38225 * 120.00286 * 359.81987 * 26 25 24 28 28 C 1.38232 * 120.00214 * 260.00223 * 23 12 11 29 29 C 1.38357 * 120.34866 * 90.00030 * 3 2 1 30 30 H 1.09004 * 109.47516 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47522 * 300.00260 * 1 2 3 32 32 H 1.09003 * 109.47166 * 60.00172 * 1 2 3 33 33 H 1.08997 * 109.47403 * 239.99205 * 2 1 3 34 34 H 1.09003 * 109.47166 * 119.99828 * 2 1 3 35 35 H 1.08000 * 119.46214 * 359.97438 * 4 3 2 36 36 H 1.07998 * 119.71060 * 179.97438 * 6 5 4 37 37 H 0.97000 * 119.99326 * 359.97438 * 10 8 7 38 38 H 1.09006 * 109.46868 * 299.99837 * 11 10 8 39 39 H 1.08999 * 109.47678 * 59.99914 * 11 10 8 40 40 H 0.97003 * 119.99637 * 334.99620 * 14 12 11 41 41 H 0.97007 * 119.99981 * 180.02562 * 18 17 15 42 42 H 1.08003 * 120.00363 * 359.97438 * 24 23 12 43 43 H 1.07999 * 120.00100 * 180.27667 * 25 24 23 44 44 H 1.08003 * 119.99535 * 179.83467 * 26 25 24 45 45 H 1.08004 * 120.00161 * 179.97438 * 27 26 25 46 46 H 1.07996 * 119.99875 * 359.97438 * 28 23 12 47 47 H 1.08002 * 120.85567 * 0.04322 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2654 2.0797 -1.1940 5 7 2.7047 3.3237 -1.2108 6 6 2.9403 3.9932 -0.1015 7 6 2.7303 3.3997 1.1436 8 6 2.9954 4.1513 2.3888 9 8 2.8094 3.6241 3.4681 10 7 3.4442 5.4207 2.3272 11 6 3.7074 6.1652 3.5611 12 6 4.2047 7.5696 3.2130 13 1 3.4120 8.1208 2.7071 14 7 5.3701 7.4704 2.3309 15 6 5.6810 8.5040 1.4883 16 1 5.0669 9.3922 1.4737 17 6 6.7850 8.4096 0.6520 18 7 7.5331 7.3270 0.6694 19 14 7.2088 9.8194 -0.4980 20 1 8.1235 10.7636 0.1925 21 1 7.8745 9.2841 -1.7128 22 1 5.9651 10.5310 -0.8880 23 6 4.5916 8.2932 4.4771 24 6 5.8134 8.0397 5.0722 25 6 6.1701 8.7066 6.2293 26 6 5.3014 9.6202 6.7963 27 6 4.0775 9.8697 6.2042 28 6 3.7225 9.2061 5.0447 29 6 2.2654 2.0799 1.1940 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0848 1.5675 -2.1275 36 1 3.2999 5.0100 -0.1561 37 1 3.5937 5.8409 1.4658 38 1 2.7892 6.2386 4.1440 39 1 4.4674 5.6452 4.1442 40 1 5.9215 6.6724 2.3438 41 1 8.3048 7.2612 0.0853 42 1 6.4904 7.3229 4.6314 43 1 7.1265 8.5119 6.6918 44 1 5.5790 10.1392 7.7018 45 1 3.3986 10.5833 6.6474 46 1 2.7664 9.4011 4.5820 47 1 2.0926 1.5892 2.1404 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481367787.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:31 Heat of formation + Delta-G solvation = 26.816253 kcal Electronic energy + Delta-G solvation = -28280.940541 eV Core-core repulsion = 24428.335609 eV Total energy + Delta-G solvation = -3852.604931 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.65513 -39.21839 -38.61867 -35.95712 -34.98239 -33.66667 -32.41411 -31.86281 -30.43251 -29.94412 -29.58394 -27.58728 -24.86644 -24.43387 -23.49581 -22.67567 -22.12876 -21.89050 -20.19085 -19.87891 -17.82602 -17.30623 -16.96623 -16.55536 -16.30772 -15.40935 -15.33144 -14.99056 -14.64574 -14.61967 -14.19895 -14.08112 -13.98848 -13.67492 -13.35583 -13.18224 -12.98595 -12.86269 -12.81979 -12.78865 -12.38757 -12.33384 -12.00700 -11.76370 -11.30889 -11.16451 -10.97329 -10.85889 -10.74618 -10.48785 -10.16245 -10.09227 -9.85642 -9.82304 -9.40226 -9.12174 -9.10036 -8.74434 -8.42701 -8.21414 -7.16510 -5.88807 -3.20674 0.62837 1.12367 1.84059 1.90813 2.97116 3.34844 3.38788 3.44208 3.45190 3.83557 4.25470 4.28458 4.47692 4.49147 4.64747 4.81492 4.83145 4.97772 5.06909 5.16039 5.21433 5.31417 5.32493 5.38941 5.43818 5.52395 5.54813 5.59887 5.61913 5.68283 5.74756 5.82977 5.91439 5.98945 6.01399 6.06512 6.09871 6.22953 6.37958 6.45503 6.49273 6.60491 6.69807 6.91422 6.99912 7.25875 7.50769 7.62082 7.75265 7.82582 8.26835 8.38425 9.40279 9.89176 10.25808 11.32337 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009787 B = 0.003179 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.192818 B = 8805.810181 C =11081.460430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.078 4.078 3 C -0.148 4.148 4 C 0.119 3.881 5 N -0.482 5.482 6 C 0.136 3.864 7 C -0.178 4.178 8 C 0.560 3.440 9 O -0.547 6.547 10 N -0.705 5.705 11 C 0.121 3.879 12 C 0.197 3.803 13 H 0.066 0.934 14 N -0.714 5.714 15 C -0.246 4.246 16 H 0.072 0.928 17 C -0.004 4.004 18 N -0.927 5.927 19 Si 0.905 3.095 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.281 1.281 23 C -0.082 4.082 24 C -0.083 4.083 25 C -0.127 4.127 26 C -0.134 4.134 27 C -0.130 4.130 28 C -0.120 4.120 29 C -0.018 4.018 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.157 0.843 36 H 0.165 0.835 37 H 0.411 0.589 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.387 0.613 41 H 0.257 0.743 42 H 0.123 0.877 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.115 0.885 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.015 -9.067 2.868 15.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.116 4.116 3 C -0.150 4.150 4 C -0.038 4.038 5 N -0.189 5.189 6 C -0.022 4.022 7 C -0.183 4.183 8 C 0.346 3.654 9 O -0.427 6.427 10 N -0.356 5.356 11 C -0.004 4.004 12 C 0.086 3.914 13 H 0.084 0.916 14 N -0.355 5.355 15 C -0.377 4.377 16 H 0.089 0.911 17 C -0.200 4.200 18 N -0.574 5.574 19 Si 0.736 3.264 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.206 1.206 23 C -0.085 4.085 24 C -0.102 4.102 25 C -0.146 4.146 26 C -0.152 4.152 27 C -0.148 4.148 28 C -0.139 4.139 29 C -0.045 4.045 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.174 0.826 36 H 0.182 0.818 37 H 0.248 0.752 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.222 0.778 41 H 0.067 0.933 42 H 0.141 0.859 43 H 0.131 0.869 44 H 0.129 0.871 45 H 0.130 0.870 46 H 0.133 0.867 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.963 -8.854 2.682 15.123 hybrid contribution 0.714 0.592 -0.179 0.944 sum -11.250 -8.262 2.503 14.180 Atomic orbital electron populations 1.21774 0.94496 1.01926 1.02387 1.20465 0.96272 0.91491 1.03421 1.20886 1.02086 0.98179 0.93845 1.22882 0.92914 0.90450 0.97529 1.67744 1.11725 1.08378 1.31065 1.23157 0.92491 0.99864 0.86697 1.21053 1.05760 0.96441 0.95034 1.17991 0.77499 0.81726 0.88192 1.90745 1.53341 1.68961 1.29627 1.45887 1.65502 1.13009 1.11234 1.21638 1.00588 0.92267 0.85865 1.19489 0.91752 0.91654 0.88472 0.91566 1.42468 1.29194 1.20366 1.43492 1.19173 1.08716 0.96314 1.13492 0.91051 1.24718 0.97784 0.97435 1.00104 1.69648 1.18746 1.27147 1.41845 0.86233 0.78188 0.81644 0.80346 1.21729 1.21733 1.20650 1.20961 0.94319 0.96849 0.96407 1.21008 0.96128 0.99086 0.93942 1.21108 0.99200 0.97507 0.96744 1.20983 0.94865 0.99278 1.00100 1.20983 0.96873 1.00314 0.96630 1.21010 0.99363 0.97421 0.96096 1.21579 0.91678 0.92375 0.98823 0.92140 0.92440 0.92454 0.90491 0.90583 0.82594 0.81815 0.75161 0.91231 0.91317 0.77848 0.93335 0.85916 0.86853 0.87085 0.86987 0.86730 0.83763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 37.16 0.37 -0.64 16 2 C -0.08 -0.58 6.08 -27.89 -0.17 -0.75 16 3 C -0.15 -1.56 5.15 -104.54 -0.54 -2.10 16 4 C 0.12 1.35 10.85 -17.47 -0.19 1.16 16 5 N -0.48 -6.80 10.35 -12.91 -0.13 -6.93 16 6 C 0.14 1.95 10.71 -17.13 -0.18 1.77 16 7 C -0.18 -2.57 5.89 -104.82 -0.62 -3.18 16 8 C 0.56 9.21 7.78 -12.33 -0.10 9.11 16 9 O -0.55 -10.34 16.42 5.32 0.09 -10.25 16 10 N -0.70 -11.28 5.34 -61.26 -0.33 -11.61 16 11 C 0.12 1.98 5.21 -4.05 -0.02 1.96 16 12 C 0.20 3.53 2.64 -69.08 -0.18 3.35 16 13 H 0.07 1.17 7.94 -51.93 -0.41 0.76 16 14 N -0.71 -15.68 3.81 -54.55 -0.21 -15.89 16 15 C -0.25 -6.19 9.92 -15.06 -0.15 -6.34 16 16 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 17 C 0.00 -0.09 5.50 -17.43 -0.10 -0.19 16 18 N -0.93 -26.09 13.06 55.49 0.72 -25.37 16 19 Si 0.91 21.46 29.55 -169.99 -5.02 16.44 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C -0.08 -1.44 4.92 -104.62 -0.51 -1.95 16 24 C -0.08 -1.51 9.32 -39.58 -0.37 -1.88 16 25 C -0.13 -2.04 10.05 -39.58 -0.40 -2.44 16 26 C -0.13 -1.95 10.05 -39.59 -0.40 -2.35 16 27 C -0.13 -1.88 10.05 -39.59 -0.40 -2.28 16 28 C -0.12 -1.89 9.67 -39.58 -0.38 -2.27 16 29 C -0.02 -0.23 9.39 -38.87 -0.37 -0.59 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.47 8.09 -51.93 -0.42 0.05 16 34 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 35 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.16 2.28 6.42 -52.49 -0.34 1.95 16 37 H 0.41 6.54 6.20 -40.82 -0.25 6.29 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.39 9.22 7.80 -40.82 -0.32 8.90 16 41 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.12 2.38 7.73 -52.48 -0.41 1.97 16 43 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 44 H 0.11 1.33 8.06 -52.48 -0.42 0.90 16 45 H 0.11 1.32 8.06 -52.48 -0.42 0.90 16 46 H 0.11 1.57 8.04 -52.49 -0.42 1.15 16 47 H 0.14 1.73 7.74 -52.49 -0.41 1.32 16 LS Contribution 400.06 15.07 6.03 6.03 Total: -1.00 -30.38 400.06 -10.30 -40.68 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: -6.75 Total: 16.53 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -4.70 Total: -9.63 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: 0.06 Total: -59.79 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.38 -10.30 -40.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481367787.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.498 kcal (2) G-P(sol) polarization free energy of solvation -30.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds