Wall clock time and date at job start Tue Mar 31 2020 22:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.47214 * 2 1 4 4 C 1.38344 * 120.35085 * 269.98113 * 3 2 1 5 5 N 1.31929 * 121.08317 * 180.02562 * 4 3 2 6 6 C 1.31696 * 121.87369 * 359.97438 * 5 4 3 7 7 C 1.39515 * 120.57089 * 0.02562 * 6 5 4 8 8 C 1.47844 * 120.56153 * 179.97438 * 7 6 5 9 9 O 1.21548 * 120.00087 * 179.97438 * 8 7 6 10 10 N 1.34776 * 119.99617 * 0.02562 * 8 7 6 11 11 C 1.46503 * 119.99872 * 179.97438 * 10 8 7 12 12 C 1.52992 * 109.47172 * 180.02562 * 11 10 8 13 13 H 1.09003 * 109.47314 * 294.99995 * 12 11 10 14 14 N 1.46503 * 109.47659 * 54.99916 * 12 11 10 15 15 C 1.36935 * 119.99881 * 54.93238 * 14 12 11 16 16 H 1.08003 * 120.00043 * 5.46894 * 15 14 12 17 17 C 1.38813 * 120.00499 * 185.46499 * 15 14 12 18 18 N 1.31618 * 119.99293 * 0.02562 * 17 15 14 19 19 Si 1.86790 * 120.00483 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47083 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47089 * 119.99857 * 19 17 15 22 22 H 1.48496 * 109.47228 * 240.00009 * 19 17 15 23 23 C 1.50706 * 109.47202 * 175.00153 * 12 11 10 24 24 C 1.38238 * 119.99706 * 206.65402 * 23 12 11 25 25 C 1.38241 * 119.99640 * 179.78878 * 24 23 12 26 26 C 1.38233 * 119.99601 * 0.43253 * 25 24 23 27 27 C 1.38229 * 120.00528 * 359.81839 * 26 25 24 28 28 C 1.38230 * 119.99966 * 26.92056 * 23 12 11 29 29 C 1.38359 * 120.34538 * 89.99514 * 3 2 1 30 30 H 1.09007 * 109.46692 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47149 * 299.99836 * 1 2 3 32 32 H 1.08995 * 109.46922 * 60.00038 * 1 2 3 33 33 H 1.09005 * 109.47337 * 239.99960 * 2 1 3 34 34 H 1.09000 * 109.47348 * 120.00120 * 2 1 3 35 35 H 1.08005 * 119.45860 * 0.04032 * 4 3 2 36 36 H 1.07999 * 119.71177 * 179.97438 * 6 5 4 37 37 H 0.97002 * 120.00458 * 359.97438 * 10 8 7 38 38 H 1.08999 * 109.46931 * 299.99817 * 11 10 8 39 39 H 1.08999 * 109.46851 * 59.99439 * 11 10 8 40 40 H 0.96999 * 119.99986 * 234.94352 * 14 12 11 41 41 H 0.97000 * 119.99766 * 179.97438 * 18 17 15 42 42 H 1.08003 * 120.00267 * 359.97438 * 24 23 12 43 43 H 1.07997 * 119.99675 * 180.27574 * 25 24 23 44 44 H 1.08004 * 119.99609 * 179.83843 * 26 25 24 45 45 H 1.08000 * 120.00108 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.00008 * 359.97438 * 28 23 12 47 47 H 1.08001 * 120.85515 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2658 2.0798 -1.1938 5 7 2.7060 3.3233 -1.2107 6 6 2.9422 3.9925 -0.1013 7 6 2.7320 3.3991 1.1437 8 6 2.9978 4.1503 2.3890 9 8 2.8107 3.6235 3.4683 10 7 3.4467 5.4197 2.3274 11 6 3.7095 6.1643 3.5614 12 6 4.2057 7.5691 3.2135 13 1 5.1689 7.4995 2.7079 14 7 3.2373 8.2245 2.3308 15 6 1.9263 8.3309 2.7117 16 1 1.6229 8.0119 3.6980 17 6 0.9872 8.8486 1.8304 18 7 1.3569 9.2369 0.6283 19 14 -0.8010 8.9944 2.3502 20 1 -0.9549 8.4936 3.7398 21 1 -1.2200 10.4178 2.2883 22 1 -1.6495 8.1884 1.4362 23 6 4.3590 8.3752 4.4776 24 6 4.2508 9.7527 4.4362 25 6 4.3871 10.4918 5.5965 26 6 4.6404 9.8540 6.7964 27 6 4.7537 8.4769 6.8369 28 6 4.6132 7.7375 5.6773 29 6 2.2653 2.0799 1.1940 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0844 1.5678 -2.1274 36 1 3.3026 5.0091 -0.1558 37 1 3.5957 5.8402 1.4661 38 1 2.7913 6.2377 4.1441 39 1 4.4694 5.6442 4.1447 40 1 3.5248 8.5829 1.4765 41 1 0.7006 9.5984 0.0122 42 1 4.0568 10.2513 3.4980 43 1 4.2981 11.5677 5.5649 44 1 4.7494 10.4316 7.7025 45 1 4.9520 7.9787 7.7743 46 1 4.7016 6.6616 5.7089 47 1 2.0922 1.5892 2.1405 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481367788.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:34 Heat of formation + Delta-G solvation = 13.902093 kcal Electronic energy + Delta-G solvation = -28667.857570 eV Core-core repulsion = 24814.692638 eV Total energy + Delta-G solvation = -3853.164931 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.71879 -40.52984 -39.83922 -37.44882 -35.81048 -35.12004 -33.82278 -33.11177 -31.80130 -31.07731 -30.75098 -28.73497 -26.46374 -25.59278 -25.04240 -23.78968 -23.16506 -22.82282 -21.45189 -21.06422 -19.35202 -18.78322 -18.06699 -17.60730 -17.53937 -16.92824 -16.45680 -16.31458 -15.87175 -15.81338 -15.68768 -15.32256 -15.04180 -14.76038 -14.68843 -14.53298 -14.15484 -14.12989 -13.94434 -13.65057 -13.53329 -13.44185 -13.15487 -13.04205 -12.92484 -12.53780 -12.43807 -12.06114 -11.94678 -11.88936 -11.84740 -11.50881 -11.30783 -10.99860 -10.89226 -10.46607 -10.13642 -9.89632 -9.65126 -9.47984 -9.01920 -7.93786 -5.20778 -0.39679 0.13818 0.61032 0.68368 1.38667 1.43480 1.48693 1.80012 2.17958 2.53482 2.79072 3.03853 3.28483 3.40751 3.62854 3.79520 3.80496 3.85359 3.90174 4.01463 4.09988 4.20549 4.27378 4.33356 4.36203 4.41244 4.48182 4.50433 4.54157 4.67797 4.83301 4.84564 4.92475 4.93603 4.97759 5.09946 5.10952 5.25504 5.32122 5.32867 5.36974 5.44320 5.57033 5.58093 5.72568 5.77240 5.95733 6.26799 6.30474 6.52372 6.81457 7.14716 7.38165 8.02831 8.31418 9.27890 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011056 B = 0.003296 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.946428 B = 8492.520756 C = 9872.953861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.074 4.074 3 C -0.135 4.135 4 C 0.119 3.881 5 N -0.502 5.502 6 C 0.126 3.874 7 C -0.192 4.192 8 C 0.557 3.443 9 O -0.582 6.582 10 N -0.691 5.691 11 C 0.126 3.874 12 C 0.200 3.800 13 H 0.097 0.903 14 N -0.714 5.714 15 C -0.203 4.203 16 H 0.057 0.943 17 C -0.054 4.054 18 N -0.954 5.954 19 Si 0.939 3.061 20 H -0.280 1.280 21 H -0.294 1.294 22 H -0.300 1.300 23 C -0.096 4.096 24 C -0.100 4.100 25 C -0.137 4.137 26 C -0.131 4.131 27 C -0.129 4.129 28 C -0.133 4.133 29 C -0.028 4.028 30 H 0.079 0.921 31 H 0.040 0.960 32 H 0.056 0.944 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.192 0.808 36 H 0.160 0.840 37 H 0.408 0.592 38 H 0.040 0.960 39 H 0.078 0.922 40 H 0.381 0.619 41 H 0.248 0.752 42 H 0.106 0.894 43 H 0.128 0.872 44 H 0.142 0.858 45 H 0.142 0.858 46 H 0.129 0.871 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.803 -13.660 1.736 15.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.112 4.112 3 C -0.137 4.137 4 C -0.038 4.038 5 N -0.210 5.210 6 C -0.031 4.031 7 C -0.197 4.197 8 C 0.344 3.656 9 O -0.464 6.464 10 N -0.340 5.340 11 C 0.000 4.000 12 C 0.090 3.910 13 H 0.115 0.885 14 N -0.353 5.353 15 C -0.335 4.335 16 H 0.075 0.925 17 C -0.248 4.248 18 N -0.605 5.605 19 Si 0.771 3.229 20 H -0.206 1.206 21 H -0.221 1.221 22 H -0.227 1.227 23 C -0.099 4.099 24 C -0.119 4.119 25 C -0.155 4.155 26 C -0.149 4.149 27 C -0.147 4.147 28 C -0.152 4.152 29 C -0.055 4.055 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.121 0.879 34 H 0.102 0.898 35 H 0.209 0.791 36 H 0.177 0.823 37 H 0.245 0.755 38 H 0.059 0.941 39 H 0.096 0.904 40 H 0.215 0.785 41 H 0.057 0.943 42 H 0.124 0.876 43 H 0.146 0.854 44 H 0.160 0.840 45 H 0.160 0.840 46 H 0.147 0.853 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 6.666 -13.581 1.773 15.232 hybrid contribution -1.419 0.705 0.335 1.619 sum 5.247 -12.876 2.107 14.062 Atomic orbital electron populations 1.21787 0.94301 1.02931 1.01674 1.20564 0.96258 0.89331 1.05037 1.21224 1.00228 0.99620 0.92649 1.23487 0.91493 0.89600 0.99172 1.67756 1.12881 1.09599 1.30793 1.23056 0.93630 0.99611 0.86826 1.20966 1.07432 0.97131 0.94189 1.18312 0.76798 0.81948 0.88554 1.90695 1.54733 1.70086 1.30903 1.45661 1.65089 1.12223 1.11009 1.21723 0.99869 0.92588 0.85817 1.19512 0.93230 0.88751 0.89515 0.88511 1.42381 1.04654 1.68053 1.20241 1.19054 0.85244 1.32421 0.96810 0.92493 1.25087 0.99882 1.03347 0.96434 1.69727 1.33451 1.50264 1.07023 0.85591 0.83490 0.76748 0.77101 1.20562 1.22120 1.22744 1.20641 0.98658 0.94642 0.95983 1.20998 0.98215 0.94110 0.98565 1.21362 1.00780 1.00402 0.92973 1.21374 1.00438 0.95050 0.98056 1.21378 1.00461 0.94361 0.98523 1.21306 1.01018 1.00394 0.92433 1.21759 0.91806 0.91968 0.99959 0.90188 0.94056 0.92532 0.87898 0.89816 0.79131 0.82252 0.75510 0.94140 0.90397 0.78536 0.94259 0.87622 0.85369 0.83999 0.83984 0.85299 0.83724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.90 71.98 0.71 -1.33 16 2 C -0.07 -0.98 6.08 29.85 0.18 -0.80 16 3 C -0.14 -2.80 5.15 -19.81 -0.10 -2.91 16 4 C 0.12 2.59 10.85 84.70 0.92 3.51 16 5 N -0.50 -14.27 10.35 -194.76 -2.02 -16.28 16 6 C 0.13 3.83 10.71 85.02 0.91 4.74 16 7 C -0.19 -6.02 5.89 -19.99 -0.12 -6.14 16 8 C 0.56 20.22 7.78 86.79 0.68 20.90 16 9 O -0.58 -24.12 16.42 -3.87 -0.06 -24.19 16 10 N -0.69 -24.08 5.34 -465.99 -2.49 -26.57 16 11 C 0.13 4.43 3.87 86.38 0.33 4.76 16 12 C 0.20 6.98 3.26 44.24 0.14 7.13 16 13 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 14 N -0.71 -30.87 3.82 -326.49 -1.25 -32.12 16 15 C -0.20 -10.31 8.52 84.03 0.72 -9.59 16 16 H 0.06 3.04 7.19 -2.91 -0.02 3.02 16 17 C -0.05 -2.95 5.50 84.86 0.47 -2.48 16 18 N -0.95 -54.18 13.06 21.65 0.28 -53.90 16 19 Si 0.94 46.20 29.55 68.60 2.03 48.23 16 20 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 21 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 22 H -0.30 -15.00 7.11 99.48 0.71 -14.30 16 23 C -0.10 -3.34 5.19 -19.86 -0.10 -3.44 16 24 C -0.10 -3.62 9.03 22.27 0.20 -3.42 16 25 C -0.14 -4.20 10.05 22.27 0.22 -3.98 16 26 C -0.13 -3.47 10.05 22.27 0.22 -3.25 16 27 C -0.13 -3.43 10.05 22.27 0.22 -3.21 16 28 C -0.13 -4.02 9.14 22.27 0.20 -3.82 16 29 C -0.03 -0.76 9.39 22.73 0.21 -0.55 16 30 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.10 0.87 8.09 -2.38 -0.02 0.86 16 34 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 35 H 0.19 2.67 8.06 -2.91 -0.02 2.64 16 36 H 0.16 4.71 6.42 -2.91 -0.02 4.70 16 37 H 0.41 13.64 6.21 -92.71 -0.58 13.06 16 38 H 0.04 1.69 7.30 -2.39 -0.02 1.68 16 39 H 0.08 2.45 6.85 -2.39 -0.02 2.43 16 40 H 0.38 17.56 8.04 -92.71 -0.75 16.81 16 41 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 42 H 0.11 4.26 7.51 -2.91 -0.02 4.24 16 43 H 0.13 3.42 8.06 -2.91 -0.02 3.40 16 44 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 45 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 46 H 0.13 3.53 6.22 -2.91 -0.02 3.51 16 47 H 0.15 3.77 7.74 -2.91 -0.02 3.75 16 Total: -1.00 -66.71 393.04 2.21 -64.51 By element: Atomic # 1 Polarization: 44.53 SS G_CDS: -0.32 Total: 44.22 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: 6.03 Total: -3.89 kcal Atomic # 7 Polarization: -123.40 SS G_CDS: -5.47 Total: -128.87 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.06 Total: -24.19 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -66.71 2.21 -64.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481367788.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.407 kcal (2) G-P(sol) polarization free energy of solvation -66.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds